BLASTX nr result
ID: Coptis25_contig00035199
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00035199 (886 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002278056.1| PREDICTED: signal recognition particle recep... 49 2e-11 ref|XP_004144723.1| PREDICTED: signal recognition particle recep... 48 3e-11 ref|XP_004172238.1| PREDICTED: LOW QUALITY PROTEIN: signal recog... 48 3e-11 ref|XP_002309350.1| predicted protein [Populus trichocarpa] gi|2... 49 9e-10 ref|XP_003527179.1| PREDICTED: signal recognition particle recep... 49 1e-09 >ref|XP_002278056.1| PREDICTED: signal recognition particle receptor subunit alpha [Vitis vinifera] Length = 616 Score = 48.9 bits (115), Expect(2) = 2e-11 Identities = 23/29 (79%), Positives = 23/29 (79%) Frame = +3 Query: 405 KGNGSSEAGVFDVNKLQKLRTKGGKKTDT 491 K N SS G FDVNKLQKLR KGGKKTDT Sbjct: 196 KENASSNIGAFDVNKLQKLRAKGGKKTDT 224 Score = 46.2 bits (108), Expect(2) = 2e-11 Identities = 18/37 (48%), Positives = 30/37 (81%) Frame = +2 Query: 575 SDPKLDFTDPVEERGEQNIEVVAANPGESMMDEKKFL 685 ++ KLDFTDP ++ G++N +VAA+ GESMMD+++ + Sbjct: 250 TESKLDFTDPADQNGDENAVIVAADEGESMMDKEEIV 286 >ref|XP_004144723.1| PREDICTED: signal recognition particle receptor subunit alpha homolog [Cucumis sativus] Length = 617 Score = 47.8 bits (112), Expect(2) = 3e-11 Identities = 20/35 (57%), Positives = 30/35 (85%) Frame = +2 Query: 575 SDPKLDFTDPVEERGEQNIEVVAANPGESMMDEKK 679 ++ KLDFTDPV E G+ NI+V+AA+ G+SMMD+++ Sbjct: 251 TEAKLDFTDPVGENGDNNIDVLAADQGQSMMDKEE 285 Score = 47.0 bits (110), Expect(2) = 3e-11 Identities = 22/28 (78%), Positives = 23/28 (82%) Frame = +3 Query: 405 KGNGSSEAGVFDVNKLQKLRTKGGKKTD 488 K N SS G FDVNKLQKLR+KGGKKTD Sbjct: 197 KENTSSNVGAFDVNKLQKLRSKGGKKTD 224 >ref|XP_004172238.1| PREDICTED: LOW QUALITY PROTEIN: signal recognition particle receptor subunit alpha homolog, partial [Cucumis sativus] Length = 291 Score = 47.8 bits (112), Expect(2) = 3e-11 Identities = 20/35 (57%), Positives = 30/35 (85%) Frame = +2 Query: 575 SDPKLDFTDPVEERGEQNIEVVAANPGESMMDEKK 679 ++ KLDFTDPV E G+ NI+V+AA+ G+SMMD+++ Sbjct: 251 TEAKLDFTDPVGENGDNNIDVLAADQGQSMMDKEE 285 Score = 47.0 bits (110), Expect(2) = 3e-11 Identities = 22/28 (78%), Positives = 23/28 (82%) Frame = +3 Query: 405 KGNGSSEAGVFDVNKLQKLRTKGGKKTD 488 K N SS G FDVNKLQKLR+KGGKKTD Sbjct: 197 KENTSSNVGAFDVNKLQKLRSKGGKKTD 224 >ref|XP_002309350.1| predicted protein [Populus trichocarpa] gi|222855326|gb|EEE92873.1| predicted protein [Populus trichocarpa] Length = 624 Score = 49.3 bits (116), Expect(3) = 9e-10 Identities = 23/36 (63%), Positives = 29/36 (80%) Frame = +2 Query: 578 DPKLDFTDPVEERGEQNIEVVAANPGESMMDEKKFL 685 D KLDFTD VE G +NIEVVAA+ GESMMD+++ + Sbjct: 259 DAKLDFTDHVEGNGNENIEVVAADQGESMMDKEEIV 294 Score = 38.1 bits (87), Expect(3) = 9e-10 Identities = 18/27 (66%), Positives = 20/27 (74%) Frame = +3 Query: 405 KGNGSSEAGVFDVNKLQKLRTKGGKKT 485 K N SS FDV KLQKL++KGGKKT Sbjct: 202 KENASSNNEAFDVTKLQKLKSKGGKKT 228 Score = 21.6 bits (44), Expect(3) = 9e-10 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +1 Query: 331 KLENGISNGHESKV 372 KLENG SNG+ + V Sbjct: 175 KLENGHSNGNHNAV 188 >ref|XP_003527179.1| PREDICTED: signal recognition particle receptor subunit alpha-like [Glycine max] Length = 623 Score = 48.5 bits (114), Expect(2) = 1e-09 Identities = 22/27 (81%), Positives = 23/27 (85%) Frame = +3 Query: 411 NGSSEAGVFDVNKLQKLRTKGGKKTDT 491 NGS G FDV+KLQKLRTKGGKKTDT Sbjct: 199 NGSPNVGAFDVHKLQKLRTKGGKKTDT 225 Score = 40.8 bits (94), Expect(2) = 1e-09 Identities = 21/38 (55%), Positives = 30/38 (78%), Gaps = 1/38 (2%) Frame = +2 Query: 575 SDPKLDFTDPVEERGEQNIE-VVAANPGESMMDEKKFL 685 ++ KLDFTD E GE+NI+ VVAA+ GESMMD+++ + Sbjct: 252 TETKLDFTDHSGEDGERNIDFVVAADQGESMMDKEEIV 289