BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00035334
         (462 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAS79687.1| RNA polymerase II large subunit [Ginkgo biloba]        292   2e-77
emb|CBI18915.3| unnamed protein product [Vitis vinifera]              292   2e-77
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su...   292   2e-77
gb|ACD63086.1| RNA polymerase II largest subunit [Liriodendron t...   292   2e-77
gb|ACD63084.1| RNA polymerase II largest subunit [Drimys winteri]     292   2e-77

>gb|AAS79687.1| RNA polymerase II large subunit [Ginkgo biloba]
          Length = 1013

 Score =  292 bits (747), Expect = 2e-77
 Identities = 143/154 (92%), Positives = 146/154 (94%)
 Frame = -1

Query: 462 TVTPYNIEWLKELVENGPHPPHGKTGAKYIIREDGKRLDLRYLKKDSDRHLELGYKVERH 283
           TVTPYNIE LKELVE GPHPP GKTGAKYIIREDG+RLDLRYLKK SD HLELGYKVERH
Sbjct: 311 TVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKVERH 370

Query: 282 LQDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSV 103
           L DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS 
Sbjct: 371 LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 430

Query: 102 ETKAEVLELMMVPKCIVSPQSNRPVIAIVQDTLL 1
           ET+AEVLELMMVPKCIVSPQSNRPV+ IVQDTLL
Sbjct: 431 ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLL 464


>emb|CBI18915.3| unnamed protein product [Vitis vinifera]
          Length = 1565

 Score =  292 bits (747), Expect = 2e-77
 Identities = 143/154 (92%), Positives = 146/154 (94%)
 Frame = -1

Query: 462 TVTPYNIEWLKELVENGPHPPHGKTGAKYIIREDGKRLDLRYLKKDSDRHLELGYKVERH 283
           TVTPYNIE LKELVE GPHPP GKTGAKYIIREDG+RLDLRYLKK SD HLELGYKVERH
Sbjct: 437 TVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKVERH 496

Query: 282 LQDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSV 103
           L DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS 
Sbjct: 497 LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 556

Query: 102 ETKAEVLELMMVPKCIVSPQSNRPVIAIVQDTLL 1
           ET+AEVLELMMVPKCIVSPQSNRPV+ IVQDTLL
Sbjct: 557 ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLL 590


>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
           vinifera]
          Length = 1848

 Score =  292 bits (747), Expect = 2e-77
 Identities = 143/154 (92%), Positives = 146/154 (94%)
 Frame = -1

Query: 462 TVTPYNIEWLKELVENGPHPPHGKTGAKYIIREDGKRLDLRYLKKDSDRHLELGYKVERH 283
           TVTPYNIE LKELVE GPHPP GKTGAKYIIREDG+RLDLRYLKK SD HLELGYKVERH
Sbjct: 389 TVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKVERH 448

Query: 282 LQDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSV 103
           L DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS 
Sbjct: 449 LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 508

Query: 102 ETKAEVLELMMVPKCIVSPQSNRPVIAIVQDTLL 1
           ET+AEVLELMMVPKCIVSPQSNRPV+ IVQDTLL
Sbjct: 509 ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLL 542


>gb|ACD63086.1| RNA polymerase II largest subunit [Liriodendron tulipifera]
          Length = 1010

 Score =  292 bits (747), Expect = 2e-77
 Identities = 143/154 (92%), Positives = 146/154 (94%)
 Frame = -1

Query: 462 TVTPYNIEWLKELVENGPHPPHGKTGAKYIIREDGKRLDLRYLKKDSDRHLELGYKVERH 283
           TVTPYNIE LKELVE GPHPP GKTGAKYIIREDG+RLDLRYLKK SD HLELGYKVERH
Sbjct: 308 TVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKVERH 367

Query: 282 LQDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSV 103
           L DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS 
Sbjct: 368 LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 427

Query: 102 ETKAEVLELMMVPKCIVSPQSNRPVIAIVQDTLL 1
           ET+AEVLELMMVPKCIVSPQSNRPV+ IVQDTLL
Sbjct: 428 ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLL 461


>gb|ACD63084.1| RNA polymerase II largest subunit [Drimys winteri]
          Length = 1010

 Score =  292 bits (747), Expect = 2e-77
 Identities = 143/154 (92%), Positives = 146/154 (94%)
 Frame = -1

Query: 462 TVTPYNIEWLKELVENGPHPPHGKTGAKYIIREDGKRLDLRYLKKDSDRHLELGYKVERH 283
           TVTPYNIE LKELVE GPHPP GKTGAKYIIREDG+RLDLRYLKK SD HLELGYKVERH
Sbjct: 308 TVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKVERH 367

Query: 282 LQDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSV 103
           L DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS 
Sbjct: 368 LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 427

Query: 102 ETKAEVLELMMVPKCIVSPQSNRPVIAIVQDTLL 1
           ET+AEVLELMMVPKCIVSPQSNRPV+ IVQDTLL
Sbjct: 428 ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLL 461