BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00035073
         (343 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsi...   105   4e-21
emb|CCH50966.1| T4.5 [Malus x robusta]                                 98   8e-19
emb|CAB43904.1| putative protein [Arabidopsis thaliana] gi|72697...    98   8e-19
emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]          97   1e-18
gb|ACP30598.1| disease resistance protein [Brassica rapa subsp. ...    96   3e-18

>gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1402

 Score =  105 bits (262), Expect = 4e-21
 Identities = 49/114 (42%), Positives = 68/114 (59%)
 Frame = +1

Query: 1   FRSLSNKASSSIWHSRLGHPVTPIFHKLLQTRCIDVQSQSKTFSFCNDCVVGKITKLPFT 180
           F +    AS  +WH RLGHP   +  +L++T  I +   SK  S C  C +GK T+LPF 
Sbjct: 455 FSTRQQSASDEVWHRRLGHPHPQVLQQLVKTNSISINKTSK--SLCEACQLGKSTRLPFV 512

Query: 181 SSVCESTTPLQLLHMDLWGPSPVVSVGGNRFFATIVDDFSKYC*FFSLHLKSQF 342
           SS   S  PL+ +H DLWGPSP+ SV G R++A  +D +S++   + L LKS F
Sbjct: 513 SSSFTSNRPLERVHCDLWGPSPITSVQGFRYYAVFIDHYSRFSWIYPLKLKSDF 566


>emb|CCH50966.1| T4.5 [Malus x robusta]
          Length = 1670

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 47/106 (44%), Positives = 59/106 (55%)
 Frame = +1

Query: 19   KASSSIWHSRLGHPVTPIFHKLLQTRCIDVQSQSKTFSFCNDCVVGKITKLPFTSSVCES 198
            KA    WH RLGHP     H ++    + V       S C  C +GK  +L F++  C S
Sbjct: 726  KADIHTWHRRLGHPSGGTLHSVVHKNHLPVIGYVNNMSVCTACQLGKSYRLSFSTLPCTS 785

Query: 199  TTPLQLLHMDLWGPSPVVSVGGNRFFATIVDDFSKYC*FFSLHLKS 336
            + PLQLLH D+WGPSP  S  G RF+  IVDDF+KY   + LH KS
Sbjct: 786  SRPLQLLHTDVWGPSPTSSCTGYRFYLIIVDDFTKYSWLYPLHFKS 831


>emb|CAB43904.1| putative protein [Arabidopsis thaliana] gi|7269745|emb|CAB81478.1|
           putative protein [Arabidopsis thaliana]
          Length = 1415

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 47/114 (41%), Positives = 68/114 (59%)
 Frame = +1

Query: 1   FRSLSNKASSSIWHSRLGHPVTPIFHKLLQTRCIDVQSQSKTFSFCNDCVVGKITKLPFT 180
           + S     S  +WH RLGHP   +  +LL+ + I +   S   S C+ C +GKI KLPF 
Sbjct: 415 YSSRQQATSDEVWHMRLGHPNQDVLQQLLRNKAIVISKTSH--SLCDACQMGKICKLPFA 472

Query: 181 SSVCESTTPLQLLHMDLWGPSPVVSVGGNRFFATIVDDFSKYC*FFSLHLKSQF 342
           SS   S+  L+ +H DLWGP+PVVS  G R++   +D++S++  F+ L LKS F
Sbjct: 473 SSDFVSSRLLERVHCDLWGPAPVVSSQGFRYYVIFIDNYSRFTWFYPLRLKSDF 526


>emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 50/107 (46%), Positives = 67/107 (62%)
 Frame = +1

Query: 22  ASSSIWHSRLGHPVTPIFHKLLQTRCIDVQSQSKTFSFCNDCVVGKITKLPFTSSVCEST 201
           AS   WH RLGH  + I  +LL  + I V ++S+T   C  C +GK T+L F SS   + 
Sbjct: 453 ASMETWHHRLGHSNSKILQQLLTRKEIQV-NKSRTSPVCEPCQMGKSTRLQFFSSDFRAL 511

Query: 202 TPLQLLHMDLWGPSPVVSVGGNRFFATIVDDFSKYC*FFSLHLKSQF 342
            PL  +H DLWGPSPVVS  G +++A  VDDFS++  FF L +KS+F
Sbjct: 512 KPLDRVHCDLWGPSPVVSNQGFKYYAVFVDDFSRFSWFFPLRMKSKF 558


>gb|ACP30598.1| disease resistance protein [Brassica rapa subsp. pekinensis]
          Length = 2301

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 42/107 (39%), Positives = 67/107 (62%)
 Frame = +1

Query: 22  ASSSIWHSRLGHPVTPIFHKLLQTRCIDVQSQSKTFSFCNDCVVGKITKLPFTSSVCEST 201
           AS  +WH RLGHP   I  +L   + + +  +SK  S C  C + K ++LPF++S   +T
Sbjct: 460 ASDEVWHQRLGHPNPHILQRLASIKSVFINKRSK--SLCVSCQMAKSSRLPFSASQFVAT 517

Query: 202 TPLQLLHMDLWGPSPVVSVGGNRFFATIVDDFSKYC*FFSLHLKSQF 342
            PL+ +H D+WGPSPVVSV   +++  ++D++S+YC  + +  KS F
Sbjct: 518 RPLERIHCDVWGPSPVVSVQEFKYYVVLIDNYSRYCWMYPMKKKSDF 564