BLASTX nr result
ID: Coptis25_contig00035087
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00035087 (306 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003632962.1| PREDICTED: pentatricopeptide repeat-containi... 123 2e-26 emb|CAN64166.1| hypothetical protein VITISV_006333 [Vitis vinifera] 123 2e-26 ref|XP_002519054.1| pentatricopeptide repeat-containing protein,... 116 2e-24 ref|XP_002305141.1| predicted protein [Populus trichocarpa] gi|2... 115 4e-24 ref|XP_003593564.1| Pentatricopeptide repeat-containing protein ... 114 1e-23 >ref|XP_003632962.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like [Vitis vinifera] Length = 506 Score = 123 bits (308), Expect = 2e-26 Identities = 59/101 (58%), Positives = 73/101 (72%) Frame = +2 Query: 2 ISMDWNTHTTMAHIYIKAGLTDKAFAXXXXXXXXXXXXDGVGYNYLISLFASLGNKTEVA 181 I MDWNT+ A+ YIKAGL DKA DG+GYN+LISL+ASLGNK EV Sbjct: 242 IVMDWNTYAVAANFYIKAGLPDKAIEALKKSEERLDKRDGLGYNHLISLYASLGNKAEVL 301 Query: 182 RLWGLKKTACKKIMNMDYIAMLSSLVKLQELDDAEKLLKEW 304 RLW L+K+ACK+ +N DYI ML SLV+L EL++AEK+L+EW Sbjct: 302 RLWSLEKSACKRNINRDYITMLESLVRLGELEEAEKVLREW 342 >emb|CAN64166.1| hypothetical protein VITISV_006333 [Vitis vinifera] Length = 506 Score = 123 bits (308), Expect = 2e-26 Identities = 59/101 (58%), Positives = 73/101 (72%) Frame = +2 Query: 2 ISMDWNTHTTMAHIYIKAGLTDKAFAXXXXXXXXXXXXDGVGYNYLISLFASLGNKTEVA 181 I MDWNT+ A+ YIKAGL DKA DG+GYN+LISL+ASLGNK EV Sbjct: 242 IVMDWNTYAVAANFYIKAGLPDKAIEALKKSEERLDKRDGLGYNHLISLYASLGNKAEVL 301 Query: 182 RLWGLKKTACKKIMNMDYIAMLSSLVKLQELDDAEKLLKEW 304 RLW L+K+ACK+ +N DYI ML SLV+L EL++AEK+L+EW Sbjct: 302 RLWSLEKSACKRNINRDYITMLESLVRLGELEEAEKVLREW 342 >ref|XP_002519054.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223541717|gb|EEF43265.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 485 Score = 116 bits (290), Expect = 2e-24 Identities = 53/100 (53%), Positives = 73/100 (73%) Frame = +2 Query: 5 SMDWNTHTTMAHIYIKAGLTDKAFAXXXXXXXXXXXXDGVGYNYLISLFASLGNKTEVAR 184 +MDWNT+ +A+ YIKAGL DKA DG+GYN+LISL+A+LG K+EV R Sbjct: 218 AMDWNTYAVVANFYIKAGLADKAVDALRKSEEKLDKKDGIGYNHLISLYATLGIKSEVLR 277 Query: 185 LWGLKKTACKKIMNMDYIAMLSSLVKLQELDDAEKLLKEW 304 +W L+K+ CK+ +N D++ ML SLVKL +L++AEK+LKEW Sbjct: 278 IWDLQKSVCKRRINRDFVTMLESLVKLGDLEEAEKVLKEW 317 >ref|XP_002305141.1| predicted protein [Populus trichocarpa] gi|222848105|gb|EEE85652.1| predicted protein [Populus trichocarpa] Length = 492 Score = 115 bits (288), Expect = 4e-24 Identities = 55/101 (54%), Positives = 69/101 (68%) Frame = +2 Query: 2 ISMDWNTHTTMAHIYIKAGLTDKAFAXXXXXXXXXXXXDGVGYNYLISLFASLGNKTEVA 181 I MDWNT+ A+ YI LTDKA DG GYN+LISL+A LGNKTEV Sbjct: 232 IVMDWNTYAVAANFYIIGDLTDKAIDTLKKSEARLDKKDGTGYNHLISLYAKLGNKTEVL 291 Query: 182 RLWGLKKTACKKIMNMDYIAMLSSLVKLQELDDAEKLLKEW 304 RLW L+K+AC++ +N DYI M+ SL+KL E ++AEK+LKEW Sbjct: 292 RLWDLEKSACERHINKDYIIMMESLLKLSEFEEAEKMLKEW 332 >ref|XP_003593564.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355482612|gb|AES63815.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] Length = 495 Score = 114 bits (284), Expect = 1e-23 Identities = 53/101 (52%), Positives = 71/101 (70%) Frame = +2 Query: 2 ISMDWNTHTTMAHIYIKAGLTDKAFAXXXXXXXXXXXXDGVGYNYLISLFASLGNKTEVA 181 I MDWNT++ +A+ YIKA L+ +A DG GYN+LISL+A LG K EV Sbjct: 231 IVMDWNTYSVVANFYIKAELSSEAIDALRKCEKRLDDKDGEGYNHLISLYARLGKKNEVL 290 Query: 182 RLWGLKKTACKKIMNMDYIAMLSSLVKLQELDDAEKLLKEW 304 RLW ++K+ACK+ +N D+I ML SLVKL+E D+A+K+LKEW Sbjct: 291 RLWDMEKSACKRCLNRDFITMLESLVKLEEFDEADKILKEW 331