BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00035021
         (340 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002520592.1| pentatricopeptide repeat-containing protein,...    74   2e-11
ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containi...    72   6e-11
ref|XP_002986825.1| hypothetical protein SELMODRAFT_22884 [Selag...    70   2e-10
ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containi...    70   2e-10
ref|XP_002322556.1| predicted protein [Populus trichocarpa] gi|2...    70   2e-10

>ref|XP_002520592.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540252|gb|EEF41825.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 525

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 39/103 (37%), Positives = 58/103 (56%)
 Frame = -2

Query: 309 NIITCTKKLMRFWRAGELNNAMKLFEQMPARNRITWNTMLTILVQSNNLNESRRLFLAMP 130
           NI++    L  F R G+L  A +LF+QMP++N ++WN M++  VQS  ++E+ +LF  MP
Sbjct: 194 NIVSWVTMLYGFARKGKLLEARRLFDQMPSKNVVSWNAMISAYVQSRQIDEAEKLFEEMP 253

Query: 129 KYNSTSYTLMITAFSRGGXXXXXXXXXXXXXVYYKNVILWTAM 1
           K +S S+T MI  + R G               YKN+   TAM
Sbjct: 254 KRDSVSWTTMINGYVRAGKLDEARKTLSKLP--YKNIAAQTAM 294



 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 32/105 (30%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
 Frame = -2

Query: 312 KNIITCTKKLMRFWRAGELNNAMKLFEQMPARNRITWNTMLTILVQSNNLNESRRLFLAM 133
           +N +T    +  + + G + +A  LF++MP RN ++WNTM+   + +N ++E+  LF+ M
Sbjct: 4   RNTVTYNSMISAYAKNGRVIDARVLFDKMPCRNLVSWNTMIAGYLHNNKVDEAYELFVKM 63

Query: 132 PKYNSTSYTLMITAFSRGG-XXXXXXXXXXXXXVYYKNVILWTAM 1
           P+ +  S+TLMIT +++ G               Y K+   W AM
Sbjct: 64  PRRDLFSWTLMITCYTQNGMLEKAKQLLNSLPCNYKKDAACWNAM 108



 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 25/80 (31%), Positives = 48/80 (60%)
 Frame = -2

Query: 327 HDLVHKNIITCTKKLMRFWRAGELNNAMKLFEQMPARNRITWNTMLTILVQSNNLNESRR 148
           H+++ +++++    +  F   G+L++A + F+++P  N ++W TML    +   L E+RR
Sbjct: 157 HEMLERDVVSWNLMVDGFVELGDLDSAWEFFKKVPEPNIVSWVTMLYGFARKGKLLEARR 216

Query: 147 LFLAMPKYNSTSYTLMITAF 88
           LF  MP  N  S+  MI+A+
Sbjct: 217 LFDQMPSKNVVSWNAMISAY 236


>ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Vitis vinifera]
          Length = 635

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 35/109 (32%), Positives = 63/109 (57%)
 Frame = -2

Query: 327 HDLVHKNIITCTKKLMRFWRAGELNNAMKLFEQMPARNRITWNTMLTILVQSNNLNESRR 148
           +++ +KN+++    +  + + G +++AM LFE+MP RN ++WNT++++L Q   + E+RR
Sbjct: 139 NEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARR 198

Query: 147 LFLAMPKYNSTSYTLMITAFSRGGXXXXXXXXXXXXXVYYKNVILWTAM 1
           LF  MP+ +  S+T MI   S+ G                +NV+ W AM
Sbjct: 199 LFDRMPERDVISWTAMIAGLSKNGRIDEARLLFDRMPE--RNVVSWNAM 245



 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 30/79 (37%), Positives = 50/79 (63%)
 Frame = -2

Query: 312 KNIITCTKKLMRFWRAGELNNAMKLFEQMPARNRITWNTMLTILVQSNNLNESRRLFLAM 133
           +N+++    +  + +   L+ A+ LFE+MP R+  +WNTM+T L+Q+ +L  +R+LF  M
Sbjct: 237 RNVVSWNAMITGYAQNLRLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEM 296

Query: 132 PKYNSTSYTLMITAFSRGG 76
           PK N  S+T MIT   + G
Sbjct: 297 PKKNVISWTTMITGCVQEG 315



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 30/104 (28%), Positives = 57/104 (54%)
 Frame = -2

Query: 312 KNIITCTKKLMRFWRAGELNNAMKLFEQMPARNRITWNTMLTILVQSNNLNESRRLFLAM 133
           KN++T T  +  + R+ ++++A KLF +MP +N ++WNTM+    Q+  ++ +  LF  M
Sbjct: 113 KNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKM 172

Query: 132 PKYNSTSYTLMITAFSRGGXXXXXXXXXXXXXVYYKNVILWTAM 1
           P+ N  S+  +++  ++ G                ++VI WTAM
Sbjct: 173 PERNVVSWNTVMSMLAQCGRIEEARRLFDRMPE--RDVISWTAM 214



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 33/104 (31%), Positives = 53/104 (50%)
 Frame = -2

Query: 312 KNIITCTKKLMRFWRAGELNNAMKLFEQMPARNRITWNTMLTILVQSNNLNESRRLFLAM 133
           +++I+ T  +    + G ++ A  LF++MP RN ++WN M+T   Q+  L+E+  LF  M
Sbjct: 206 RDVISWTAMIAGLSKNGRIDEARLLFDRMPERNVVSWNAMITGYAQNLRLDEALDLFERM 265

Query: 132 PKYNSTSYTLMITAFSRGGXXXXXXXXXXXXXVYYKNVILWTAM 1
           P+ +  S+  MIT   + G                KNVI WT M
Sbjct: 266 PERDLPSWNTMITGLIQNGDLRRARKLFNEMPK--KNVISWTTM 307


>ref|XP_002986825.1| hypothetical protein SELMODRAFT_22884 [Selaginella moellendorffii]
           gi|300145479|gb|EFJ12155.1| hypothetical protein
           SELMODRAFT_22884 [Selaginella moellendorffii]
          Length = 387

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 33/104 (31%), Positives = 61/104 (58%)
 Frame = -2

Query: 312 KNIITCTKKLMRFWRAGELNNAMKLFEQMPARNRITWNTMLTILVQSNNLNESRRLFLAM 133
           K++I+    +  + + G+  +A KLF+ MP +N ++W TM+T L +S  L E+R +F +M
Sbjct: 29  KSVISWNSMITAYAQHGQTADARKLFDSMPIKNVVSWTTMITGLGKSGGLREAREVFQSM 88

Query: 132 PKYNSTSYTLMITAFSRGGXXXXXXXXXXXXXVYYKNVILWTAM 1
           P+ N+ SYT+M+TA+++ G                ++++ W AM
Sbjct: 89  PRKNAASYTMMLTAYAQTGQINKARDIFSTMP--QRSIVAWNAM 130


>ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 32/85 (37%), Positives = 55/85 (64%)
 Frame = -2

Query: 330 QHDLVHKNIITCTKKLMRFWRAGELNNAMKLFEQMPARNRITWNTMLTILVQSNNLNESR 151
           QH + HKN +T    +  F + G +++A +LF+ MP RN ++WN+M+   + ++ + E+R
Sbjct: 39  QH-MTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEAR 97

Query: 150 RLFLAMPKYNSTSYTLMITAFSRGG 76
           +LF  MP  +  S+TLMIT ++R G
Sbjct: 98  QLFDKMPTRDLYSWTLMITCYTRNG 122



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 36/103 (34%), Positives = 55/103 (53%)
 Frame = -2

Query: 309 NIITCTKKLMRFWRAGELNNAMKLFEQMPARNRITWNTMLTILVQSNNLNESRRLFLAMP 130
           N ++    L  F R G++  A +LF+QMP RN + WN M+   VQ+ +++E+  LF+ MP
Sbjct: 232 NTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMP 291

Query: 129 KYNSTSYTLMITAFSRGGXXXXXXXXXXXXXVYYKNVILWTAM 1
           + NS S+T +I  + R G               Y+NV   TAM
Sbjct: 292 EKNSISWTTVINGYVRMGKLDEARQLLNQMP--YRNVAAQTAM 332



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 29/104 (27%), Positives = 51/104 (49%)
 Frame = -2

Query: 312 KNIITCTKKLMRFWRAGELNNAMKLFEQMPARNRITWNTMLTILVQSNNLNESRRLFLAM 133
           K++++    L  + R GE+   ++ FE+M  R+ ++WN M+   V+  +LN S   F  +
Sbjct: 169 KDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKI 228

Query: 132 PKYNSTSYTLMITAFSRGGXXXXXXXXXXXXXVYYKNVILWTAM 1
           P  N+ S+  M+  F+R G                +NV+ W AM
Sbjct: 229 PNPNTVSWVTMLCGFARFGKIAEARRLFDQMP--IRNVVAWNAM 270


>ref|XP_002322556.1| predicted protein [Populus trichocarpa] gi|222867186|gb|EEF04317.1|
           predicted protein [Populus trichocarpa]
          Length = 702

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
 Frame = -2

Query: 321 LVHKNIITCTKKLMRFWRAGELNNAMKLFEQMPARNRITWNTMLTILVQSNNLNESRRLF 142
           +  KN +T    +  + + G +N A  LF++MP RN ++WNTM++  + +   +E+ +LF
Sbjct: 1   MAEKNTVTYNSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLF 60

Query: 141 LAMPKYNSTSYTLMITAFSRGG-XXXXXXXXXXXXXVYYKNVILWTAM 1
           + MP+ +  S+TLMIT ++R G               Y K V  W AM
Sbjct: 61  VIMPRRDLFSWTLMITCYTRNGEVEKARELFDSLPCSYRKGVACWNAM 108



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 30/78 (38%), Positives = 49/78 (62%)
 Frame = -2

Query: 309 NIITCTKKLMRFWRAGELNNAMKLFEQMPARNRITWNTMLTILVQSNNLNESRRLFLAMP 130
           N+++    L  F R G +  + +LF+QMP+RN ++WN M++  VQ   ++E+ RLF  MP
Sbjct: 194 NVVSWVTMLSGFARNGNILESRRLFDQMPSRNIVSWNAMISAYVQRCEIDEASRLFEEMP 253

Query: 129 KYNSTSYTLMITAFSRGG 76
           + +S S+T MI  + R G
Sbjct: 254 ERDSVSWTTMINGYVRIG 271