BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00035087
         (306 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632962.1| PREDICTED: pentatricopeptide repeat-containi...   123   2e-26
emb|CAN64166.1| hypothetical protein VITISV_006333 [Vitis vinifera]   123   2e-26
ref|XP_002519054.1| pentatricopeptide repeat-containing protein,...   116   2e-24
ref|XP_002305141.1| predicted protein [Populus trichocarpa] gi|2...   115   4e-24
ref|XP_003593564.1| Pentatricopeptide repeat-containing protein ...   114   1e-23

>ref|XP_003632962.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
           mitochondrial-like [Vitis vinifera]
          Length = 506

 Score =  123 bits (308), Expect = 2e-26
 Identities = 59/101 (58%), Positives = 73/101 (72%)
 Frame = +2

Query: 2   ISMDWNTHTTMAHIYIKAGLTDKAFAXXXXXXXXXXXXDGVGYNYLISLFASLGNKTEVA 181
           I MDWNT+   A+ YIKAGL DKA              DG+GYN+LISL+ASLGNK EV 
Sbjct: 242 IVMDWNTYAVAANFYIKAGLPDKAIEALKKSEERLDKRDGLGYNHLISLYASLGNKAEVL 301

Query: 182 RLWGLKKTACKKIMNMDYIAMLSSLVKLQELDDAEKLLKEW 304
           RLW L+K+ACK+ +N DYI ML SLV+L EL++AEK+L+EW
Sbjct: 302 RLWSLEKSACKRNINRDYITMLESLVRLGELEEAEKVLREW 342


>emb|CAN64166.1| hypothetical protein VITISV_006333 [Vitis vinifera]
          Length = 506

 Score =  123 bits (308), Expect = 2e-26
 Identities = 59/101 (58%), Positives = 73/101 (72%)
 Frame = +2

Query: 2   ISMDWNTHTTMAHIYIKAGLTDKAFAXXXXXXXXXXXXDGVGYNYLISLFASLGNKTEVA 181
           I MDWNT+   A+ YIKAGL DKA              DG+GYN+LISL+ASLGNK EV 
Sbjct: 242 IVMDWNTYAVAANFYIKAGLPDKAIEALKKSEERLDKRDGLGYNHLISLYASLGNKAEVL 301

Query: 182 RLWGLKKTACKKIMNMDYIAMLSSLVKLQELDDAEKLLKEW 304
           RLW L+K+ACK+ +N DYI ML SLV+L EL++AEK+L+EW
Sbjct: 302 RLWSLEKSACKRNINRDYITMLESLVRLGELEEAEKVLREW 342


>ref|XP_002519054.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223541717|gb|EEF43265.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 485

 Score =  116 bits (290), Expect = 2e-24
 Identities = 53/100 (53%), Positives = 73/100 (73%)
 Frame = +2

Query: 5   SMDWNTHTTMAHIYIKAGLTDKAFAXXXXXXXXXXXXDGVGYNYLISLFASLGNKTEVAR 184
           +MDWNT+  +A+ YIKAGL DKA              DG+GYN+LISL+A+LG K+EV R
Sbjct: 218 AMDWNTYAVVANFYIKAGLADKAVDALRKSEEKLDKKDGIGYNHLISLYATLGIKSEVLR 277

Query: 185 LWGLKKTACKKIMNMDYIAMLSSLVKLQELDDAEKLLKEW 304
           +W L+K+ CK+ +N D++ ML SLVKL +L++AEK+LKEW
Sbjct: 278 IWDLQKSVCKRRINRDFVTMLESLVKLGDLEEAEKVLKEW 317


>ref|XP_002305141.1| predicted protein [Populus trichocarpa] gi|222848105|gb|EEE85652.1|
           predicted protein [Populus trichocarpa]
          Length = 492

 Score =  115 bits (288), Expect = 4e-24
 Identities = 55/101 (54%), Positives = 69/101 (68%)
 Frame = +2

Query: 2   ISMDWNTHTTMAHIYIKAGLTDKAFAXXXXXXXXXXXXDGVGYNYLISLFASLGNKTEVA 181
           I MDWNT+   A+ YI   LTDKA              DG GYN+LISL+A LGNKTEV 
Sbjct: 232 IVMDWNTYAVAANFYIIGDLTDKAIDTLKKSEARLDKKDGTGYNHLISLYAKLGNKTEVL 291

Query: 182 RLWGLKKTACKKIMNMDYIAMLSSLVKLQELDDAEKLLKEW 304
           RLW L+K+AC++ +N DYI M+ SL+KL E ++AEK+LKEW
Sbjct: 292 RLWDLEKSACERHINKDYIIMMESLLKLSEFEEAEKMLKEW 332


>ref|XP_003593564.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355482612|gb|AES63815.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 495

 Score =  114 bits (284), Expect = 1e-23
 Identities = 53/101 (52%), Positives = 71/101 (70%)
 Frame = +2

Query: 2   ISMDWNTHTTMAHIYIKAGLTDKAFAXXXXXXXXXXXXDGVGYNYLISLFASLGNKTEVA 181
           I MDWNT++ +A+ YIKA L+ +A              DG GYN+LISL+A LG K EV 
Sbjct: 231 IVMDWNTYSVVANFYIKAELSSEAIDALRKCEKRLDDKDGEGYNHLISLYARLGKKNEVL 290

Query: 182 RLWGLKKTACKKIMNMDYIAMLSSLVKLQELDDAEKLLKEW 304
           RLW ++K+ACK+ +N D+I ML SLVKL+E D+A+K+LKEW
Sbjct: 291 RLWDMEKSACKRCLNRDFITMLESLVKLEEFDEADKILKEW 331