BLASTX nr result
ID: Coptis25_contig00035227
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00035227 (814 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI15289.3| unnamed protein product [Vitis vinifera] 112 7e-23 ref|XP_002266698.1| PREDICTED: pentatricopeptide repeat-containi... 107 2e-21 ref|XP_002511505.1| pentatricopeptide repeat-containing protein,... 98 2e-18 ref|XP_002321537.1| predicted protein [Populus trichocarpa] gi|2... 98 2e-18 ref|XP_004138146.1| PREDICTED: pentatricopeptide repeat-containi... 88 2e-15 >emb|CBI15289.3| unnamed protein product [Vitis vinifera] Length = 793 Score = 112 bits (281), Expect = 7e-23 Identities = 78/237 (32%), Positives = 119/237 (50%), Gaps = 6/237 (2%) Frame = +1 Query: 118 IYAKIMLRAKQVGQLSQCARSFFISGSRSSTADGTPCTGSEDENRVPRRQQRNNKILLPQ 297 +Y +IMLR KQ+G LS ARS ISG+RSST DG C SEDE V +Q N++L+ Q Sbjct: 23 LYLQIMLRTKQIGPLSNSARSILISGTRSSTPDGNSCPCSEDETCVSTKQHARNEVLIMQ 82 Query: 298 KTSTIASHPPGRAGPLPYGDGSGTVGHCKTKTGVYXXXXXXXXXXXXXXXXXXXXXALHG 477 K +T+AS R GPL GD VG K ++ + + Sbjct: 83 KQTTLASKTAARVGPLFLGDAVKVVGSQKVESVEHATSLAQVVAAPRSVVGSDCVSYVSD 142 Query: 478 DVNPKQRDVRSSVLGAHNSVKTRVPAVAALSNLVSYKPPVSDRNEKFRTPHSGIVDSIRP 657 +V V + + + ++ + AV LS+LV+YK P+SD + + P + +VD +P Sbjct: 143 NVGVNNDAVHAPPI-SDQFIRAGIVAVNFLSDLVNYKIPMSDGSGMLKLPQNCMVDPTKP 201 Query: 658 ASNIESSH-KETLKRENSKLSVQ-----MGGSNSTANSSNRKCAVEKPESVKAVYHL 810 S I+S++ K K + SK+ + SNST++ + + +K SVK H+ Sbjct: 202 LSKIKSTNIKPIRKGKFSKVRAESSANIAAASNSTSSYHSTRGKGDKSGSVKGCSHV 258 >ref|XP_002266698.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74750 [Vitis vinifera] Length = 875 Score = 107 bits (268), Expect = 2e-21 Identities = 76/232 (32%), Positives = 115/232 (49%), Gaps = 6/232 (2%) Frame = +1 Query: 133 MLRAKQVGQLSQCARSFFISGSRSSTADGTPCTGSEDENRVPRRQQRNNKILLPQKTSTI 312 MLR KQ+G LS ARS ISG+RSST DG C SEDE V +Q N++L+ QK +T+ Sbjct: 1 MLRTKQIGPLSNSARSILISGTRSSTPDGNSCPCSEDETCVSTKQHARNEVLIMQKQTTL 60 Query: 313 ASHPPGRAGPLPYGDGSGTVGHCKTKTGVYXXXXXXXXXXXXXXXXXXXXXALHGDVNPK 492 AS R GPL GD VG K ++ + + +V Sbjct: 61 ASKTAARVGPLFLGDAVKVVGSQKVESVEHATSLAQVVAAPRSVVGSDCVSYVSDNVGVN 120 Query: 493 QRDVRSSVLGAHNSVKTRVPAVAALSNLVSYKPPVSDRNEKFRTPHSGIVDSIRPASNIE 672 V + + + ++ + AV LS+LV+YK P+SD + + P + +VD +P S I+ Sbjct: 121 NDAVHAPPI-SDQFIRAGIVAVNFLSDLVNYKIPMSDGSGMLKLPQNCMVDPTKPLSKIK 179 Query: 673 SSH-KETLKRENSKLSVQ-----MGGSNSTANSSNRKCAVEKPESVKAVYHL 810 S++ K K + SK+ + SNST++ + + +K SVK H+ Sbjct: 180 STNIKPIRKGKFSKVRAESSANIAAASNSTSSYHSTRGKGDKSGSVKGCSHV 231 >ref|XP_002511505.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223550620|gb|EEF52107.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 876 Score = 98.2 bits (243), Expect = 2e-18 Identities = 77/235 (32%), Positives = 113/235 (48%), Gaps = 8/235 (3%) Frame = +1 Query: 133 MLRAKQVGQLSQCARSFFISGSRSSTADGTPCTGSEDENRVPRRQQRNNKILLPQKTSTI 312 MLRAKQ+ LS ARSFF+SGSR ST+DG+ CT SEDE+ +PRRQQ N +L Q+ + Sbjct: 1 MLRAKQLSNLSSNARSFFLSGSRCSTSDGSSCTCSEDESCLPRRQQTRNNAVLAQRGPAL 60 Query: 313 ASHPPGRAGPLP-YGD-GSGTVGHCKTKTGVYXXXXXXXXXXXXXXXXXXXXXALHGDVN 486 R GD G V H K + ++ Sbjct: 61 VPKASARVSQTSLLGDAGKLLVPH---KVESVECPTLPQVVSAPISIRKSDCVSYASGID 117 Query: 487 PKQRDV-RSSVLGAHNSVKTRVPAVAALSNLVSYKPPVSDRNEKFRTPHSGIVDSIRPAS 663 + D+ SS + K + AV+ LS+LV+YK P++D +P + +VD RP S Sbjct: 118 AVENDIPYSSPPISDQFFKAGIAAVSFLSDLVNYKLPITD-GSGINSPKNCMVDPTRPQS 176 Query: 664 NIESSHKETLKREN-----SKLSVQMGGSNSTANSSNRKCAVEKPESVKAVYHLS 813 + SS+ + ++REN K S + S+ST+N + + EK +K +S Sbjct: 177 TVRSSNVKPIRRENCSKVYPKASPEAAVSSSTSNYDSTRDKSEKSSFIKGSKRVS 231 >ref|XP_002321537.1| predicted protein [Populus trichocarpa] gi|222868533|gb|EEF05664.1| predicted protein [Populus trichocarpa] Length = 834 Score = 97.8 bits (242), Expect = 2e-18 Identities = 83/236 (35%), Positives = 115/236 (48%), Gaps = 9/236 (3%) Frame = +1 Query: 133 MLRAKQVGQLSQCARSFFISGSRSSTADG-TPCTGSEDENRVPRRQQRNNKILLPQKTST 309 MLRAKQ+G LS ARSFF+SGSR S DG + CT SEDE V RQQ N ILL QK S Sbjct: 1 MLRAKQLGNLSSSARSFFLSGSRCSATDGSSSCTCSEDETCVSTRQQPRNSILLAQKPSN 60 Query: 310 IASHPPGRAGPLPYGDGSGTVGHCKTKTGVYXXXXXXXXXXXXXXXXXXXXXALHGDVNP 489 S R GDGS + K+ G+ A+ D+ Sbjct: 61 FGSKTSARVEASVSGDGSSFLLPQKSSCGM----------------SGCVSYAIGIDI-- 102 Query: 490 KQRDV-RSSVLGAHNSVKTRVPAVAALSNLVSYKPPVSDRNEKFRTPHSGIVDSIRPASN 666 ++DV SS + V+ + AV+ LS+LV+YK P SD + + ++D R SN Sbjct: 103 AEKDVGHSSPPISDQFVRVGIAAVSFLSDLVNYKLPTSD-GTVINSTINCMIDPTRQLSN 161 Query: 667 IESSHKETLKRE-------NSKLSVQMGGSNSTANSSNRKCAVEKPESVKAVYHLS 813 I+SS+ + ++RE NS + + GSN+ N ++ K K V+ +S Sbjct: 162 IKSSNVKPIRRENFTKAYPNSSAEIPV-GSNAAVNYNSMKDRGNKSSFVRGFKQVS 216 >ref|XP_004138146.1| PREDICTED: pentatricopeptide repeat-containing protein At1g18900-like [Cucumis sativus] Length = 874 Score = 88.2 bits (217), Expect = 2e-15 Identities = 69/214 (32%), Positives = 99/214 (46%), Gaps = 5/214 (2%) Frame = +1 Query: 133 MLRAKQVGQLSQCARSFFISGSRSSTADGTPCTGSEDENRVPRRQQRNNKILLPQKTSTI 312 MLRAKQ+G LS ARSFF+SGSR + ADG CT EDE V RQ N+ L QK ST+ Sbjct: 1 MLRAKQIGSLSNSARSFFLSGSRCN-ADGASCTCPEDETCVSERQNARNETLPSQKPSTL 59 Query: 313 ASHPPGRAGPLPYGDGSGTVGHCKTKTGVYXXXXXXXXXXXXXXXXXXXXXALHGDVNPK 492 ++ R GPL + + + KT +N Sbjct: 60 VANSSPRVGPLIAEEAAKVIVSHKTDNVDLSVSIRQVANTGPNHQRGAECVRYASGLNTV 119 Query: 493 QRDVRSSVLGAHNSVKTRVPAVAALSNLVSYKPPVSDRNEKFRTPHSGIVDSIRPASNIE 672 +S A VK + AV S+ V++K P SD F + + +VD R ++++ Sbjct: 120 LDGECTSPRIADQVVKAGIMAVNLFSDFVNFKIPSSDYGGTFSSSKNCMVDPARSITSVK 179 Query: 673 SSHKETLKREN-----SKLSVQMGGSNSTANSSN 759 S + L+REN S+ SV++ + +SSN Sbjct: 180 PSKIKHLRRENISRVHSRPSVEIPVDSKPQSSSN 213