BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00035293
         (671 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [...   195   6e-48
ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   186   3e-45
ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   183   3e-44
ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   177   1e-42
ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thalian...   176   5e-42

>ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223542055|gb|EEF43599.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 536

 Score =  195 bits (496), Expect = 6e-48
 Identities = 108/210 (51%), Positives = 133/210 (63%), Gaps = 7/210 (3%)
 Frame = -3

Query: 609 YTTATSLTKKEAETQN-------KNNGKWFTLPPFTSTIDATSLAKQLXXXXXXXXXXXT 451
           Y T T++T+ ++ T++       KN GK+FTLPP+TSTI  ++L K L           T
Sbjct: 100 YFTTTTITQTKSSTKDQTSKNNTKNTGKFFTLPPYTSTISGSALGKALSATATAKASTET 159

Query: 450 NALKWVTRCCPQLPNSLVHKLFRLRQVRKECPSXXXXXXXXAPEQRLKRVAAKDELNVGD 271
            ALKWV RCCP+LP +LV KLFRLRQV++E  +          E + KRVAAKD +NVGD
Sbjct: 160 TALKWVLRCCPELPRNLVQKLFRLRQVKRELLNVGDGEM----EHKTKRVAAKDLMNVGD 215

Query: 270 RIFLPLSVXXXXXXXXXXXXXEFRCSVDEVNYMRSIILHKDPDIIVINKPRGMPVQGGIG 91
           RIFLP+SV                C   E N++R + L+KD  IIV+NKP GMPVQGGIG
Sbjct: 216 RIFLPISVQALPFEKQKC-----HCGEKEANFIRGLELYKDEAIIVVNKPPGMPVQGGIG 270

Query: 90  IKDSLDVLAATSLIYDYPEPPRLVHRLDRD 1
           IK S D LAA+ L YDY EPPRLVHRLDRD
Sbjct: 271 IKSSFDELAASCLSYDYSEPPRLVHRLDRD 300


>ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis
           vinifera] gi|296090438|emb|CBI40257.3| unnamed protein
           product [Vitis vinifera]
          Length = 476

 Score =  186 bits (473), Expect = 3e-45
 Identities = 104/199 (52%), Positives = 125/199 (62%), Gaps = 7/199 (3%)
 Frame = -3

Query: 576 AETQNKNNGKWFTLPPFTSTIDATSLAKQLXXXXXXXXXXXTNA------LKWVTRCCPQ 415
           +E      GKWFTLP FT  +DA+SL K L           T A      LKWV RCCPQ
Sbjct: 46  SEAHKSKKGKWFTLPAFTPVVDASSLGKVLSGHRTDLNTGNTTAGASTTALKWVVRCCPQ 105

Query: 414 LPNSLVHKLFRLRQVRKECPSXXXXXXXXA-PEQRLKRVAAKDELNVGDRIFLPLSVXXX 238
           LP SLV KLFRLRQVR+E  +           E RLKRVAAKD +N+GD+I LP++V   
Sbjct: 106 LPRSLVQKLFRLRQVRRESYNMITSDIGVQNQEHRLKRVAAKDLMNLGDQILLPITVEEF 165

Query: 237 XXXXXXXXXXEFRCSVDEVNYMRSIILHKDPDIIVINKPRGMPVQGGIGIKDSLDVLAAT 58
                      + C+ +E+N++ ++ L+KDP IIV+NKP G+PVQGGIGIK SLD LAAT
Sbjct: 166 PSEKHE-----YHCNDEEINFVHNLELYKDPAIIVVNKPPGLPVQGGIGIKRSLDELAAT 220

Query: 57  SLIYDYPEPPRLVHRLDRD 1
            L YD  EPPRLVHRLDRD
Sbjct: 221 YLRYDCSEPPRLVHRLDRD 239


>ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
           sativus]
          Length = 471

 Score =  183 bits (464), Expect = 3e-44
 Identities = 96/195 (49%), Positives = 122/195 (62%), Gaps = 4/195 (2%)
 Frame = -3

Query: 573 ETQNKNNGKWFTLPPFTSTIDATSLAKQLXXXXXXXXXXXTNA----LKWVTRCCPQLPN 406
           +   K + +WFTLPP+T+T++ + L  ++           + A    LKWV RCCP+LP 
Sbjct: 51  QKNEKGSNRWFTLPPYTATVNGSILGNRIMNGGGQAELGASTAAITALKWVIRCCPELPR 110

Query: 405 SLVHKLFRLRQVRKECPSXXXXXXXXAPEQRLKRVAAKDELNVGDRIFLPLSVXXXXXXX 226
           SLV KLFRLR+VR+                +LKRVAAKD LNVGD+IFLP+SV       
Sbjct: 111 SLVQKLFRLRKVRRGSSMIENSEYNLEARDQLKRVAAKDILNVGDQIFLPMSVQVFSTEK 170

Query: 225 XXXXXXEFRCSVDEVNYMRSIILHKDPDIIVINKPRGMPVQGGIGIKDSLDVLAATSLIY 46
                    C+ +E  +M S++LHKDP I+VINKP G+PVQGGIG+K SLD LAA+ L Y
Sbjct: 171 TRDY-----CNKEEETFMHSLVLHKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLSY 225

Query: 45  DYPEPPRLVHRLDRD 1
            Y EPPRLVHRLDRD
Sbjct: 226 GYSEPPRLVHRLDRD 240


>ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
           sativus]
          Length = 466

 Score =  177 bits (450), Expect = 1e-42
 Identities = 95/195 (48%), Positives = 122/195 (62%), Gaps = 4/195 (2%)
 Frame = -3

Query: 573 ETQNKNNGKWFTLPPFTSTIDATSLAKQLXXXXXXXXXXXTNA----LKWVTRCCPQLPN 406
           +   K + +WFTLPP+T+T++ + L  ++           + A    LKWV RCCP+LP 
Sbjct: 51  QKNEKGSNRWFTLPPYTATVNGSILGNRIMNGGGQAELGASTAAITALKWVIRCCPELPR 110

Query: 405 SLVHKLFRLRQVRKECPSXXXXXXXXAPEQRLKRVAAKDELNVGDRIFLPLSVXXXXXXX 226
           SLV KLFRLR+V ++               +LKRVAAKD LNVGD+IFLP+SV       
Sbjct: 111 SLVQKLFRLRKVPRQL-----NVGCGNSHHQLKRVAAKDILNVGDQIFLPMSVQVFSTEK 165

Query: 225 XXXXXXEFRCSVDEVNYMRSIILHKDPDIIVINKPRGMPVQGGIGIKDSLDVLAATSLIY 46
                    C+ +E  +M S++LHKDP I+VINKP G+PVQGGIG+K SLD LAA+ L Y
Sbjct: 166 TRDY-----CNKEEETFMHSLVLHKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLSY 220

Query: 45  DYPEPPRLVHRLDRD 1
            Y EPPRLVHRLDRD
Sbjct: 221 GYSEPPRLVHRLDRD 235


>ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thaliana]
           gi|75274073|sp|Q9LT72.1|PUS4_ARATH RecName: Full=RNA
           pseudourine synthase 4, mitochondrial; AltName: Full=RNA
           pseudouridylate synthase 4; AltName: Full=RNA-uridine
           isomerase 4; Flags: Precursor
           gi|11994467|dbj|BAB02469.1| unnamed protein product
           [Arabidopsis thaliana] gi|110737723|dbj|BAF00800.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|134031916|gb|ABO45695.1| At3g19440 [Arabidopsis
           thaliana] gi|332642719|gb|AEE76240.1| RNA pseudourine
           synthase 4 [Arabidopsis thaliana]
          Length = 477

 Score =  176 bits (445), Expect = 5e-42
 Identities = 98/201 (48%), Positives = 124/201 (61%), Gaps = 5/201 (2%)
 Frame = -3

Query: 588 TKKEAETQNKNN-GKWFTLPPFTSTIDATSLAKQLXXXXXXXXXXXTN----ALKWVTRC 424
           T+  + TQ  ++ GKW TLPPF+ TID T++ K L            N    AL+W+ RC
Sbjct: 40  TRSYSTTQTDDSRGKWLTLPPFSPTIDGTAVGKDLLSDGDSVKSSTDNSKTTALRWILRC 99

Query: 423 CPQLPNSLVHKLFRLRQVRKECPSXXXXXXXXAPEQRLKRVAAKDELNVGDRIFLPLSVX 244
            P LP +LV KLFRLRQVR+E               +LKRVAAK+ LNVGDRI+LPLSV 
Sbjct: 100 RPDLPRTLVQKLFRLRQVRREMSMSVDGDELQ--RSQLKRVAAKESLNVGDRIYLPLSVD 157

Query: 243 XXXXXXXXXXXXEFRCSVDEVNYMRSIILHKDPDIIVINKPRGMPVQGGIGIKDSLDVLA 64
                        F+CS +E  ++ S++L+KDP IIV+NKP G+ VQGG GIK S+D LA
Sbjct: 158 NDTPQTPPAKKESFQCSDEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGSGIKTSIDELA 217

Query: 63  ATSLIYDYPEPPRLVHRLDRD 1
           A+ L +D  E PRLVHRLDRD
Sbjct: 218 ASCLKFDKSESPRLVHRLDRD 238