BLASTX nr result
ID: Coptis25_contig00035277
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00035277 (407 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002265789.1| PREDICTED: DNA polymerase alpha subunit B [V... 124 1e-26 ref|XP_001772028.1| predicted protein [Physcomitrella patens sub... 88 4e-25 gb|AFK40175.1| unknown [Medicago truncatula] 108 5e-25 ref|XP_002438164.1| hypothetical protein SORBIDRAFT_10g009040 [S... 116 2e-24 ref|XP_003578733.1| PREDICTED: DNA polymerase alpha subunit B-li... 114 1e-23 >ref|XP_002265789.1| PREDICTED: DNA polymerase alpha subunit B [Vitis vinifera] gi|297738371|emb|CBI27572.3| unnamed protein product [Vitis vinifera] Length = 623 Score = 124 bits (310), Expect = 1e-26 Identities = 58/73 (79%), Positives = 67/73 (91%) Frame = +1 Query: 10 KLSLVITAGPFTTTDNLLFKPLVELLAYATRKQPQLLMLLGPFVDSEHPEIRKATIDRSF 189 +LSL++ AGPFTTTDNLLF+PL ELLAYA RK PQLL+LLGPFVDSEHPEIRK T+DRSF Sbjct: 357 ELSLMVAAGPFTTTDNLLFEPLTELLAYARRKMPQLLILLGPFVDSEHPEIRKGTVDRSF 416 Query: 190 DDIFHSDILRRVQ 228 D+IFH +ILRR+Q Sbjct: 417 DEIFHLEILRRLQ 429 Score = 67.0 bits (162), Expect = 2e-09 Identities = 35/63 (55%), Positives = 44/63 (69%) Frame = +3 Query: 216 KKGTKSYNFLDSRMEDVLHSFTLFFCLIQLQDYAKYMGSAARVVLVPSLRDAFHDFVFPQ 395 +KGT +D +++ H L +LQDY +YMGSAARV+LVPS+RDA HDFVFPQ Sbjct: 408 RKGT-----VDRSFDEIFH----LEILRRLQDYVEYMGSAARVILVPSIRDANHDFVFPQ 458 Query: 396 PAF 404 PAF Sbjct: 459 PAF 461 >ref|XP_001772028.1| predicted protein [Physcomitrella patens subsp. patens] gi|162676629|gb|EDQ63109.1| predicted protein [Physcomitrella patens subsp. patens] Length = 635 Score = 87.8 bits (216), Expect(2) = 4e-25 Identities = 39/70 (55%), Positives = 53/70 (75%) Frame = +1 Query: 19 LVITAGPFTTTDNLLFKPLVELLAYATRKQPQLLMLLGPFVDSEHPEIRKATIDRSFDDI 198 +V AGPFTT DNL ++PLVEL AYA + +P LL+L+GPFVDSEHP+I++ T+ + F I Sbjct: 357 IVAAAGPFTTNDNLAYEPLVELFAYAKKVRPNLLILMGPFVDSEHPQIKQGTVGKLFSHI 416 Query: 199 FHSDILRRVQ 228 F +I RV+ Sbjct: 417 FQEEIRMRVE 426 Score = 52.0 bits (123), Expect(2) = 4e-25 Identities = 21/37 (56%), Positives = 28/37 (75%) Frame = +3 Query: 297 IQLQDYAKYMGSAARVVLVPSLRDAFHDFVFPQPAFD 407 ++++DY + MG R+VLVPS RDA HD +FPQP FD Sbjct: 423 MRVEDYCEEMGDGCRIVLVPSHRDAHHDLIFPQPPFD 459 >gb|AFK40175.1| unknown [Medicago truncatula] Length = 447 Score = 108 bits (270), Expect(2) = 5e-25 Identities = 50/76 (65%), Positives = 62/76 (81%) Frame = +1 Query: 7 KKLSLVITAGPFTTTDNLLFKPLVELLAYATRKQPQLLMLLGPFVDSEHPEIRKATIDRS 186 ++LS++I AGPFTTTDNL F+PLVELLAYA R+ PQLL+LLGPF+DSEHP+I+K T+DR Sbjct: 353 RELSMIIAAGPFTTTDNLFFEPLVELLAYAKRRPPQLLVLLGPFIDSEHPDIKKGTVDRD 412 Query: 187 FDDIFHSDILRRVQSL 234 FD+IF L V L Sbjct: 413 FDEIFRFGSLEEVGRL 428 Score = 30.8 bits (68), Expect(2) = 5e-25 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +2 Query: 296 DPVTRLCQIYGFCCSSGSCTIFTRC 370 + V RLC+ YGF + CTI+T C Sbjct: 423 EEVGRLCRKYGFSSTCSPCTIYTGC 447 >ref|XP_002438164.1| hypothetical protein SORBIDRAFT_10g009040 [Sorghum bicolor] gi|241916387|gb|EER89531.1| hypothetical protein SORBIDRAFT_10g009040 [Sorghum bicolor] Length = 626 Score = 116 bits (290), Expect = 2e-24 Identities = 52/77 (67%), Positives = 67/77 (87%) Frame = +1 Query: 7 KKLSLVITAGPFTTTDNLLFKPLVELLAYATRKQPQLLMLLGPFVDSEHPEIRKATIDRS 186 + LS VI AGP+TTTDNLLF+PL ELL+YA RKQPQLL+L+GPF+DS+HP+I+K T+D+S Sbjct: 360 RALSSVIAAGPYTTTDNLLFEPLQELLSYACRKQPQLLILMGPFIDSDHPDIKKGTVDQS 419 Query: 187 FDDIFHSDILRRVQSLT 237 F DIFH +ILR++Q T Sbjct: 420 FHDIFHFEILRKIQDFT 436 Score = 66.2 bits (160), Expect = 3e-09 Identities = 32/64 (50%), Positives = 43/64 (67%) Frame = +3 Query: 216 KKGTKSYNFLDSRMEDVLHSFTLFFCLIQLQDYAKYMGSAARVVLVPSLRDAFHDFVFPQ 395 KKGT +D D+ H F L ++QD+ +Y+G+ RV+L+PS+RDA HDFVFPQ Sbjct: 412 KKGT-----VDQSFHDIFH----FEILRKIQDFTQYLGNTVRVILIPSVRDAHHDFVFPQ 462 Query: 396 PAFD 407 PAFD Sbjct: 463 PAFD 466 >ref|XP_003578733.1| PREDICTED: DNA polymerase alpha subunit B-like [Brachypodium distachyon] Length = 625 Score = 114 bits (284), Expect = 1e-23 Identities = 51/75 (68%), Positives = 66/75 (88%) Frame = +1 Query: 13 LSLVITAGPFTTTDNLLFKPLVELLAYATRKQPQLLMLLGPFVDSEHPEIRKATIDRSFD 192 LS VI AGP+TTTDNLLF+PL ELL+YA RKQPQLL+L+GPF+DS+HP+I++ T+D+SF Sbjct: 361 LSSVIAAGPYTTTDNLLFEPLQELLSYACRKQPQLLILMGPFIDSDHPDIKRGTVDQSFH 420 Query: 193 DIFHSDILRRVQSLT 237 DIFH +ILR++Q T Sbjct: 421 DIFHFEILRKLQDFT 435 Score = 62.8 bits (151), Expect = 3e-08 Identities = 32/64 (50%), Positives = 42/64 (65%) Frame = +3 Query: 216 KKGTKSYNFLDSRMEDVLHSFTLFFCLIQLQDYAKYMGSAARVVLVPSLRDAFHDFVFPQ 395 K+GT +D D+ H F L +LQD+ +Y+G + RV+LVPS+RDA HD VFPQ Sbjct: 411 KRGT-----VDQSFHDIFH----FEILRKLQDFTQYLGHSVRVILVPSVRDAHHDTVFPQ 461 Query: 396 PAFD 407 PAFD Sbjct: 462 PAFD 465