BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00035277
         (407 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265789.1| PREDICTED: DNA polymerase alpha subunit B [V...   124   1e-26
ref|XP_001772028.1| predicted protein [Physcomitrella patens sub...    88   4e-25
gb|AFK40175.1| unknown [Medicago truncatula]                          108   5e-25
ref|XP_002438164.1| hypothetical protein SORBIDRAFT_10g009040 [S...   116   2e-24
ref|XP_003578733.1| PREDICTED: DNA polymerase alpha subunit B-li...   114   1e-23

>ref|XP_002265789.1| PREDICTED: DNA polymerase alpha subunit B [Vitis vinifera]
           gi|297738371|emb|CBI27572.3| unnamed protein product
           [Vitis vinifera]
          Length = 623

 Score =  124 bits (310), Expect = 1e-26
 Identities = 58/73 (79%), Positives = 67/73 (91%)
 Frame = +1

Query: 10  KLSLVITAGPFTTTDNLLFKPLVELLAYATRKQPQLLMLLGPFVDSEHPEIRKATIDRSF 189
           +LSL++ AGPFTTTDNLLF+PL ELLAYA RK PQLL+LLGPFVDSEHPEIRK T+DRSF
Sbjct: 357 ELSLMVAAGPFTTTDNLLFEPLTELLAYARRKMPQLLILLGPFVDSEHPEIRKGTVDRSF 416

Query: 190 DDIFHSDILRRVQ 228
           D+IFH +ILRR+Q
Sbjct: 417 DEIFHLEILRRLQ 429



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 35/63 (55%), Positives = 44/63 (69%)
 Frame = +3

Query: 216 KKGTKSYNFLDSRMEDVLHSFTLFFCLIQLQDYAKYMGSAARVVLVPSLRDAFHDFVFPQ 395
           +KGT     +D   +++ H       L +LQDY +YMGSAARV+LVPS+RDA HDFVFPQ
Sbjct: 408 RKGT-----VDRSFDEIFH----LEILRRLQDYVEYMGSAARVILVPSIRDANHDFVFPQ 458

Query: 396 PAF 404
           PAF
Sbjct: 459 PAF 461


>ref|XP_001772028.1| predicted protein [Physcomitrella patens subsp. patens]
           gi|162676629|gb|EDQ63109.1| predicted protein
           [Physcomitrella patens subsp. patens]
          Length = 635

 Score = 87.8 bits (216), Expect(2) = 4e-25
 Identities = 39/70 (55%), Positives = 53/70 (75%)
 Frame = +1

Query: 19  LVITAGPFTTTDNLLFKPLVELLAYATRKQPQLLMLLGPFVDSEHPEIRKATIDRSFDDI 198
           +V  AGPFTT DNL ++PLVEL AYA + +P LL+L+GPFVDSEHP+I++ T+ + F  I
Sbjct: 357 IVAAAGPFTTNDNLAYEPLVELFAYAKKVRPNLLILMGPFVDSEHPQIKQGTVGKLFSHI 416

Query: 199 FHSDILRRVQ 228
           F  +I  RV+
Sbjct: 417 FQEEIRMRVE 426



 Score = 52.0 bits (123), Expect(2) = 4e-25
 Identities = 21/37 (56%), Positives = 28/37 (75%)
 Frame = +3

Query: 297 IQLQDYAKYMGSAARVVLVPSLRDAFHDFVFPQPAFD 407
           ++++DY + MG   R+VLVPS RDA HD +FPQP FD
Sbjct: 423 MRVEDYCEEMGDGCRIVLVPSHRDAHHDLIFPQPPFD 459


>gb|AFK40175.1| unknown [Medicago truncatula]
          Length = 447

 Score =  108 bits (270), Expect(2) = 5e-25
 Identities = 50/76 (65%), Positives = 62/76 (81%)
 Frame = +1

Query: 7   KKLSLVITAGPFTTTDNLLFKPLVELLAYATRKQPQLLMLLGPFVDSEHPEIRKATIDRS 186
           ++LS++I AGPFTTTDNL F+PLVELLAYA R+ PQLL+LLGPF+DSEHP+I+K T+DR 
Sbjct: 353 RELSMIIAAGPFTTTDNLFFEPLVELLAYAKRRPPQLLVLLGPFIDSEHPDIKKGTVDRD 412

Query: 187 FDDIFHSDILRRVQSL 234
           FD+IF    L  V  L
Sbjct: 413 FDEIFRFGSLEEVGRL 428



 Score = 30.8 bits (68), Expect(2) = 5e-25
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 296 DPVTRLCQIYGFCCSSGSCTIFTRC 370
           + V RLC+ YGF  +   CTI+T C
Sbjct: 423 EEVGRLCRKYGFSSTCSPCTIYTGC 447


>ref|XP_002438164.1| hypothetical protein SORBIDRAFT_10g009040 [Sorghum bicolor]
           gi|241916387|gb|EER89531.1| hypothetical protein
           SORBIDRAFT_10g009040 [Sorghum bicolor]
          Length = 626

 Score =  116 bits (290), Expect = 2e-24
 Identities = 52/77 (67%), Positives = 67/77 (87%)
 Frame = +1

Query: 7   KKLSLVITAGPFTTTDNLLFKPLVELLAYATRKQPQLLMLLGPFVDSEHPEIRKATIDRS 186
           + LS VI AGP+TTTDNLLF+PL ELL+YA RKQPQLL+L+GPF+DS+HP+I+K T+D+S
Sbjct: 360 RALSSVIAAGPYTTTDNLLFEPLQELLSYACRKQPQLLILMGPFIDSDHPDIKKGTVDQS 419

Query: 187 FDDIFHSDILRRVQSLT 237
           F DIFH +ILR++Q  T
Sbjct: 420 FHDIFHFEILRKIQDFT 436



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 32/64 (50%), Positives = 43/64 (67%)
 Frame = +3

Query: 216 KKGTKSYNFLDSRMEDVLHSFTLFFCLIQLQDYAKYMGSAARVVLVPSLRDAFHDFVFPQ 395
           KKGT     +D    D+ H    F  L ++QD+ +Y+G+  RV+L+PS+RDA HDFVFPQ
Sbjct: 412 KKGT-----VDQSFHDIFH----FEILRKIQDFTQYLGNTVRVILIPSVRDAHHDFVFPQ 462

Query: 396 PAFD 407
           PAFD
Sbjct: 463 PAFD 466


>ref|XP_003578733.1| PREDICTED: DNA polymerase alpha subunit B-like [Brachypodium
           distachyon]
          Length = 625

 Score =  114 bits (284), Expect = 1e-23
 Identities = 51/75 (68%), Positives = 66/75 (88%)
 Frame = +1

Query: 13  LSLVITAGPFTTTDNLLFKPLVELLAYATRKQPQLLMLLGPFVDSEHPEIRKATIDRSFD 192
           LS VI AGP+TTTDNLLF+PL ELL+YA RKQPQLL+L+GPF+DS+HP+I++ T+D+SF 
Sbjct: 361 LSSVIAAGPYTTTDNLLFEPLQELLSYACRKQPQLLILMGPFIDSDHPDIKRGTVDQSFH 420

Query: 193 DIFHSDILRRVQSLT 237
           DIFH +ILR++Q  T
Sbjct: 421 DIFHFEILRKLQDFT 435



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 32/64 (50%), Positives = 42/64 (65%)
 Frame = +3

Query: 216 KKGTKSYNFLDSRMEDVLHSFTLFFCLIQLQDYAKYMGSAARVVLVPSLRDAFHDFVFPQ 395
           K+GT     +D    D+ H    F  L +LQD+ +Y+G + RV+LVPS+RDA HD VFPQ
Sbjct: 411 KRGT-----VDQSFHDIFH----FEILRKLQDFTQYLGHSVRVILVPSVRDAHHDTVFPQ 461

Query: 396 PAFD 407
           PAFD
Sbjct: 462 PAFD 465