BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00035269
         (316 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_195043.1| pentatricopeptide repeat-containing protein [Ar...   112   3e-23
ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containi...   107   1e-21
emb|CBI20738.3| unnamed protein product [Vitis vinifera]              107   1e-21
ref|XP_002867196.1| pentatricopeptide repeat-containing protein ...   106   2e-21
ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   105   4e-21

>ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g33170 gi|4455331|emb|CAB36791.1| putative protein
           [Arabidopsis thaliana] gi|7270265|emb|CAB80034.1|
           putative protein [Arabidopsis thaliana]
           gi|332660786|gb|AEE86186.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  112 bits (280), Expect = 3e-23
 Identities = 56/93 (60%), Positives = 69/93 (74%)
 Frame = -1

Query: 310 LQNSITQRNLPLGKCTHARIIRFGDYSNRFLTNNLINMYSKCGVLDYARKLFDQSPNRDL 131
           L+N+IT  +L LGKCTHARI+ F +   RFL NNLI+MYSKCG L YAR++FD+ P+RDL
Sbjct: 46  LRNAITSSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDL 105

Query: 130 VTWNSILAGYAVSAETDDSKIFDGFCLFRGLRR 32
           V+WNSILA YA S+E     I   F LFR LR+
Sbjct: 106 VSWNSILAAYAQSSECVVENIQQAFLLFRILRQ 138



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 35/104 (33%), Positives = 54/104 (51%)
 Frame = -1

Query: 313 ILQNSITQRNLPLGKCTHARIIRFGDYSNRFLTNNLINMYSKCGVLDYARKLFDQSPNRD 134
           +L  ++   +L LG+  H   ++ G      ++N+LINMY K     +AR +FD    RD
Sbjct: 321 MLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERD 380

Query: 133 LVTWNSILAGYAVSAETDDSKIFDGFCLFRGLRRCEELSPTRLT 2
           L++WNS++AG A      +    +  CLF  L RC  L P + T
Sbjct: 381 LISWNSVIAGIA-----QNGLEVEAVCLFMQLLRC-GLKPDQYT 418


>ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
           [Vitis vinifera]
          Length = 1580

 Score =  107 bits (266), Expect = 1e-21
 Identities = 54/104 (51%), Positives = 71/104 (68%)
 Frame = -1

Query: 313 ILQNSITQRNLPLGKCTHARIIRFGDYSNRFLTNNLINMYSKCGVLDYARKLFDQSPNRD 134
           +L+ +I+  NL LGKCTHARI+  G   + FL+NNL+ MYSKCG L  AR++FD +P RD
Sbjct: 627 LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 686

Query: 133 LVTWNSILAGYAVSAETDDSKIFDGFCLFRGLRRCEELSPTRLT 2
           LVTWN+IL  YA S +++D    +G  LFR L R    S TR+T
Sbjct: 687 LVTWNAILGAYAASVDSNDGNAQEGLHLFR-LLRASLGSTTRMT 729



 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 11/100 (11%)
 Frame = -1

Query: 286  NLPLGKCTHARIIRFGDYSNRFLTNNLINMYSKCGVLDYARKLFDQSPNRDLVTWNSILA 107
            +L LGK  H   ++ G  S+  + N+L+NMYSK G   +AR++F+   + DL++WNS+++
Sbjct: 919  DLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMIS 978

Query: 106  GYAVSA-ETDDSKIF----------DGFCLFRGLRRCEEL 20
              A S+ E +   +F          D F L   LR C  L
Sbjct: 979  SCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSL 1018


>emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  107 bits (266), Expect = 1e-21
 Identities = 54/104 (51%), Positives = 71/104 (68%)
 Frame = -1

Query: 313 ILQNSITQRNLPLGKCTHARIIRFGDYSNRFLTNNLINMYSKCGVLDYARKLFDQSPNRD 134
           +L+ +I+  NL LGKCTHARI+  G   + FL+NNL+ MYSKCG L  AR++FD +P RD
Sbjct: 83  LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 142

Query: 133 LVTWNSILAGYAVSAETDDSKIFDGFCLFRGLRRCEELSPTRLT 2
           LVTWN+IL  YA S +++D    +G  LFR L R    S TR+T
Sbjct: 143 LVTWNAILGAYAASVDSNDGNAQEGLHLFR-LLRASLGSTTRMT 185



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 26/71 (36%), Positives = 46/71 (64%)
 Frame = -1

Query: 286 NLPLGKCTHARIIRFGDYSNRFLTNNLINMYSKCGVLDYARKLFDQSPNRDLVTWNSILA 107
           +L LGK  H   ++ G  S+  + N+L+NMYSK G   +AR++F+   + DL++WNS+++
Sbjct: 301 DLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMIS 360

Query: 106 GYAVSAETDDS 74
             A S+  ++S
Sbjct: 361 SCAQSSLEEES 371


>ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297313032|gb|EFH43455.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 997

 Score =  106 bits (264), Expect = 2e-21
 Identities = 52/93 (55%), Positives = 68/93 (73%)
 Frame = -1

Query: 310 LQNSITQRNLPLGKCTHARIIRFGDYSNRFLTNNLINMYSKCGVLDYARKLFDQSPNRDL 131
           L+++I+  +L LGKCTHARI+   +   RFL NNLI+MYSKCG L YAR++FD+ P RDL
Sbjct: 53  LRDAISTSDLMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDL 112

Query: 130 VTWNSILAGYAVSAETDDSKIFDGFCLFRGLRR 32
           V+WNSILA YA S+E     + + F LFR LR+
Sbjct: 113 VSWNSILAAYAQSSEGVVENVKEAFLLFRILRQ 145



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 33/95 (34%), Positives = 53/95 (55%)
 Frame = -1

Query: 313 ILQNSITQRNLPLGKCTHARIIRFGDYSNRFLTNNLINMYSKCGVLDYARKLFDQSPNRD 134
           +L  ++   +L LG+  H   ++ G      ++N+LINMY K   +  AR +F+    RD
Sbjct: 328 VLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERD 387

Query: 133 LVTWNSILAGYAVSAETDDSKIFDGFCLFRGLRRC 29
           L++WNS++AG A S    D ++ +  CLF  L RC
Sbjct: 388 LISWNSVIAGIAQS----DLEV-EAVCLFMQLLRC 417


>ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  105 bits (262), Expect = 4e-21
 Identities = 57/104 (54%), Positives = 73/104 (70%)
 Frame = -1

Query: 313 ILQNSITQRNLPLGKCTHARIIRFGDYSNRFLTNNLINMYSKCGVLDYARKLFDQSPNRD 134
           +L+++I   +L LGK  HARI+  GD  +R+LTNNLI MYSKCG L  AR++FD+S +RD
Sbjct: 617 LLRSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRD 676

Query: 133 LVTWNSILAGYAVSAETDDSKIFDGFCLFRGLRRCEELSPTRLT 2
           LVTWNSILA YA  A++    + +GF LF GL R    S TRLT
Sbjct: 677 LVTWNSILAAYAQFADSSYENVLEGFRLF-GLLREFGFSITRLT 719



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 36/104 (34%), Positives = 58/104 (55%)
 Frame = -1

Query: 313  ILQNSITQRNLPLGKCTHARIIRFGDYSNRFLTNNLINMYSKCGVLDYARKLFDQSPNRD 134
            IL  ++   +L LG+  HA +I+        ++N+L+NMYSK GV+  A K F  SP  D
Sbjct: 900  ILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELD 959

Query: 133  LVTWNSILAGYAVSAETDDSKIFDGFCLFRGLRRCEELSPTRLT 2
            L++WN++++ YA      ++   +  C FR L R + L P + T
Sbjct: 960  LISWNTMISSYA-----QNNLEMEAICTFRDLLR-DGLKPDQFT 997