BLASTX nr result
ID: Coptis25_contig00035073
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00035073 (343 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsi... 105 4e-21 emb|CCH50966.1| T4.5 [Malus x robusta] 98 8e-19 emb|CAB43904.1| putative protein [Arabidopsis thaliana] gi|72697... 98 8e-19 emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana] 97 1e-18 gb|ACP30598.1| disease resistance protein [Brassica rapa subsp. ... 96 3e-18 >gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 1402 Score = 105 bits (262), Expect = 4e-21 Identities = 49/114 (42%), Positives = 68/114 (59%) Frame = +1 Query: 1 FRSLSNKASSSIWHSRLGHPVTPIFHKLLQTRCIDVQSQSKTFSFCNDCVVGKITKLPFT 180 F + AS +WH RLGHP + +L++T I + SK S C C +GK T+LPF Sbjct: 455 FSTRQQSASDEVWHRRLGHPHPQVLQQLVKTNSISINKTSK--SLCEACQLGKSTRLPFV 512 Query: 181 SSVCESTTPLQLLHMDLWGPSPVVSVGGNRFFATIVDDFSKYC*FFSLHLKSQF 342 SS S PL+ +H DLWGPSP+ SV G R++A +D +S++ + L LKS F Sbjct: 513 SSSFTSNRPLERVHCDLWGPSPITSVQGFRYYAVFIDHYSRFSWIYPLKLKSDF 566 >emb|CCH50966.1| T4.5 [Malus x robusta] Length = 1670 Score = 97.8 bits (242), Expect = 8e-19 Identities = 47/106 (44%), Positives = 59/106 (55%) Frame = +1 Query: 19 KASSSIWHSRLGHPVTPIFHKLLQTRCIDVQSQSKTFSFCNDCVVGKITKLPFTSSVCES 198 KA WH RLGHP H ++ + V S C C +GK +L F++ C S Sbjct: 726 KADIHTWHRRLGHPSGGTLHSVVHKNHLPVIGYVNNMSVCTACQLGKSYRLSFSTLPCTS 785 Query: 199 TTPLQLLHMDLWGPSPVVSVGGNRFFATIVDDFSKYC*FFSLHLKS 336 + PLQLLH D+WGPSP S G RF+ IVDDF+KY + LH KS Sbjct: 786 SRPLQLLHTDVWGPSPTSSCTGYRFYLIIVDDFTKYSWLYPLHFKS 831 >emb|CAB43904.1| putative protein [Arabidopsis thaliana] gi|7269745|emb|CAB81478.1| putative protein [Arabidopsis thaliana] Length = 1415 Score = 97.8 bits (242), Expect = 8e-19 Identities = 47/114 (41%), Positives = 68/114 (59%) Frame = +1 Query: 1 FRSLSNKASSSIWHSRLGHPVTPIFHKLLQTRCIDVQSQSKTFSFCNDCVVGKITKLPFT 180 + S S +WH RLGHP + +LL+ + I + S S C+ C +GKI KLPF Sbjct: 415 YSSRQQATSDEVWHMRLGHPNQDVLQQLLRNKAIVISKTSH--SLCDACQMGKICKLPFA 472 Query: 181 SSVCESTTPLQLLHMDLWGPSPVVSVGGNRFFATIVDDFSKYC*FFSLHLKSQF 342 SS S+ L+ +H DLWGP+PVVS G R++ +D++S++ F+ L LKS F Sbjct: 473 SSDFVSSRLLERVHCDLWGPAPVVSSQGFRYYVIFIDNYSRFTWFYPLRLKSDF 526 >emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana] Length = 1466 Score = 97.4 bits (241), Expect = 1e-18 Identities = 50/107 (46%), Positives = 67/107 (62%) Frame = +1 Query: 22 ASSSIWHSRLGHPVTPIFHKLLQTRCIDVQSQSKTFSFCNDCVVGKITKLPFTSSVCEST 201 AS WH RLGH + I +LL + I V ++S+T C C +GK T+L F SS + Sbjct: 453 ASMETWHHRLGHSNSKILQQLLTRKEIQV-NKSRTSPVCEPCQMGKSTRLQFFSSDFRAL 511 Query: 202 TPLQLLHMDLWGPSPVVSVGGNRFFATIVDDFSKYC*FFSLHLKSQF 342 PL +H DLWGPSPVVS G +++A VDDFS++ FF L +KS+F Sbjct: 512 KPLDRVHCDLWGPSPVVSNQGFKYYAVFVDDFSRFSWFFPLRMKSKF 558 >gb|ACP30598.1| disease resistance protein [Brassica rapa subsp. pekinensis] Length = 2301 Score = 95.9 bits (237), Expect = 3e-18 Identities = 42/107 (39%), Positives = 67/107 (62%) Frame = +1 Query: 22 ASSSIWHSRLGHPVTPIFHKLLQTRCIDVQSQSKTFSFCNDCVVGKITKLPFTSSVCEST 201 AS +WH RLGHP I +L + + + +SK S C C + K ++LPF++S +T Sbjct: 460 ASDEVWHQRLGHPNPHILQRLASIKSVFINKRSK--SLCVSCQMAKSSRLPFSASQFVAT 517 Query: 202 TPLQLLHMDLWGPSPVVSVGGNRFFATIVDDFSKYC*FFSLHLKSQF 342 PL+ +H D+WGPSPVVSV +++ ++D++S+YC + + KS F Sbjct: 518 RPLERIHCDVWGPSPVVSVQEFKYYVVLIDNYSRYCWMYPMKKKSDF 564