BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00035006
         (289 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAC95126.1| gag-pol polyprotein [Populus deltoides]                89   3e-16

>emb|CAC95126.1| gag-pol polyprotein [Populus deltoides]
          Length = 1382

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 42/92 (45%), Positives = 66/92 (71%)
 Frame = +2

Query: 8   ITCTFLEPLDDKQPDYVKNKAKWERNNARIIMWINNSVHKTIQIELSKFDTAKECWDHLQ 187
           ++ T++ P + ++ D V     WE NNA+II WINN V  +I  +L+K++TAKE WDHLQ
Sbjct: 41  VSGTYVVPKNTEEGDTVSIDT-WEANNAKIITWINNYVEHSIGTQLAKYETAKEVWDHLQ 99

Query: 188 TIFSKLSYAKEFQLKIDIRATR*EDRSIQQFY 283
            +F++ ++AK++QL+ DIRA   ++ SIQ+FY
Sbjct: 100 RLFTQSNFAKQYQLENDIRALHQKNMSIQEFY 131