BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00035199
         (886 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278056.1| PREDICTED: signal recognition particle recep...    49   2e-11
ref|XP_004144723.1| PREDICTED: signal recognition particle recep...    48   3e-11
ref|XP_004172238.1| PREDICTED: LOW QUALITY PROTEIN: signal recog...    48   3e-11
ref|XP_002309350.1| predicted protein [Populus trichocarpa] gi|2...    49   9e-10
ref|XP_003527179.1| PREDICTED: signal recognition particle recep...    49   1e-09

>ref|XP_002278056.1| PREDICTED: signal recognition particle receptor subunit alpha
           [Vitis vinifera]
          Length = 616

 Score = 48.9 bits (115), Expect(2) = 2e-11
 Identities = 23/29 (79%), Positives = 23/29 (79%)
 Frame = +3

Query: 405 KGNGSSEAGVFDVNKLQKLRTKGGKKTDT 491
           K N SS  G FDVNKLQKLR KGGKKTDT
Sbjct: 196 KENASSNIGAFDVNKLQKLRAKGGKKTDT 224



 Score = 46.2 bits (108), Expect(2) = 2e-11
 Identities = 18/37 (48%), Positives = 30/37 (81%)
 Frame = +2

Query: 575 SDPKLDFTDPVEERGEQNIEVVAANPGESMMDEKKFL 685
           ++ KLDFTDP ++ G++N  +VAA+ GESMMD+++ +
Sbjct: 250 TESKLDFTDPADQNGDENAVIVAADEGESMMDKEEIV 286


>ref|XP_004144723.1| PREDICTED: signal recognition particle receptor subunit alpha
           homolog [Cucumis sativus]
          Length = 617

 Score = 47.8 bits (112), Expect(2) = 3e-11
 Identities = 20/35 (57%), Positives = 30/35 (85%)
 Frame = +2

Query: 575 SDPKLDFTDPVEERGEQNIEVVAANPGESMMDEKK 679
           ++ KLDFTDPV E G+ NI+V+AA+ G+SMMD+++
Sbjct: 251 TEAKLDFTDPVGENGDNNIDVLAADQGQSMMDKEE 285



 Score = 47.0 bits (110), Expect(2) = 3e-11
 Identities = 22/28 (78%), Positives = 23/28 (82%)
 Frame = +3

Query: 405 KGNGSSEAGVFDVNKLQKLRTKGGKKTD 488
           K N SS  G FDVNKLQKLR+KGGKKTD
Sbjct: 197 KENTSSNVGAFDVNKLQKLRSKGGKKTD 224


>ref|XP_004172238.1| PREDICTED: LOW QUALITY PROTEIN: signal recognition particle
           receptor subunit alpha homolog, partial [Cucumis
           sativus]
          Length = 291

 Score = 47.8 bits (112), Expect(2) = 3e-11
 Identities = 20/35 (57%), Positives = 30/35 (85%)
 Frame = +2

Query: 575 SDPKLDFTDPVEERGEQNIEVVAANPGESMMDEKK 679
           ++ KLDFTDPV E G+ NI+V+AA+ G+SMMD+++
Sbjct: 251 TEAKLDFTDPVGENGDNNIDVLAADQGQSMMDKEE 285



 Score = 47.0 bits (110), Expect(2) = 3e-11
 Identities = 22/28 (78%), Positives = 23/28 (82%)
 Frame = +3

Query: 405 KGNGSSEAGVFDVNKLQKLRTKGGKKTD 488
           K N SS  G FDVNKLQKLR+KGGKKTD
Sbjct: 197 KENTSSNVGAFDVNKLQKLRSKGGKKTD 224


>ref|XP_002309350.1| predicted protein [Populus trichocarpa] gi|222855326|gb|EEE92873.1|
           predicted protein [Populus trichocarpa]
          Length = 624

 Score = 49.3 bits (116), Expect(3) = 9e-10
 Identities = 23/36 (63%), Positives = 29/36 (80%)
 Frame = +2

Query: 578 DPKLDFTDPVEERGEQNIEVVAANPGESMMDEKKFL 685
           D KLDFTD VE  G +NIEVVAA+ GESMMD+++ +
Sbjct: 259 DAKLDFTDHVEGNGNENIEVVAADQGESMMDKEEIV 294



 Score = 38.1 bits (87), Expect(3) = 9e-10
 Identities = 18/27 (66%), Positives = 20/27 (74%)
 Frame = +3

Query: 405 KGNGSSEAGVFDVNKLQKLRTKGGKKT 485
           K N SS    FDV KLQKL++KGGKKT
Sbjct: 202 KENASSNNEAFDVTKLQKLKSKGGKKT 228



 Score = 21.6 bits (44), Expect(3) = 9e-10
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 331 KLENGISNGHESKV 372
           KLENG SNG+ + V
Sbjct: 175 KLENGHSNGNHNAV 188


>ref|XP_003527179.1| PREDICTED: signal recognition particle receptor subunit alpha-like
           [Glycine max]
          Length = 623

 Score = 48.5 bits (114), Expect(2) = 1e-09
 Identities = 22/27 (81%), Positives = 23/27 (85%)
 Frame = +3

Query: 411 NGSSEAGVFDVNKLQKLRTKGGKKTDT 491
           NGS   G FDV+KLQKLRTKGGKKTDT
Sbjct: 199 NGSPNVGAFDVHKLQKLRTKGGKKTDT 225



 Score = 40.8 bits (94), Expect(2) = 1e-09
 Identities = 21/38 (55%), Positives = 30/38 (78%), Gaps = 1/38 (2%)
 Frame = +2

Query: 575 SDPKLDFTDPVEERGEQNIE-VVAANPGESMMDEKKFL 685
           ++ KLDFTD   E GE+NI+ VVAA+ GESMMD+++ +
Sbjct: 252 TETKLDFTDHSGEDGERNIDFVVAADQGESMMDKEEIV 289