BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00035328
         (423 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCH50966.1| T4.5 [Malus x robusta]                                171   6e-41
ref|NP_001174286.1| Os05g0235100 [Oryza sativa Japonica Group] g...   163   1e-38
gb|AAT93988.1| putative polyprotein [Oryza sativa Japonica Group]     163   1e-38
gb|ABA91195.1| retrotransposon protein, putative, Ty1-copia subc...   162   2e-38
gb|ABB47203.2| retrotransposon protein, putative, unclassified [...   162   3e-38

>emb|CCH50966.1| T4.5 [Malus x robusta]
          Length = 1670

 Score =  171 bits (433), Expect = 6e-41
 Identities = 85/139 (61%), Positives = 107/139 (76%)
 Frame = +1

Query: 4    TASSTSYCSHLISQLSERFAMKDFGNLHYFLGIEVKRNSNGMFLSQTKYALDVLKRAKMD 183
            T SS + C  +ISQL   F +KD G+++YFLGIEV ++  G+ L Q KYALD+LK+  M 
Sbjct: 1348 TGSSVTECQSIISQLQTMFPVKDLGDINYFLGIEVHKSDQGLLLHQAKYALDLLKKTDML 1407

Query: 184  GVKPCSTPYCTTSKLDTTSGEPLTDPTEYRSLVGALQYLLWTRPDLSYSVNQVCQFMHSL 363
            G KPC+TP  +TSKLD  SG  L+DPT YRS VGALQYL WTRPDL+++VNQVCQ+MHS 
Sbjct: 1408 GAKPCATPV-STSKLDH-SGTLLSDPTSYRSTVGALQYLTWTRPDLAFAVNQVCQYMHSP 1465

Query: 364  RTSHMVAVKRILRYIKGTL 420
            +T H+ AVKRILRY+KGT+
Sbjct: 1466 QTIHLQAVKRILRYLKGTV 1484


>ref|NP_001174286.1| Os05g0235100 [Oryza sativa Japonica Group]
           gi|255676152|dbj|BAH93014.1| Os05g0235100, partial
           [Oryza sativa Japonica Group]
          Length = 841

 Score =  163 bits (413), Expect = 1e-38
 Identities = 80/139 (57%), Positives = 100/139 (71%)
 Frame = +1

Query: 4   TASSTSYCSHLISQLSERFAMKDFGNLHYFLGIEVKRNSNGMFLSQTKYALDVLKRAKMD 183
           TASS +   H+ ++L   FAM D G+LH+FLGI V R+S+G+FLSQ +Y +D+LKRA M 
Sbjct: 527 TASSATLLHHITARLHSEFAMTDLGDLHFFLGISVTRSSDGLFLSQRQYVVDLLKRAGMS 586

Query: 184 GVKPCSTPYCTTSKLDTTSGEPLTDPTEYRSLVGALQYLLWTRPDLSYSVNQVCQFMHSL 363
                +TP    SKL  T G P++DPTEYRSLVGALQYL  TRP+L+Y+V QVC FMH  
Sbjct: 587 ECHSTATPVDARSKLSATDGAPVSDPTEYRSLVGALQYLTLTRPELAYAVQQVCLFMHDP 646

Query: 364 RTSHMVAVKRILRYIKGTL 420
           R  H+  +KRILRYIKGTL
Sbjct: 647 REPHLALIKRILRYIKGTL 665


>gb|AAT93988.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1480

 Score =  163 bits (413), Expect = 1e-38
 Identities = 80/139 (57%), Positives = 100/139 (71%)
 Frame = +1

Query: 4    TASSTSYCSHLISQLSERFAMKDFGNLHYFLGIEVKRNSNGMFLSQTKYALDVLKRAKMD 183
            TASS +   H+ ++L   FAM D G+LH+FLGI V R+S+G+FLSQ +Y +D+LKRA M 
Sbjct: 1166 TASSATLLHHITARLHSEFAMTDLGDLHFFLGISVTRSSDGLFLSQRQYVVDLLKRAGMS 1225

Query: 184  GVKPCSTPYCTTSKLDTTSGEPLTDPTEYRSLVGALQYLLWTRPDLSYSVNQVCQFMHSL 363
                 +TP    SKL  T G P++DPTEYRSLVGALQYL  TRP+L+Y+V QVC FMH  
Sbjct: 1226 ECHSTATPVDARSKLSATDGAPVSDPTEYRSLVGALQYLTLTRPELAYAVQQVCLFMHDP 1285

Query: 364  RTSHMVAVKRILRYIKGTL 420
            R  H+  +KRILRYIKGTL
Sbjct: 1286 REPHLALIKRILRYIKGTL 1304


>gb|ABA91195.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 978

 Score =  162 bits (411), Expect = 2e-38
 Identities = 80/139 (57%), Positives = 99/139 (71%)
 Frame = +1

Query: 4    TASSTSYCSHLISQLSERFAMKDFGNLHYFLGIEVKRNSNGMFLSQTKYALDVLKRAKMD 183
            TASS +   H+ ++L   FAM D G+LH+FLGI V R+S+G+FLSQ +YA+D+LKRA M 
Sbjct: 710  TASSATLLQHITARLHSEFAMTDLGDLHFFLGISVTRSSDGLFLSQRQYAVDLLKRAGMS 769

Query: 184  GVKPCSTPYCTTSKLDTTSGEPLTDPTEYRSLVGALQYLLWTRPDLSYSVNQVCQFMHSL 363
                 +TP    SKL  T G P++DPTEYRSL GALQYL  TRP+L+Y V QVC FMH  
Sbjct: 770  ECHSTATPIDALSKLSATDGAPVSDPTEYRSLAGALQYLTLTRPELAYVVQQVCLFMHDP 829

Query: 364  RTSHMVAVKRILRYIKGTL 420
            R  H+  +KRILRYIKGTL
Sbjct: 830  REPHLALIKRILRYIKGTL 848


>gb|ABB47203.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1050

 Score =  162 bits (410), Expect = 3e-38
 Identities = 78/139 (56%), Positives = 100/139 (71%)
 Frame = +1

Query: 4    TASSTSYCSHLISQLSERFAMKDFGNLHYFLGIEVKRNSNGMFLSQTKYALDVLKRAKMD 183
            TASSTS   H+ ++L   FAM D G+LH+FLGI V R+++G+FLSQ +YA+D+L+RA M 
Sbjct: 836  TASSTSLLQHITARLHSEFAMTDLGDLHFFLGISVTRSADGLFLSQWQYAVDLLRRAGMS 895

Query: 184  GVKPCSTPYCTTSKLDTTSGEPLTDPTEYRSLVGALQYLLWTRPDLSYSVNQVCQFMHSL 363
               P +TP     KL  T G P++DP EYRSL GALQYL  TRP+++Y++ QVC FMH  
Sbjct: 896  ECHPTATPVDARCKLSATDGAPVSDPMEYRSLAGALQYLTLTRPEIAYAIQQVCLFMHDP 955

Query: 364  RTSHMVAVKRILRYIKGTL 420
            R  H+  VKRILRYIKGTL
Sbjct: 956  REPHLALVKRILRYIKGTL 974