BLASTX nr result
ID: Coptis25_contig00035302
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00035302 (818 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002278909.1| PREDICTED: pentatricopeptide repeat-containi... 241 1e-61 ref|XP_003540386.1| PREDICTED: pentatricopeptide repeat-containi... 237 2e-60 ref|XP_002330712.1| predicted protein [Populus trichocarpa] gi|2... 231 2e-58 ref|XP_002892331.1| pentatricopeptide repeat-containing protein ... 218 1e-54 ref|NP_563765.1| pentatricopeptide repeat-containing protein [Ar... 217 3e-54 >ref|XP_002278909.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06270 [Vitis vinifera] gi|302143379|emb|CBI21940.3| unnamed protein product [Vitis vinifera] Length = 343 Score = 241 bits (616), Expect = 1e-61 Identities = 127/251 (50%), Positives = 173/251 (68%), Gaps = 3/251 (1%) Frame = -2 Query: 745 QTIQESLQSAIQSKSYTQIPNILTXXXXXXXXXXXXXXS--YTQPLKTQIIDQILQSLIP 572 QT++ES+++A++SK+Y +IP++L ++Q L+TQ++D+ILQS IP Sbjct: 32 QTLEESIKAAVESKTYQKIPDLLISLEETCLNPNPFSFLSTFSQNLRTQVVDEILQSFIP 91 Query: 571 IRPRSLPHLTYSYLLSHTLENPDPFPLTFAILQRTLRSGGTPVKQTHLSLSSTWITYRKH 392 +RPRS P + Y+ LLS TL++ +P PL AILQRTLRSG PV QTHL LSS W++ R+ Sbjct: 92 LRPRSRPQIAYACLLSFTLQSANPLPLALAILQRTLRSGCIPVPQTHLLLSSAWLSRRRQ 151 Query: 391 D-SVPGILSAMRAIGYKPDLNTCNYLVQSLCAVDQFDESVRVLKCMGQVGCEPNSESYGL 215 SV ILS M++IGY PD TCNYL+ SLCA+DQ E+V VLK MGQVGC P+ E YG Sbjct: 152 SHSVSNILSEMQSIGYYPDCGTCNYLILSLCAIDQLVEAVIVLKSMGQVGCIPDLEGYGS 211 Query: 214 VIGSLCGAKKTNDAVELVKEMVRVENRVVLRQGTVVKLMAAMKANGEIKKAVEMVDLVGN 35 VIG++C ++T DA EL+KEMV + + RQGTV+ L+AA++A EI KAVEM++ + Sbjct: 212 VIGAMCAMRRTTDATELMKEMV-AKIGLTPRQGTVLNLVAALRAKKEIWKAVEMIEFLEG 270 Query: 34 VGVRVGFEGYE 2 GF YE Sbjct: 271 EDFNAGFASYE 281 >ref|XP_003540386.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06270-like [Glycine max] Length = 342 Score = 237 bits (605), Expect = 2e-60 Identities = 125/250 (50%), Positives = 176/250 (70%), Gaps = 2/250 (0%) Frame = -2 Query: 745 QTIQESLQSAIQSKSYTQIPNIL-TXXXXXXXXXXXXXXSYTQPLKTQIIDQILQSLIPI 569 Q +++++++ +++K+Y +IP +L + S+ Q ++ QI+D++LQSLIPI Sbjct: 32 QNLEQAVRAEVEAKNYIKIPELLISSDACQISNPFSFFSSFPQNIRVQIVDEMLQSLIPI 91 Query: 568 RPRSLPHLTYSYLLSHTLENPDPFPLTFAILQRTLRSGGTPVKQTHLSLSSTWI-TYRKH 392 RPRS LTYSYLLS+TL++ PFPL A+LQRTLRSG PV QTH+ LSS W+ + Sbjct: 92 RPRSKAQLTYSYLLSYTLQSSHPFPLALAVLQRTLRSGCVPVPQTHVLLSSAWLDQHCLS 151 Query: 391 DSVPGILSAMRAIGYKPDLNTCNYLVQSLCAVDQFDESVRVLKCMGQVGCEPNSESYGLV 212 SV IL M++IGY PD TCNYL+ SLCAVDQ +E+V+VL+ MG GC P+S SYG V Sbjct: 152 HSVANILLQMQSIGYHPDCGTCNYLLSSLCAVDQLEEAVKVLRGMGGAGCIPDSSSYGAV 211 Query: 211 IGSLCGAKKTNDAVELVKEMVRVENRVVLRQGTVVKLMAAMKANGEIKKAVEMVDLVGNV 32 IG++C +KT A++L+K+MV V+ + QGT+VKL+AA++AN EI KAVEM++ + Sbjct: 212 IGAMCRVRKTAKALDLMKQMV-VQYGLTPGQGTLVKLLAALRANREIWKAVEMIEFLEKE 270 Query: 31 GVRVGFEGYE 2 G VGFE YE Sbjct: 271 GNSVGFESYE 280 >ref|XP_002330712.1| predicted protein [Populus trichocarpa] gi|222872316|gb|EEF09447.1| predicted protein [Populus trichocarpa] Length = 341 Score = 231 bits (588), Expect = 2e-58 Identities = 124/249 (49%), Positives = 172/249 (69%), Gaps = 3/249 (1%) Frame = -2 Query: 739 IQESLQSAIQSKSYTQIPNILTXXXXXXXXXXXXXXSYTQP--LKTQIIDQILQSLIPIR 566 ++E+L++A++ KSY++ P++ T P L+TQ+ID+I+QSLIPIR Sbjct: 32 LEETLKAAVECKSYSKFPDLFDSFKQSNNNPSPFSFLSTFPFNLRTQVIDEIIQSLIPIR 91 Query: 565 PRSLPHLTYSYLLSHTLENPDPFPLTFAILQRTLRSGGTPVKQTHLSLSSTWITYRKH-D 389 PR + YS LLS+TL+N + F L+ AI+Q TLRSG PV QTH+SLSS W+ R+ Sbjct: 92 PRFRNFIVYSSLLSYTLQNSNLFSLSLAIIQCTLRSGCLPVPQTHVSLSSAWLDRRREGQ 151 Query: 388 SVPGILSAMRAIGYKPDLNTCNYLVQSLCAVDQFDESVRVLKCMGQVGCEPNSESYGLVI 209 SV IL M++IGY PD CNY+V SLC VDQ E+V+VLK M QVGC P+ ESYG+VI Sbjct: 152 SVGDILMEMKSIGYNPDCGLCNYIVLSLCNVDQLIEAVKVLKGMKQVGCFPDWESYGIVI 211 Query: 208 GSLCGAKKTNDAVELVKEMVRVENRVVLRQGTVVKLMAAMKANGEIKKAVEMVDLVGNVG 29 G++C +K +DA+E++KEMV V R+ RQG VVK++AA++AN E++KA EM++ + G Sbjct: 212 GAMCRVRKCDDAIEMMKEMV-VRMRLCPRQGVVVKVLAALRANREMRKAGEMIEFLEKEG 270 Query: 28 VRVGFEGYE 2 VGFE YE Sbjct: 271 YGVGFESYE 279 >ref|XP_002892331.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297338173|gb|EFH68590.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 343 Score = 218 bits (556), Expect = 1e-54 Identities = 114/251 (45%), Positives = 166/251 (66%), Gaps = 3/251 (1%) Frame = -2 Query: 745 QTIQESLQSAIQSKSYTQIPNILTXXXXXXXXXXXXXXS--YTQPLKTQIIDQILQSLIP 572 + ++++++ A+++K Y +IP ++ + + ++ID+ILQS +P Sbjct: 32 EAVEKAIKCAVETKEYLRIPELVVSLKEPYQNSMLFSFLSAFQHQHRIRVIDEILQSFVP 91 Query: 571 IRPRSLPHLTYSYLLSHTLENPDPFPLTFAILQRTLRSGGTPVKQTHLSLSSTWITYRK- 395 +RPRSLP + YS LL++ L++ DP PL+FAILQRTLRSG P QT L LS W+ R+ Sbjct: 92 VRPRSLPKIVYSSLLTYCLQSSDPLPLSFAILQRTLRSGCLPNPQTQLLLSDAWLERRRG 151 Query: 394 HDSVPGILSAMRAIGYKPDLNTCNYLVQSLCAVDQFDESVRVLKCMGQVGCEPNSESYGL 215 SV I++ M+ IGY PD TCNYLV SLCAVD+ DE+++V++ MG GC P+ ESYG Sbjct: 152 SQSVADIINEMKLIGYSPDTGTCNYLVSSLCAVDKLDEAIKVVEEMGAAGCIPDVESYGA 211 Query: 214 VIGSLCGAKKTNDAVELVKEMVRVENRVVLRQGTVVKLMAAMKANGEIKKAVEMVDLVGN 35 VI SLC A+KTND V++VKEMV + + R+G + K+ AA++AN EI KA+EM++ V + Sbjct: 212 VINSLCLARKTNDVVKIVKEMVS-KAGISPRKGMLTKVAAALRANREIWKAIEMIEFVES 270 Query: 34 VGVRVGFEGYE 2 V FE YE Sbjct: 271 RDYPVEFESYE 281 >ref|NP_563765.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75264068|sp|Q9LNC0.1|PPR16_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g06270 gi|8844132|gb|AAF80224.1|AC025290_13 Contains similarity to an unknown protein F23N19.4 gi|6630464 from Arabidopsis thaliana gb|AC007190 and contains multiple PPR PF|01535 repeats. EST gb|T44174 comes from this gene [Arabidopsis thaliana] gi|17529194|gb|AAL38823.1| unknown protein [Arabidopsis thaliana] gi|20465473|gb|AAM20196.1| unknown protein [Arabidopsis thaliana] gi|21536601|gb|AAM60933.1| unknown [Arabidopsis thaliana] gi|332189849|gb|AEE27970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 343 Score = 217 bits (552), Expect = 3e-54 Identities = 113/251 (45%), Positives = 166/251 (66%), Gaps = 3/251 (1%) Frame = -2 Query: 745 QTIQESLQSAIQSKSYTQIPNILTXXXXXXXXXXXXXXS--YTQPLKTQIIDQILQSLIP 572 + ++++++ A+++K Y +IP ++ + + + ++ID+ILQS +P Sbjct: 32 EAVEKAIKCAVETKEYLRIPELVVSLKEPYQNSTLFSFLSAFQRHHRIRVIDEILQSFVP 91 Query: 571 IRPRSLPHLTYSYLLSHTLENPDPFPLTFAILQRTLRSGGTPVKQTHLSLSSTWITYRK- 395 +RPRSLP + YS LL++ L++ DP PL+FAILQRTLRSG P QTHL LS W+ R+ Sbjct: 92 VRPRSLPKIVYSSLLTYCLQSSDPLPLSFAILQRTLRSGCLPNPQTHLLLSDAWLERRRG 151 Query: 394 HDSVPGILSAMRAIGYKPDLNTCNYLVQSLCAVDQFDESVRVLKCMGQVGCEPNSESYGL 215 SV I++ M+ IGY PD TCNYLV SLCAVD+ DE+++V++ M GC P+ ESYG Sbjct: 152 SQSVADIINEMKLIGYSPDTGTCNYLVSSLCAVDKLDEAIKVVEEMSAAGCIPDVESYGA 211 Query: 214 VIGSLCGAKKTNDAVELVKEMVRVENRVVLRQGTVVKLMAAMKANGEIKKAVEMVDLVGN 35 VI SLC A+KT D V++VKEMV + + R+G + K+ AA++AN EI KA+EM++ V + Sbjct: 212 VINSLCLARKTTDVVKIVKEMVS-KAGISPRKGMLTKVAAALRANREIWKAIEMIEFVES 270 Query: 34 VGVRVGFEGYE 2 V FE YE Sbjct: 271 RDYPVEFESYE 281