BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00035264
         (411 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat...   144   1e-32
ref|XP_002532531.1| pentatricopeptide repeat-containing protein,...   134   1e-29
ref|XP_002302938.1| predicted protein [Populus trichocarpa] gi|2...   131   6e-29
ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat...   130   1e-28
ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat...   130   1e-28

>ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera] gi|296087085|emb|CBI33459.3|
           unnamed protein product [Vitis vinifera]
          Length = 592

 Score =  144 bits (362), Expect = 1e-32
 Identities = 66/90 (73%), Positives = 78/90 (86%)
 Frame = -2

Query: 410 PGVVTYNVLLTGLCRQGQTRNAKILLDAMLNLGVIPDDITYNILLEGHCKHGDPENFDKL 231
           PGVVTYNVLL GLC+QGQ +NA +LLDAMLNLGV+PDDITYNILLEGHCKHG+ E+FDKL
Sbjct: 503 PGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLEGHCKHGNREDFDKL 562

Query: 230 RGEKGLVSDFATYTTFIDELSKNSKKRQKR 141
           + EKGLV D+ +YT+ I +L K  K+RQKR
Sbjct: 563 QSEKGLVQDYGSYTSLIGDLRKTCKERQKR 592



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
 Frame = -2

Query: 410 PGVVTYNVLLTGLCRQGQTRNAKILLDAMLNLGVIPDDITYNILLEGHCKHGDPENFDKL 231
           P V+TYN L+ GLC+ G  R AK L+  M   G+ PD  TY +L++G CK GD E+  ++
Sbjct: 363 PDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEI 422

Query: 230 RGE---KGLVSDFATYTTFI 180
           R E   +G+  D   +T  I
Sbjct: 423 RKEMVKEGIELDNVAFTALI 442



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
 Frame = -2

Query: 410 PGVVTYNVLLTGLCRQGQTRNAKILLDAMLNLGVIPDDITYNILLEGHCKHGDPENFDKL 231
           P V TY+VL+ GLC++GQ  +A  L   M + G++P+D+T+  L+ GHC  G  +   ++
Sbjct: 293 PDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEI 352

Query: 230 RGE---KGLVSDFATYTTFIDELSKNSKKRQKR 141
             +   KG+  D  TY T I+ L K    R+ +
Sbjct: 353 YQQMLRKGVKPDVITYNTLINGLCKVGDLREAK 385



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
 Frame = -2

Query: 401 VTYNVLLTGLCRQGQTRNAKILLDAMLNLGVIPDDITYNILLEGHCKHGDPENFDKLRGE 222
           V +  L++G CR+GQ   A+  L  ML  G+ PDD TY +++ G CK GD +   KL  E
Sbjct: 436 VAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKE 495

Query: 221 ---KGLVSDFATYTTFIDELSKNSKKR 150
               G V    TY   ++ L K  + +
Sbjct: 496 MQCDGHVPGVVTYNVLLNGLCKQGQMK 522



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 42/130 (32%), Positives = 58/130 (44%), Gaps = 3/130 (2%)
 Frame = -2

Query: 410 PGVVTYNVLLTGLCRQGQTRNAKILLDAMLNLGVIPDDITYNILLEGHCKHGDPENFDKL 231
           P  VT+  L+ G C  G+      +   ML  GV PD ITYN L+ G CK GD     KL
Sbjct: 328 PNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKL 387

Query: 230 ---RGEKGLVSDFATYTTFIDELSKNSKKRQKR*YSIQKRICLPEGVVTSLQKYNAIYRD 60
                ++GL  D  TYT  ID   K           I+K + + EG+      + A+   
Sbjct: 388 VIEMTQRGLKPDKFTYTMLIDGCCKEGDLESA--LEIRKEM-VKEGIELDNVAFTALISG 444

Query: 59  WISQVVVVEA 30
           +  +  V+EA
Sbjct: 445 FCREGQVIEA 454


>ref|XP_002532531.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223527743|gb|EEF29847.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 212

 Score =  134 bits (336), Expect = 1e-29
 Identities = 59/89 (66%), Positives = 78/89 (87%)
 Frame = -2

Query: 410 PGVVTYNVLLTGLCRQGQTRNAKILLDAMLNLGVIPDDITYNILLEGHCKHGDPENFDKL 231
           PGVVTYNVL+ G C+Q Q +NA +LLDAM+NLGV+PDDITYNILLEGHCKHG+ ++F KL
Sbjct: 123 PGVVTYNVLMNGYCKQSQMKNANMLLDAMMNLGVVPDDITYNILLEGHCKHGNLQDFHKL 182

Query: 230 RGEKGLVSDFATYTTFIDELSKNSKKRQK 144
           + EKG+V+D+A+Y + ++ELS++SK RQK
Sbjct: 183 QSEKGVVADYASYKSLLNELSRSSKDRQK 211



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
 Frame = -2

Query: 404 VVTYNVLLTGLCRQGQTRNAKILLDAMLNLGVIPDDITYNILLEGHCKHGDPENFDKLRG 225
           +V +  +++GLC++G+  +A+  L  ML  G  PDD TY ++++G CK GD +   KL  
Sbjct: 55  IVAFTAIISGLCKEGKVIDAERALREMLKAGFKPDDATYTMVMDGFCKKGDMKTGFKLLK 114

Query: 224 E---KGLVSDFATYTTFIDELSKNSKKR 150
           E    G V    TY   ++   K S+ +
Sbjct: 115 EMQSDGHVPGVVTYNVLMNGYCKQSQMK 142


>ref|XP_002302938.1| predicted protein [Populus trichocarpa] gi|222844664|gb|EEE82211.1|
           predicted protein [Populus trichocarpa]
          Length = 599

 Score =  131 bits (329), Expect = 6e-29
 Identities = 60/90 (66%), Positives = 75/90 (83%)
 Frame = -2

Query: 410 PGVVTYNVLLTGLCRQGQTRNAKILLDAMLNLGVIPDDITYNILLEGHCKHGDPENFDKL 231
           PGV+TYNVL+ GLC+QGQ +NA +LL+AMLNLGV+PDDITYNILL+GHCKHG   +F  +
Sbjct: 510 PGVITYNVLMNGLCKQGQVKNADMLLNAMLNLGVVPDDITYNILLQGHCKHGKLGDFQNV 569

Query: 230 RGEKGLVSDFATYTTFIDELSKNSKKRQKR 141
           + E GLVSD+A+Y + + ELSK SK RQKR
Sbjct: 570 KTEMGLVSDYASYRSLLHELSKASKDRQKR 599



 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 36/107 (33%), Positives = 59/107 (55%), Gaps = 5/107 (4%)
 Frame = -2

Query: 410 PGVVTYNVLLTGLCRQGQTRNAKILLDAMLNLGVIPDDITYNILLEGHCKHGDPENFDKL 231
           P V TY+ L+ GLC++ Q  +A  L   M + G++P+D+T+  L+ G CK+G  +   ++
Sbjct: 300 PDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEI 359

Query: 230 RGE---KGLVSDFATYTTFIDELSKNSKKRQKR*Y--SIQKRICLPE 105
             +   KGL +D   Y T ID L K    R+ R +   + KR  +P+
Sbjct: 360 YQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPD 406



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
 Frame = -2

Query: 404 VVTYNVLLTGLCRQGQTRNAKILLDAMLNLGVIPDDITYNILLEGHCKHGDPENFDKLRG 225
           +V YN L+ GLC+ G  R A+  +  M   G+IPD  TY  LL+G CK GD E   ++R 
Sbjct: 372 LVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRK 431

Query: 224 E---KGLVSDFATYTTFIDELSKNSK 156
           E   +G+  D   +T  I  L ++ K
Sbjct: 432 EMVKEGIQLDNVAFTAIISGLCRDGK 457



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 29/85 (34%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
 Frame = -2

Query: 410 PGVVTYNVLLTGLCRQGQTRNAKILLDAMLNLGVIPDDITYNILLEGHCKHGDPENFDKL 231
           P V T+NVL+  LC++G+ ++A+++ D +   G+ P  +++N L+ G+CK G+ E   +L
Sbjct: 230 PNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRL 289

Query: 230 R---GEKGLVSDFATYTTFIDELSK 165
           +    E  +  D  TY+  ID L K
Sbjct: 290 KMVMEEFRVFPDVFTYSALIDGLCK 314


>ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  130 bits (327), Expect = 1e-28
 Identities = 60/90 (66%), Positives = 74/90 (82%)
 Frame = -2

Query: 410 PGVVTYNVLLTGLCRQGQTRNAKILLDAMLNLGVIPDDITYNILLEGHCKHGDPENFDKL 231
           PGV+TYNVL+ GLC+QGQ +NA +LL+AMLNLGV PDDITYNILLEGHCK+G  E+  KL
Sbjct: 501 PGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGKAEDLLKL 560

Query: 230 RGEKGLVSDFATYTTFIDELSKNSKKRQKR 141
           R EKGL+ D+A YT+ + E +K+ K RQKR
Sbjct: 561 RNEKGLIVDYAYYTSLVSEYNKSLKDRQKR 590



 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
 Frame = -2

Query: 410 PGVVTYNVLLTGLCRQGQTRNAKILLDAMLNLGVIPDDITYNILLEGHCKHGDPENFDKL 231
           P +V YN LL GLC+ G    A+ L+D M  +G+ PD ITY  L++G+CK GD E+  ++
Sbjct: 361 PDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEI 420

Query: 230 R---GEKGLVSDFATYTTFIDELSKNSKKR 150
           R    E+G+V D   +T  I    ++ + R
Sbjct: 421 RKGMNEEGVVLDNVAFTALISGFCRDGRVR 450


>ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  130 bits (327), Expect = 1e-28
 Identities = 60/90 (66%), Positives = 74/90 (82%)
 Frame = -2

Query: 410 PGVVTYNVLLTGLCRQGQTRNAKILLDAMLNLGVIPDDITYNILLEGHCKHGDPENFDKL 231
           PGV+TYNVL+ GLC+QGQ +NA +LL+AMLNLGV PDDITYNILLEGHCK+G  E+  KL
Sbjct: 501 PGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGKAEDLLKL 560

Query: 230 RGEKGLVSDFATYTTFIDELSKNSKKRQKR 141
           R EKGL+ D+A YT+ + E +K+ K RQKR
Sbjct: 561 RNEKGLIVDYAYYTSLVSEYNKSLKDRQKR 590



 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
 Frame = -2

Query: 410 PGVVTYNVLLTGLCRQGQTRNAKILLDAMLNLGVIPDDITYNILLEGHCKHGDPENFDKL 231
           P +V YN LL GLC+ G    A+ L+D M  +G+ PD ITY  L++G+CK GD E+  ++
Sbjct: 361 PDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEI 420

Query: 230 R---GEKGLVSDFATYTTFIDELSKNSKKR 150
           R    E+G+V D   +T  I    ++ + R
Sbjct: 421 RKGMNEEGVVLDNVAFTALISGFCRDGRVR 450



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 34/85 (40%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
 Frame = -2

Query: 410 PGVVTYNVLLTGLCRQGQTRNAKILLDAMLNLGVIPDDITYNILLEGHCKHGDPENFDKL 231
           P  +T+  L+ G CR  +  +A      ML +GV PD + YN LL G CK GD     KL
Sbjct: 326 PNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKL 385

Query: 230 RGEK---GLVSDFATYTTFIDELSK 165
             E    G+  D  TYTT ID   K
Sbjct: 386 VDEMRMVGMKPDKITYTTLIDGYCK 410