BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00035302
         (818 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278909.1| PREDICTED: pentatricopeptide repeat-containi...   241   1e-61
ref|XP_003540386.1| PREDICTED: pentatricopeptide repeat-containi...   237   2e-60
ref|XP_002330712.1| predicted protein [Populus trichocarpa] gi|2...   231   2e-58
ref|XP_002892331.1| pentatricopeptide repeat-containing protein ...   218   1e-54
ref|NP_563765.1| pentatricopeptide repeat-containing protein [Ar...   217   3e-54

>ref|XP_002278909.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06270
           [Vitis vinifera] gi|302143379|emb|CBI21940.3| unnamed
           protein product [Vitis vinifera]
          Length = 343

 Score =  241 bits (616), Expect = 1e-61
 Identities = 127/251 (50%), Positives = 173/251 (68%), Gaps = 3/251 (1%)
 Frame = -2

Query: 745 QTIQESLQSAIQSKSYTQIPNILTXXXXXXXXXXXXXXS--YTQPLKTQIIDQILQSLIP 572
           QT++ES+++A++SK+Y +IP++L                  ++Q L+TQ++D+ILQS IP
Sbjct: 32  QTLEESIKAAVESKTYQKIPDLLISLEETCLNPNPFSFLSTFSQNLRTQVVDEILQSFIP 91

Query: 571 IRPRSLPHLTYSYLLSHTLENPDPFPLTFAILQRTLRSGGTPVKQTHLSLSSTWITYRKH 392
           +RPRS P + Y+ LLS TL++ +P PL  AILQRTLRSG  PV QTHL LSS W++ R+ 
Sbjct: 92  LRPRSRPQIAYACLLSFTLQSANPLPLALAILQRTLRSGCIPVPQTHLLLSSAWLSRRRQ 151

Query: 391 D-SVPGILSAMRAIGYKPDLNTCNYLVQSLCAVDQFDESVRVLKCMGQVGCEPNSESYGL 215
             SV  ILS M++IGY PD  TCNYL+ SLCA+DQ  E+V VLK MGQVGC P+ E YG 
Sbjct: 152 SHSVSNILSEMQSIGYYPDCGTCNYLILSLCAIDQLVEAVIVLKSMGQVGCIPDLEGYGS 211

Query: 214 VIGSLCGAKKTNDAVELVKEMVRVENRVVLRQGTVVKLMAAMKANGEIKKAVEMVDLVGN 35
           VIG++C  ++T DA EL+KEMV  +  +  RQGTV+ L+AA++A  EI KAVEM++ +  
Sbjct: 212 VIGAMCAMRRTTDATELMKEMV-AKIGLTPRQGTVLNLVAALRAKKEIWKAVEMIEFLEG 270

Query: 34  VGVRVGFEGYE 2
                GF  YE
Sbjct: 271 EDFNAGFASYE 281


>ref|XP_003540386.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06270-like [Glycine max]
          Length = 342

 Score =  237 bits (605), Expect = 2e-60
 Identities = 125/250 (50%), Positives = 176/250 (70%), Gaps = 2/250 (0%)
 Frame = -2

Query: 745 QTIQESLQSAIQSKSYTQIPNIL-TXXXXXXXXXXXXXXSYTQPLKTQIIDQILQSLIPI 569
           Q +++++++ +++K+Y +IP +L +              S+ Q ++ QI+D++LQSLIPI
Sbjct: 32  QNLEQAVRAEVEAKNYIKIPELLISSDACQISNPFSFFSSFPQNIRVQIVDEMLQSLIPI 91

Query: 568 RPRSLPHLTYSYLLSHTLENPDPFPLTFAILQRTLRSGGTPVKQTHLSLSSTWI-TYRKH 392
           RPRS   LTYSYLLS+TL++  PFPL  A+LQRTLRSG  PV QTH+ LSS W+  +   
Sbjct: 92  RPRSKAQLTYSYLLSYTLQSSHPFPLALAVLQRTLRSGCVPVPQTHVLLSSAWLDQHCLS 151

Query: 391 DSVPGILSAMRAIGYKPDLNTCNYLVQSLCAVDQFDESVRVLKCMGQVGCEPNSESYGLV 212
            SV  IL  M++IGY PD  TCNYL+ SLCAVDQ +E+V+VL+ MG  GC P+S SYG V
Sbjct: 152 HSVANILLQMQSIGYHPDCGTCNYLLSSLCAVDQLEEAVKVLRGMGGAGCIPDSSSYGAV 211

Query: 211 IGSLCGAKKTNDAVELVKEMVRVENRVVLRQGTVVKLMAAMKANGEIKKAVEMVDLVGNV 32
           IG++C  +KT  A++L+K+MV V+  +   QGT+VKL+AA++AN EI KAVEM++ +   
Sbjct: 212 IGAMCRVRKTAKALDLMKQMV-VQYGLTPGQGTLVKLLAALRANREIWKAVEMIEFLEKE 270

Query: 31  GVRVGFEGYE 2
           G  VGFE YE
Sbjct: 271 GNSVGFESYE 280


>ref|XP_002330712.1| predicted protein [Populus trichocarpa] gi|222872316|gb|EEF09447.1|
           predicted protein [Populus trichocarpa]
          Length = 341

 Score =  231 bits (588), Expect = 2e-58
 Identities = 124/249 (49%), Positives = 172/249 (69%), Gaps = 3/249 (1%)
 Frame = -2

Query: 739 IQESLQSAIQSKSYTQIPNILTXXXXXXXXXXXXXXSYTQP--LKTQIIDQILQSLIPIR 566
           ++E+L++A++ KSY++ P++                  T P  L+TQ+ID+I+QSLIPIR
Sbjct: 32  LEETLKAAVECKSYSKFPDLFDSFKQSNNNPSPFSFLSTFPFNLRTQVIDEIIQSLIPIR 91

Query: 565 PRSLPHLTYSYLLSHTLENPDPFPLTFAILQRTLRSGGTPVKQTHLSLSSTWITYRKH-D 389
           PR    + YS LLS+TL+N + F L+ AI+Q TLRSG  PV QTH+SLSS W+  R+   
Sbjct: 92  PRFRNFIVYSSLLSYTLQNSNLFSLSLAIIQCTLRSGCLPVPQTHVSLSSAWLDRRREGQ 151

Query: 388 SVPGILSAMRAIGYKPDLNTCNYLVQSLCAVDQFDESVRVLKCMGQVGCEPNSESYGLVI 209
           SV  IL  M++IGY PD   CNY+V SLC VDQ  E+V+VLK M QVGC P+ ESYG+VI
Sbjct: 152 SVGDILMEMKSIGYNPDCGLCNYIVLSLCNVDQLIEAVKVLKGMKQVGCFPDWESYGIVI 211

Query: 208 GSLCGAKKTNDAVELVKEMVRVENRVVLRQGTVVKLMAAMKANGEIKKAVEMVDLVGNVG 29
           G++C  +K +DA+E++KEMV V  R+  RQG VVK++AA++AN E++KA EM++ +   G
Sbjct: 212 GAMCRVRKCDDAIEMMKEMV-VRMRLCPRQGVVVKVLAALRANREMRKAGEMIEFLEKEG 270

Query: 28  VRVGFEGYE 2
             VGFE YE
Sbjct: 271 YGVGFESYE 279


>ref|XP_002892331.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297338173|gb|EFH68590.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 343

 Score =  218 bits (556), Expect = 1e-54
 Identities = 114/251 (45%), Positives = 166/251 (66%), Gaps = 3/251 (1%)
 Frame = -2

Query: 745 QTIQESLQSAIQSKSYTQIPNILTXXXXXXXXXXXXXXS--YTQPLKTQIIDQILQSLIP 572
           + ++++++ A+++K Y +IP ++                  +    + ++ID+ILQS +P
Sbjct: 32  EAVEKAIKCAVETKEYLRIPELVVSLKEPYQNSMLFSFLSAFQHQHRIRVIDEILQSFVP 91

Query: 571 IRPRSLPHLTYSYLLSHTLENPDPFPLTFAILQRTLRSGGTPVKQTHLSLSSTWITYRK- 395
           +RPRSLP + YS LL++ L++ DP PL+FAILQRTLRSG  P  QT L LS  W+  R+ 
Sbjct: 92  VRPRSLPKIVYSSLLTYCLQSSDPLPLSFAILQRTLRSGCLPNPQTQLLLSDAWLERRRG 151

Query: 394 HDSVPGILSAMRAIGYKPDLNTCNYLVQSLCAVDQFDESVRVLKCMGQVGCEPNSESYGL 215
             SV  I++ M+ IGY PD  TCNYLV SLCAVD+ DE+++V++ MG  GC P+ ESYG 
Sbjct: 152 SQSVADIINEMKLIGYSPDTGTCNYLVSSLCAVDKLDEAIKVVEEMGAAGCIPDVESYGA 211

Query: 214 VIGSLCGAKKTNDAVELVKEMVRVENRVVLRQGTVVKLMAAMKANGEIKKAVEMVDLVGN 35
           VI SLC A+KTND V++VKEMV  +  +  R+G + K+ AA++AN EI KA+EM++ V +
Sbjct: 212 VINSLCLARKTNDVVKIVKEMVS-KAGISPRKGMLTKVAAALRANREIWKAIEMIEFVES 270

Query: 34  VGVRVGFEGYE 2
               V FE YE
Sbjct: 271 RDYPVEFESYE 281


>ref|NP_563765.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75264068|sp|Q9LNC0.1|PPR16_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g06270 gi|8844132|gb|AAF80224.1|AC025290_13 Contains
           similarity to an unknown protein F23N19.4 gi|6630464
           from Arabidopsis thaliana gb|AC007190 and contains
           multiple PPR PF|01535 repeats. EST gb|T44174 comes from
           this gene [Arabidopsis thaliana]
           gi|17529194|gb|AAL38823.1| unknown protein [Arabidopsis
           thaliana] gi|20465473|gb|AAM20196.1| unknown protein
           [Arabidopsis thaliana] gi|21536601|gb|AAM60933.1|
           unknown [Arabidopsis thaliana]
           gi|332189849|gb|AEE27970.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 343

 Score =  217 bits (552), Expect = 3e-54
 Identities = 113/251 (45%), Positives = 166/251 (66%), Gaps = 3/251 (1%)
 Frame = -2

Query: 745 QTIQESLQSAIQSKSYTQIPNILTXXXXXXXXXXXXXXS--YTQPLKTQIIDQILQSLIP 572
           + ++++++ A+++K Y +IP ++                  + +  + ++ID+ILQS +P
Sbjct: 32  EAVEKAIKCAVETKEYLRIPELVVSLKEPYQNSTLFSFLSAFQRHHRIRVIDEILQSFVP 91

Query: 571 IRPRSLPHLTYSYLLSHTLENPDPFPLTFAILQRTLRSGGTPVKQTHLSLSSTWITYRK- 395
           +RPRSLP + YS LL++ L++ DP PL+FAILQRTLRSG  P  QTHL LS  W+  R+ 
Sbjct: 92  VRPRSLPKIVYSSLLTYCLQSSDPLPLSFAILQRTLRSGCLPNPQTHLLLSDAWLERRRG 151

Query: 394 HDSVPGILSAMRAIGYKPDLNTCNYLVQSLCAVDQFDESVRVLKCMGQVGCEPNSESYGL 215
             SV  I++ M+ IGY PD  TCNYLV SLCAVD+ DE+++V++ M   GC P+ ESYG 
Sbjct: 152 SQSVADIINEMKLIGYSPDTGTCNYLVSSLCAVDKLDEAIKVVEEMSAAGCIPDVESYGA 211

Query: 214 VIGSLCGAKKTNDAVELVKEMVRVENRVVLRQGTVVKLMAAMKANGEIKKAVEMVDLVGN 35
           VI SLC A+KT D V++VKEMV  +  +  R+G + K+ AA++AN EI KA+EM++ V +
Sbjct: 212 VINSLCLARKTTDVVKIVKEMVS-KAGISPRKGMLTKVAAALRANREIWKAIEMIEFVES 270

Query: 34  VGVRVGFEGYE 2
               V FE YE
Sbjct: 271 RDYPVEFESYE 281