BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00035227
         (814 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI15289.3| unnamed protein product [Vitis vinifera]              112   7e-23
ref|XP_002266698.1| PREDICTED: pentatricopeptide repeat-containi...   107   2e-21
ref|XP_002511505.1| pentatricopeptide repeat-containing protein,...    98   2e-18
ref|XP_002321537.1| predicted protein [Populus trichocarpa] gi|2...    98   2e-18
ref|XP_004138146.1| PREDICTED: pentatricopeptide repeat-containi...    88   2e-15

>emb|CBI15289.3| unnamed protein product [Vitis vinifera]
          Length = 793

 Score =  112 bits (281), Expect = 7e-23
 Identities = 78/237 (32%), Positives = 119/237 (50%), Gaps = 6/237 (2%)
 Frame = +1

Query: 118 IYAKIMLRAKQVGQLSQCARSFFISGSRSSTADGTPCTGSEDENRVPRRQQRNNKILLPQ 297
           +Y +IMLR KQ+G LS  ARS  ISG+RSST DG  C  SEDE  V  +Q   N++L+ Q
Sbjct: 23  LYLQIMLRTKQIGPLSNSARSILISGTRSSTPDGNSCPCSEDETCVSTKQHARNEVLIMQ 82

Query: 298 KTSTIASHPPGRAGPLPYGDGSGTVGHCKTKTGVYXXXXXXXXXXXXXXXXXXXXXALHG 477
           K +T+AS    R GPL  GD    VG  K ++  +                      +  
Sbjct: 83  KQTTLASKTAARVGPLFLGDAVKVVGSQKVESVEHATSLAQVVAAPRSVVGSDCVSYVSD 142

Query: 478 DVNPKQRDVRSSVLGAHNSVKTRVPAVAALSNLVSYKPPVSDRNEKFRTPHSGIVDSIRP 657
           +V      V +  + +   ++  + AV  LS+LV+YK P+SD +   + P + +VD  +P
Sbjct: 143 NVGVNNDAVHAPPI-SDQFIRAGIVAVNFLSDLVNYKIPMSDGSGMLKLPQNCMVDPTKP 201

Query: 658 ASNIESSH-KETLKRENSKLSVQ-----MGGSNSTANSSNRKCAVEKPESVKAVYHL 810
            S I+S++ K   K + SK+  +        SNST++  + +   +K  SVK   H+
Sbjct: 202 LSKIKSTNIKPIRKGKFSKVRAESSANIAAASNSTSSYHSTRGKGDKSGSVKGCSHV 258


>ref|XP_002266698.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74750
           [Vitis vinifera]
          Length = 875

 Score =  107 bits (268), Expect = 2e-21
 Identities = 76/232 (32%), Positives = 115/232 (49%), Gaps = 6/232 (2%)
 Frame = +1

Query: 133 MLRAKQVGQLSQCARSFFISGSRSSTADGTPCTGSEDENRVPRRQQRNNKILLPQKTSTI 312
           MLR KQ+G LS  ARS  ISG+RSST DG  C  SEDE  V  +Q   N++L+ QK +T+
Sbjct: 1   MLRTKQIGPLSNSARSILISGTRSSTPDGNSCPCSEDETCVSTKQHARNEVLIMQKQTTL 60

Query: 313 ASHPPGRAGPLPYGDGSGTVGHCKTKTGVYXXXXXXXXXXXXXXXXXXXXXALHGDVNPK 492
           AS    R GPL  GD    VG  K ++  +                      +  +V   
Sbjct: 61  ASKTAARVGPLFLGDAVKVVGSQKVESVEHATSLAQVVAAPRSVVGSDCVSYVSDNVGVN 120

Query: 493 QRDVRSSVLGAHNSVKTRVPAVAALSNLVSYKPPVSDRNEKFRTPHSGIVDSIRPASNIE 672
              V +  + +   ++  + AV  LS+LV+YK P+SD +   + P + +VD  +P S I+
Sbjct: 121 NDAVHAPPI-SDQFIRAGIVAVNFLSDLVNYKIPMSDGSGMLKLPQNCMVDPTKPLSKIK 179

Query: 673 SSH-KETLKRENSKLSVQ-----MGGSNSTANSSNRKCAVEKPESVKAVYHL 810
           S++ K   K + SK+  +        SNST++  + +   +K  SVK   H+
Sbjct: 180 STNIKPIRKGKFSKVRAESSANIAAASNSTSSYHSTRGKGDKSGSVKGCSHV 231


>ref|XP_002511505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550620|gb|EEF52107.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 876

 Score = 98.2 bits (243), Expect = 2e-18
 Identities = 77/235 (32%), Positives = 113/235 (48%), Gaps = 8/235 (3%)
 Frame = +1

Query: 133 MLRAKQVGQLSQCARSFFISGSRSSTADGTPCTGSEDENRVPRRQQRNNKILLPQKTSTI 312
           MLRAKQ+  LS  ARSFF+SGSR ST+DG+ CT SEDE+ +PRRQQ  N  +L Q+   +
Sbjct: 1   MLRAKQLSNLSSNARSFFLSGSRCSTSDGSSCTCSEDESCLPRRQQTRNNAVLAQRGPAL 60

Query: 313 ASHPPGRAGPLP-YGD-GSGTVGHCKTKTGVYXXXXXXXXXXXXXXXXXXXXXALHGDVN 486
                 R       GD G   V H   K                         +    ++
Sbjct: 61  VPKASARVSQTSLLGDAGKLLVPH---KVESVECPTLPQVVSAPISIRKSDCVSYASGID 117

Query: 487 PKQRDV-RSSVLGAHNSVKTRVPAVAALSNLVSYKPPVSDRNEKFRTPHSGIVDSIRPAS 663
             + D+  SS   +    K  + AV+ LS+LV+YK P++D      +P + +VD  RP S
Sbjct: 118 AVENDIPYSSPPISDQFFKAGIAAVSFLSDLVNYKLPITD-GSGINSPKNCMVDPTRPQS 176

Query: 664 NIESSHKETLKREN-----SKLSVQMGGSNSTANSSNRKCAVEKPESVKAVYHLS 813
            + SS+ + ++REN      K S +   S+ST+N  + +   EK   +K    +S
Sbjct: 177 TVRSSNVKPIRRENCSKVYPKASPEAAVSSSTSNYDSTRDKSEKSSFIKGSKRVS 231


>ref|XP_002321537.1| predicted protein [Populus trichocarpa] gi|222868533|gb|EEF05664.1|
           predicted protein [Populus trichocarpa]
          Length = 834

 Score = 97.8 bits (242), Expect = 2e-18
 Identities = 83/236 (35%), Positives = 115/236 (48%), Gaps = 9/236 (3%)
 Frame = +1

Query: 133 MLRAKQVGQLSQCARSFFISGSRSSTADG-TPCTGSEDENRVPRRQQRNNKILLPQKTST 309
           MLRAKQ+G LS  ARSFF+SGSR S  DG + CT SEDE  V  RQQ  N ILL QK S 
Sbjct: 1   MLRAKQLGNLSSSARSFFLSGSRCSATDGSSSCTCSEDETCVSTRQQPRNSILLAQKPSN 60

Query: 310 IASHPPGRAGPLPYGDGSGTVGHCKTKTGVYXXXXXXXXXXXXXXXXXXXXXALHGDVNP 489
             S    R      GDGS  +   K+  G+                      A+  D+  
Sbjct: 61  FGSKTSARVEASVSGDGSSFLLPQKSSCGM----------------SGCVSYAIGIDI-- 102

Query: 490 KQRDV-RSSVLGAHNSVKTRVPAVAALSNLVSYKPPVSDRNEKFRTPHSGIVDSIRPASN 666
            ++DV  SS   +   V+  + AV+ LS+LV+YK P SD      +  + ++D  R  SN
Sbjct: 103 AEKDVGHSSPPISDQFVRVGIAAVSFLSDLVNYKLPTSD-GTVINSTINCMIDPTRQLSN 161

Query: 667 IESSHKETLKRE-------NSKLSVQMGGSNSTANSSNRKCAVEKPESVKAVYHLS 813
           I+SS+ + ++RE       NS   + + GSN+  N ++ K    K   V+    +S
Sbjct: 162 IKSSNVKPIRRENFTKAYPNSSAEIPV-GSNAAVNYNSMKDRGNKSSFVRGFKQVS 216


>ref|XP_004138146.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Cucumis sativus]
          Length = 874

 Score = 88.2 bits (217), Expect = 2e-15
 Identities = 69/214 (32%), Positives = 99/214 (46%), Gaps = 5/214 (2%)
 Frame = +1

Query: 133 MLRAKQVGQLSQCARSFFISGSRSSTADGTPCTGSEDENRVPRRQQRNNKILLPQKTSTI 312
           MLRAKQ+G LS  ARSFF+SGSR + ADG  CT  EDE  V  RQ   N+ L  QK ST+
Sbjct: 1   MLRAKQIGSLSNSARSFFLSGSRCN-ADGASCTCPEDETCVSERQNARNETLPSQKPSTL 59

Query: 313 ASHPPGRAGPLPYGDGSGTVGHCKTKTGVYXXXXXXXXXXXXXXXXXXXXXALHGDVNPK 492
            ++   R GPL   + +  +   KT                               +N  
Sbjct: 60  VANSSPRVGPLIAEEAAKVIVSHKTDNVDLSVSIRQVANTGPNHQRGAECVRYASGLNTV 119

Query: 493 QRDVRSSVLGAHNSVKTRVPAVAALSNLVSYKPPVSDRNEKFRTPHSGIVDSIRPASNIE 672
                +S   A   VK  + AV   S+ V++K P SD    F +  + +VD  R  ++++
Sbjct: 120 LDGECTSPRIADQVVKAGIMAVNLFSDFVNFKIPSSDYGGTFSSSKNCMVDPARSITSVK 179

Query: 673 SSHKETLKREN-----SKLSVQMGGSNSTANSSN 759
            S  + L+REN     S+ SV++   +   +SSN
Sbjct: 180 PSKIKHLRRENISRVHSRPSVEIPVDSKPQSSSN 213