BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00035005
         (894 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containi...   388   e-106
ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containi...   374   e-101
ref|XP_002522236.1| pentatricopeptide repeat-containing protein,...   361   1e-97
ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containi...   350   3e-94
ref|XP_003629790.1| Pentatricopeptide repeat-containing protein ...   347   2e-93

>ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  388 bits (997), Expect = e-106
 Identities = 189/298 (63%), Positives = 233/298 (78%)
 Frame = +1

Query: 1    GYSSNGLSEKALQIFSMMRFSGFEVDVVTMVGVLPACAERGSLLLGKALHGHVIKAESFD 180
            GY SNGLSEK L +F  M   G   D+ TMV V+  C+  G LLLG+ALHG+ IKA SF 
Sbjct: 225  GYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKA-SFG 283

Query: 181  GEIIVNNTLVDMYTKRGDLNSAMRVFGKIDNRSVVSWTSMLAGYARLGEYDRAIELFWEM 360
             E+ +NN L+DMY+K G+LNSA++VF  +  RSVVSWTSM+AGYAR G  D ++ LF EM
Sbjct: 284  KELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEM 343

Query: 361  QAEGIKPDMFAITSALHACACNGSLENGKNIHDYITKNGLQLSLFVANSLMDIYAKCGNM 540
            + EGI PD+F IT+ LHACAC G LENGK++H+YI +N +Q  LFV+N+LMD+YAKCG+M
Sbjct: 344  EKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSM 403

Query: 541  EDARLIFDQMRVRDAISWNTIIGGYSKNSSSNEAFCIFLEMQKEFKPNGVTMACILPACA 720
             DA  +F +M+V+D +SWNT+IGGYSKNS  NEA  +F+EMQ   KPN +TMACILPACA
Sbjct: 404  GDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNSKPNSITMACILPACA 463

Query: 721  SLSALDRGREIHGYILRNGLPLDSYVYNALVDMYAKCGALLLARLLFDMMPAKDLVSW 894
            SL+AL+RG+EIHG+ILRNG  LD +V NALVDMY KCGAL LARLLFDM+P KDLVSW
Sbjct: 464  SLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSW 521



 Score =  184 bits (467), Expect = 2e-44
 Identities = 108/302 (35%), Positives = 164/302 (54%), Gaps = 4/302 (1%)
 Frame = +1

Query: 1    GYSSNGLSEKALQIFSMMRFSGFEVDVVTMVGVLPACAERGSLLLGKALHGHVIKAESFD 180
            GY+  GLS+ ++++F  M   G   D+ T+  +L ACA  G L  GK +H + IK     
Sbjct: 326  GYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNY-IKENKMQ 384

Query: 181  GEIIVNNTLVDMYTKRGDLNSAMRVFGKIDNRSVVSWTSMLAGYARLGEYDRAIELFWEM 360
             ++ V+N L+DMY K G +  A  VF ++  + +VSW +M+ GY++    + A+ LF EM
Sbjct: 385  SDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEM 444

Query: 361  QAEGIKPDMFAITSALHACACNGSLENGKNIHDYITKNGLQLSLFVANSLMDIYAKCGNM 540
            Q    KP+   +   L ACA   +LE G+ IH +I +NG  L   VAN+L+D+Y KCG +
Sbjct: 445  QYNS-KPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGAL 503

Query: 541  EDARLIFDQMRVRDAISWNTIIGGYSKNSSSNEAFCIFLEMQKE-FKPNGVTMACILPAC 717
              ARL+FD +  +D +SW  +I GY  +   +EA   F EM+    +P+ V+   IL AC
Sbjct: 504  GLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYAC 563

Query: 718  ASLSALDRGREIHGYILRNGLPLD--SYVYNALVDMYAKCGALLLARLLFDMMPAK-DLV 888
            +    LD G      ++RN   ++  S  Y  +VD+ A+ G L  A     MMP + D  
Sbjct: 564  SHSGLLDEGWGFFN-MMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDAT 622

Query: 889  SW 894
             W
Sbjct: 623  IW 624



 Score =  169 bits (427), Expect = 1e-39
 Identities = 99/325 (30%), Positives = 160/325 (49%), Gaps = 50/325 (15%)
 Frame = +1

Query: 70   EVDVVTMVGVLPACAERGSLLLGKALHGHVIKAESFDGEIIVNNTLVDMYTKRGDLNSAM 249
            ++++ T   VL  CA+  S+  G+ +H  +I++   + + ++ + LV MY   GDL    
Sbjct: 98   DLELRTYCSVLQLCADLKSIQDGRRIHS-IIQSNDVEVDGVLGSKLVFMYVTCGDLREGR 156

Query: 250  RVFGKIDN-------------------------------------------------RSV 282
            R+F K+ N                                                 R V
Sbjct: 157  RIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDV 216

Query: 283  VSWTSMLAGYARLGEYDRAIELFWEMQAEGIKPDMFAITSALHACACNGSLENGKNIHDY 462
            +SW SM++GY   G  ++ ++LF +M   GI  D+  + S +  C+  G L  G+ +H Y
Sbjct: 217  ISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGY 276

Query: 463  ITKNGLQLSLFVANSLMDIYAKCGNMEDARLIFDQMRVRDAISWNTIIGGYSKNSSSNEA 642
              K      L + N L+D+Y+K GN+  A  +F+ M  R  +SW ++I GY++   S+ +
Sbjct: 277  AIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMS 336

Query: 643  FCIFLEMQKE-FKPNGVTMACILPACASLSALDRGREIHGYILRNGLPLDSYVYNALVDM 819
              +F EM+KE   P+  T+  IL ACA    L+ G+++H YI  N +  D +V NAL+DM
Sbjct: 337  VRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDM 396

Query: 820  YAKCGALLLARLLFDMMPAKDLVSW 894
            YAKCG++  A  +F  M  KD+VSW
Sbjct: 397  YAKCGSMGDAHSVFSEMQVKDIVSW 421



 Score = 87.0 bits (214), Expect = 5e-15
 Identities = 61/257 (23%), Positives = 109/257 (42%), Gaps = 52/257 (20%)
 Frame = +1

Query: 280 VVSWTSMLAGYARLGEYDRAIELFWEMQAEGIKPDMFAIT--SALHACACNGSLENGKNI 453
           +  +   +  +  LG   RA+EL      +  KPD+   T  S L  CA   S+++G+ I
Sbjct: 68  ITDYNIEICRFCELGNLRRAMELI----NQSPKPDLELRTYCSVLQLCADLKSIQDGRRI 123

Query: 454 HDYITKNGLQLSLFVANSLMDIYAKCGNMEDARLIFDQMRVRDAISWNTIIGGYSKNSSS 633
           H  I  N +++   + + L+ +Y  CG++ + R IFD++       WN ++ GY+K  + 
Sbjct: 124 HSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNF 183

Query: 634 NEAFCIFLEMQK-----------------------------EFKPNGV------------ 690
            E+  +F  M++                              +  NG+            
Sbjct: 184 RESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQML 243

Query: 691 ---------TMACILPACASLSALDRGREIHGYILRNGLPLDSYVYNALVDMYAKCGALL 843
                    TM  ++  C++   L  GR +HGY ++     +  + N L+DMY+K G L 
Sbjct: 244 LLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLN 303

Query: 844 LARLLFDMMPAKDLVSW 894
            A  +F+ M  + +VSW
Sbjct: 304 SAIQVFETMGERSVVSW 320


>ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Cucumis sativus]
            gi|449500809|ref|XP_004161200.1| PREDICTED:
            pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  374 bits (959), Expect = e-101
 Identities = 178/298 (59%), Positives = 231/298 (77%)
 Frame = +1

Query: 1    GYSSNGLSEKALQIFSMMRFSGFEVDVVTMVGVLPACAERGSLLLGKALHGHVIKAESFD 180
            GY  NGL ++ ++IF  M   G ++D+ TMV V  ACA  G+LLLGK LH + IKA + D
Sbjct: 326  GYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLD 385

Query: 181  GEIIVNNTLVDMYTKRGDLNSAMRVFGKIDNRSVVSWTSMLAGYARLGEYDRAIELFWEM 360
             E+  NNTL+DMY+K GDLNSA+RVF ++D ++VVSWTSM+ GY R G  D AI+LF EM
Sbjct: 386  REVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEM 445

Query: 361  QAEGIKPDMFAITSALHACACNGSLENGKNIHDYITKNGLQLSLFVANSLMDIYAKCGNM 540
            ++ G+ PD++A+TS L+ACA NG+L++GK +HDYI +N L+ + FV+N+L D+YAKCG+M
Sbjct: 446  KSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSM 505

Query: 541  EDARLIFDQMRVRDAISWNTIIGGYSKNSSSNEAFCIFLEMQKEFKPNGVTMACILPACA 720
            +DA  +F  M+ +D ISWNT+IGGY+KNS  NEA  +F EMQ+E KP+G T+ACILPACA
Sbjct: 506  KDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRESKPDGTTVACILPACA 565

Query: 721  SLSALDRGREIHGYILRNGLPLDSYVYNALVDMYAKCGALLLARLLFDMMPAKDLVSW 894
            SL+ALD+GREIHGY LRNG   D YV NA+VDMY KCG L+LAR LFDM+P KDLVSW
Sbjct: 566  SLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSW 623



 Score =  175 bits (443), Expect = 1e-41
 Identities = 103/302 (34%), Positives = 160/302 (52%), Gaps = 4/302 (1%)
 Frame = +1

Query: 1    GYSSNGLSEKALQIFSMMRFSGFEVDVVTMVGVLPACAERGSLLLGKALHGHVIKAESFD 180
            GY   GLS+ A+++F  M+  G   DV  +  +L ACA  G+L  GK +H + I+  + +
Sbjct: 428  GYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDY-IRENNLE 486

Query: 181  GEIIVNNTLVDMYTKRGDLNSAMRVFGKIDNRSVVSWTSMLAGYARLGEYDRAIELFWEM 360
                V+N L DMY K G +  A  VF  +  + V+SW +M+ GY +    + A+ LF EM
Sbjct: 487  TNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEM 546

Query: 361  QAEGIKPDMFAITSALHACACNGSLENGKNIHDYITKNGLQLSLFVANSLMDIYAKCGNM 540
            Q E  KPD   +   L ACA   +L+ G+ IH Y  +NG     +V N+++D+Y KCG +
Sbjct: 547  QRES-KPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLL 605

Query: 541  EDARLIFDQMRVRDAISWNTIIGGYSKNSSSNEAFCIFLEMQKE-FKPNGVTMACILPAC 717
              AR +FD +  +D +SW  +I GY  +   +EA   F +M+    +P+ V+   IL AC
Sbjct: 606  VLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYAC 665

Query: 718  ASLSALDRGREIHGYILRNGLPLDSYV--YNALVDMYAKCGALLLARLLFDMMPAK-DLV 888
            +    LD G +I   I++    ++  +  Y  +VD+ A+ G L+ A      MP K D  
Sbjct: 666  SHSGLLDEGWKIFN-IMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDAT 724

Query: 889  SW 894
             W
Sbjct: 725  IW 726



 Score =  172 bits (436), Expect = 9e-41
 Identities = 100/299 (33%), Positives = 163/299 (54%), Gaps = 2/299 (0%)
 Frame = +1

Query: 4    YSSNGLSEKALQIFSMMRFSGFEVDVVTMVGVLPACAERGSLLLGKALHGHVIKAESFDG 183
            YS +G   +++ +F  M   G + +  T   +L   A    +  G+ +HG + K   F+ 
Sbjct: 226  YSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKL-GFNS 284

Query: 184  EIIVNNTLVDMYTKRGDLNSAMRVFGKIDNRSVVSWTSMLAGYARLGEYDRAIELFWEMQ 363
               V N+L+  Y     +  A ++F ++ +R V+SW SM++GY + G  DR IE+F +M 
Sbjct: 285  YNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKML 344

Query: 364  AEGIKPDMFAITSALHACACNGSLENGKNIHDYITKNG-LQLSLFVANSLMDIYAKCGNM 540
              G+  D+  + +   ACA  G+L  GK +H Y  K   L   +   N+L+D+Y+KCG++
Sbjct: 345  VFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDL 404

Query: 541  EDARLIFDQMRVRDAISWNTIIGGYSKNSSSNEAFCIFLEMQ-KEFKPNGVTMACILPAC 717
              A  +F++M  +  +SW ++I GY +   S+ A  +F EM+ +   P+   +  IL AC
Sbjct: 405  NSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNAC 464

Query: 718  ASLSALDRGREIHGYILRNGLPLDSYVYNALVDMYAKCGALLLARLLFDMMPAKDLVSW 894
            A    L  G+ +H YI  N L  +S+V NAL DMYAKCG++  A  +F  M  KD++SW
Sbjct: 465  AINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISW 523



 Score =  147 bits (371), Expect = 3e-33
 Identities = 94/292 (32%), Positives = 147/292 (50%), Gaps = 2/292 (0%)
 Frame = +1

Query: 25   EKALQIFSMMRFSGFEVDVVTMVGVLPACAERGSLLLGKALHGHVIKAESFDGEIIVNNT 204
            + A+++    + S F  D+     +L  CAER S+  G+ +   +I++     + I+   
Sbjct: 134  KNAMELLCSSQNSNF--DLGAYCSILQLCAERKSIRDGRRVRS-IIESSGVMIDGILGVK 190

Query: 205  LVDMYTKRGDLNSAMRVFGKIDNRSVVSWTSMLAGYARLGEYDRAIELFWEMQAEGIKPD 384
            LV MY K GDL     VF K+    +  W  M++ Y+  G Y  +I LF +M   GIKP+
Sbjct: 191  LVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPN 250

Query: 385  MFAITSALHACACNGSLENGKNIHDYITKNGLQLSLFVANSLMDIYAKCGNMEDARLIFD 564
             +  +S L   A    +E G+ +H  I K G      V NSL+  Y     +  A+ +FD
Sbjct: 251  SYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFD 310

Query: 565  QMRVRDAISWNTIIGGYSKNSSSNEAFCIFLEMQK-EFKPNGVTMACILPACASLSALDR 741
            ++  RD ISWN++I GY KN   +    IF++M       +  TM  +  ACA++  L  
Sbjct: 311  ELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLL 370

Query: 742  GREIHGYILRNG-LPLDSYVYNALVDMYAKCGALLLARLLFDMMPAKDLVSW 894
            G+ +H Y ++   L  +    N L+DMY+KCG L  A  +F+ M  K +VSW
Sbjct: 371  GKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSW 422


>ref|XP_002522236.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223538489|gb|EEF40094.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 640

 Score =  361 bits (927), Expect = 1e-97
 Identities = 177/298 (59%), Positives = 221/298 (74%)
 Frame = +1

Query: 1    GYSSNGLSEKALQIFSMMRFSGFEVDVVTMVGVLPACAERGSLLLGKALHGHVIKAESFD 180
            G  +N L EK +Q+F  M + G   D+VT+V VL ACA  G+  LG+ LH   IKA+  D
Sbjct: 275  GTVANDLPEKGIQVFKEMLYLGVSFDLVTLVNVLAACANSGNFPLGRVLHAFAIKAQ-LD 333

Query: 181  GEIIVNNTLVDMYTKRGDLNSAMRVFGKIDNRSVVSWTSMLAGYARLGEYDRAIELFWEM 360
              +   NTL+DMY+K GDLN+A+RVF K+  RSVVSWTS++AGYAR G     I LF EM
Sbjct: 334  QRMTFVNTLLDMYSKCGDLNNAIRVFQKMGERSVVSWTSLIAGYAREGLSGEGIRLFHEM 393

Query: 361  QAEGIKPDMFAITSALHACACNGSLENGKNIHDYITKNGLQLSLFVANSLMDIYAKCGNM 540
            + EG++PD F +T+ LHACAC+GSLE GK++HDY+ +N +Q    V NSLMD+YAKCG+M
Sbjct: 394  EREGVRPDNFTVTAVLHACACSGSLEIGKDVHDYVKENNMQKDRIVCNSLMDMYAKCGSM 453

Query: 541  EDARLIFDQMRVRDAISWNTIIGGYSKNSSSNEAFCIFLEMQKEFKPNGVTMACILPACA 720
            EDA L+F +M  +D +SWNT+IGGYSKN   NE   +F+ M +E KP+G TMACILPACA
Sbjct: 454  EDANLVFLEMPNKDIVSWNTMIGGYSKNGRPNETLHLFVAMVQELKPDGRTMACILPACA 513

Query: 721  SLSALDRGREIHGYILRNGLPLDSYVYNALVDMYAKCGALLLARLLFDMMPAKDLVSW 894
            SL+ALDRGREIHGYI RNG   D +V NAL+DMYAKCGAL LARL FDM+P KDL+SW
Sbjct: 514  SLAALDRGREIHGYIQRNGCFDDLHVANALIDMYAKCGALALARLFFDMIPVKDLISW 571



 Score =  198 bits (504), Expect = 1e-48
 Identities = 103/299 (34%), Positives = 175/299 (58%), Gaps = 1/299 (0%)
 Frame = +1

Query: 1    GYSSNGLSEKALQIFSMMRFSGFEVDVVTMVGVLPACAERGSLLLGKALHGHVIKAESFD 180
            GY+  G  E+++ +F  M   G +V+  T+  +L   A  GS+  G+ +HG+++K   F 
Sbjct: 174  GYAKIGAFEESVYLFRKMLDLGIQVNSHTVSCILKCFAALGSVKEGEWVHGYLLKL-GFG 232

Query: 181  GEIIVNNTLVDMYTKRGDLNSAMRVFGKIDNRSVVSWTSMLAGYARLGEYDRAIELFWEM 360
                V N+L+  Y K   + +A  VF ++ NR +VSW SM++G       ++ I++F EM
Sbjct: 233  SYNTVVNSLISFYFKTRKIEAAYEVFDELKNRDIVSWNSMISGTVANDLPEKGIQVFKEM 292

Query: 361  QAEGIKPDMFAITSALHACACNGSLENGKNIHDYITKNGLQLSLFVANSLMDIYAKCGNM 540
               G+  D+  + + L ACA +G+   G+ +H +  K  L   +   N+L+D+Y+KCG++
Sbjct: 293  LYLGVSFDLVTLVNVLAACANSGNFPLGRVLHAFAIKAQLDQRMTFVNTLLDMYSKCGDL 352

Query: 541  EDARLIFDQMRVRDAISWNTIIGGYSKNSSSNEAFCIFLEMQKE-FKPNGVTMACILPAC 717
             +A  +F +M  R  +SW ++I GY++   S E   +F EM++E  +P+  T+  +L AC
Sbjct: 353  NNAIRVFQKMGERSVVSWTSLIAGYAREGLSGEGIRLFHEMEREGVRPDNFTVTAVLHAC 412

Query: 718  ASLSALDRGREIHGYILRNGLPLDSYVYNALVDMYAKCGALLLARLLFDMMPAKDLVSW 894
            A   +L+ G+++H Y+  N +  D  V N+L+DMYAKCG++  A L+F  MP KD+VSW
Sbjct: 413  ACSGSLEIGKDVHDYVKENNMQKDRIVCNSLMDMYAKCGSMEDANLVFLEMPNKDIVSW 471



 Score =  155 bits (392), Expect = 1e-35
 Identities = 85/204 (41%), Positives = 122/204 (59%)
 Frame = +1

Query: 1   GYSSNGLSEKALQIFSMMRFSGFEVDVVTMVGVLPACAERGSLLLGKALHGHVIKAESFD 180
           GY+  GLS + +++F  M   G   D  T+  VL ACA  GSL +GK +H +V K  +  
Sbjct: 376 GYAREGLSGEGIRLFHEMEREGVRPDNFTVTAVLHACACSGSLEIGKDVHDYV-KENNMQ 434

Query: 181 GEIIVNNTLVDMYTKRGDLNSAMRVFGKIDNRSVVSWTSMLAGYARLGEYDRAIELFWEM 360
            + IV N+L+DMY K G +  A  VF ++ N+ +VSW +M+ GY++ G  +  + LF  M
Sbjct: 435 KDRIVCNSLMDMYAKCGSMEDANLVFLEMPNKDIVSWNTMIGGYSKNGRPNETLHLFVAM 494

Query: 361 QAEGIKPDMFAITSALHACACNGSLENGKNIHDYITKNGLQLSLFVANSLMDIYAKCGNM 540
             E +KPD   +   L ACA   +L+ G+ IH YI +NG    L VAN+L+D+YAKCG +
Sbjct: 495 VQE-LKPDGRTMACILPACASLAALDRGREIHGYIQRNGCFDDLHVANALIDMYAKCGAL 553

Query: 541 EDARLIFDQMRVRDAISWNTIIGG 612
             ARL FD + V+D ISW  +I G
Sbjct: 554 ALARLFFDMIPVKDLISWTVMIAG 577



 Score =  153 bits (387), Expect = 5e-35
 Identities = 96/295 (32%), Positives = 150/295 (50%), Gaps = 2/295 (0%)
 Frame = +1

Query: 16  GLSEKALQIFSMMRFSGFEVDVVTMVGVLPACAERGSLLLGKALHGHVIKAESF-DGEII 192
           G  + A+++  M   S   +D  T   +L  CAE  SL  GK +H  +  +  F DG  +
Sbjct: 80  GSLKNAIELLDMYPKSN--IDSNTYCSILQLCAELNSLQEGKKVHSFISSSGIFVDG--L 135

Query: 193 VNNTLVDMYTKRGDLNSAMRVFGKIDNRSVVSWTSMLAGYARLGEYDRAIELFWEMQAEG 372
           +   LV MY   GD+     +F KI N  V  W  ML+GYA++G ++ ++ LF +M   G
Sbjct: 136 LGTKLVFMYVNCGDIREGRVIFDKIANEKVFLWNLMLSGYAKIGAFEESVYLFRKMLDLG 195

Query: 373 IKPDMFAITSALHACACNGSLENGKNIHDYITKNGLQLSLFVANSLMDIYAKCGNMEDAR 552
           I+ +   ++  L   A  GS++ G+ +H Y+ K G      V NSL+  Y K   +E A 
Sbjct: 196 IQVNSHTVSCILKCFAALGSVKEGEWVHGYLLKLGFGSYNTVVNSLISFYFKTRKIEAAY 255

Query: 553 LIFDQMRVRDAISWNTIIGGYSKNSSSNEAFCIFLEM-QKEFKPNGVTMACILPACASLS 729
            +FD+++ RD +SWN++I G   N    +   +F EM       + VT+  +L ACA+  
Sbjct: 256 EVFDELKNRDIVSWNSMISGTVANDLPEKGIQVFKEMLYLGVSFDLVTLVNVLAACANSG 315

Query: 730 ALDRGREIHGYILRNGLPLDSYVYNALVDMYAKCGALLLARLLFDMMPAKDLVSW 894
               GR +H + ++  L       N L+DMY+KCG L  A  +F  M  + +VSW
Sbjct: 316 NFPLGRVLHAFAIKAQLDQRMTFVNTLLDMYSKCGDLNNAIRVFQKMGERSVVSW 370


>ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  350 bits (897), Expect = 3e-94
 Identities = 167/298 (56%), Positives = 225/298 (75%)
 Frame = +1

Query: 1    GYSSNGLSEKALQIFSMMRFSGFEVDVVTMVGVLPACAERGSLLLGKALHGHVIKAESFD 180
            G   NG S  AL+ F  M      VD+ T+V  + ACA  GSL LG+ALHG  +KA  F 
Sbjct: 628  GCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKA-CFS 686

Query: 181  GEIIVNNTLVDMYTKRGDLNSAMRVFGKIDNRSVVSWTSMLAGYARLGEYDRAIELFWEM 360
             E++ NNTL+DMY+K G+LN A++ F K+  ++VVSWTS++A Y R G YD AI LF+EM
Sbjct: 687  REVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEM 746

Query: 361  QAEGIKPDMFAITSALHACACNGSLENGKNIHDYITKNGLQLSLFVANSLMDIYAKCGNM 540
            +++G+ PD++++TS LHACAC  SL+ G+++H+YI KN + L L V+N+LMD+YAKCG+M
Sbjct: 747  ESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSM 806

Query: 541  EDARLIFDQMRVRDAISWNTIIGGYSKNSSSNEAFCIFLEMQKEFKPNGVTMACILPACA 720
            E+A L+F Q+ V+D +SWNT+IGGYSKNS  NEA  +F EMQKE +P+G+TMAC+LPAC 
Sbjct: 807  EEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKESRPDGITMACLLPACG 866

Query: 721  SLSALDRGREIHGYILRNGLPLDSYVYNALVDMYAKCGALLLARLLFDMMPAKDLVSW 894
            SL+AL+ GR IHG ILRNG   + +V NAL+DMY KCG+L+ ARLLFDM+P KDL++W
Sbjct: 867  SLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITW 924



 Score =  182 bits (463), Expect = 7e-44
 Identities = 103/298 (34%), Positives = 168/298 (56%), Gaps = 1/298 (0%)
 Frame = +1

Query: 4    YSSNGLSEKALQIFSMMRFSGFEVDVVTMVGVLPACAERGSLLLGKALHGHVIKAESFDG 183
            Y+  G   +++ +F  M+  G   +  T   +L   A  G +   K +HG V K   F  
Sbjct: 528  YAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKL-GFGS 586

Query: 184  EIIVNNTLVDMYTKRGDLNSAMRVFGKIDNRSVVSWTSMLAGYARLGEYDRAIELFWEMQ 363
               V N+L+  Y K G+++SA ++F ++ +R VVSW SM++G    G    A+E F +M 
Sbjct: 587  YNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQML 646

Query: 364  AEGIKPDMFAITSALHACACNGSLENGKNIHDYITKNGLQLSLFVANSLMDIYAKCGNME 543
               +  D+  + +++ ACA  GSL  G+ +H    K      +   N+L+D+Y+KCGN+ 
Sbjct: 647  ILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLN 706

Query: 544  DARLIFDQMRVRDAISWNTIIGGYSKNSSSNEAFCIFLEMQ-KEFKPNGVTMACILPACA 720
            DA   F++M  +  +SW ++I  Y +    ++A  +F EM+ K   P+  +M  +L ACA
Sbjct: 707  DAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACA 766

Query: 721  SLSALDRGREIHGYILRNGLPLDSYVYNALVDMYAKCGALLLARLLFDMMPAKDLVSW 894
              ++LD+GR++H YI +N + L   V NAL+DMYAKCG++  A L+F  +P KD+VSW
Sbjct: 767  CGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSW 824



 Score =  169 bits (427), Expect = 1e-39
 Identities = 106/300 (35%), Positives = 158/300 (52%), Gaps = 3/300 (1%)
 Frame = +1

Query: 4    YSSNGLSEKALQIFSMMRFSGFEVDVVTMVGVLPACAERGSLLLGKALHGHVIKAESFDG 183
            Y   GL + A+++F  M   G   DV +M  VL ACA   SL  G+ +H ++ K  +   
Sbjct: 730  YVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRK-NNMAL 788

Query: 184  EIIVNNTLVDMYTKRGDLNSAMRVFGKIDNRSVVSWTSMLAGYARLGEYDRAIELFWEMQ 363
             + V+N L+DMY K G +  A  VF +I  + +VSW +M+ GY++    + A++LF EMQ
Sbjct: 789  CLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQ 848

Query: 364  AEGIKPDMFAITSALHACACNGSLENGKNIHDYITKNGLQLSLFVANSLMDIYAKCGNME 543
             E  +PD   +   L AC    +LE G+ IH  I +NG    L VAN+L+D+Y KCG++ 
Sbjct: 849  KES-RPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLV 907

Query: 544  DARLIFDQMRVRDAISWNTIIGGYSKNSSSNEAFCIFLEMQ-KEFKPNGVTMACILPACA 720
             ARL+FD +  +D I+W  +I G   +   NEA   F +M+    KP+ +T   IL AC+
Sbjct: 908  HARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACS 967

Query: 721  SLSALDRG-REIHGYILRNGLPLDSYVYNALVDMYAKCGALLLARLLFDMMPAK-DLVSW 894
                L+ G    +  I    +      Y  +VD+ A+ G L  A  L + MP K D   W
Sbjct: 968  HSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIW 1027



 Score =  140 bits (354), Expect = 3e-31
 Identities = 98/293 (33%), Positives = 149/293 (50%), Gaps = 5/293 (1%)
 Frame = +1

Query: 31   ALQIFSMMRFSGFEVDVVTMVGVLPACAERGSLLLGKALHGHVIKAESFDGEIIVNNTLV 210
            A+++  M + S  E+D+     +L  CAE   L  GK +H  VI +     E ++   LV
Sbjct: 437  AVELLRMSQKS--ELDLNAYSSILQLCAEHKCLQEGKMVHS-VISSNGIPIEGVLGAKLV 493

Query: 211  DMYTKRGDLNSAMRVFGKI--DNRSVVSWTSMLAGYARLGEYDRAIELFWEMQAEGIKPD 384
             MY   G L    R+F  I  DN+ V  W  M++ YA++G+Y  +I LF +MQ  GI  +
Sbjct: 494  FMYVSCGALREGRRIFDHILSDNK-VFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGN 552

Query: 385  MFAITSALHACACNGSLENGKNIHDYITKNGLQLSLFVANSLMDIYAKCGNMEDARLIFD 564
             +  +  L   A  G +   K IH  + K G      V NSL+  Y K G ++ A  +FD
Sbjct: 553  SYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFD 612

Query: 565  QMRVRDAISWNTIIGGYSKNSSSNEAFCIFLEMQKEFKPNGVTMACI---LPACASLSAL 735
            ++  RD +SWN++I G   N  S+ A   F++M       GV +A +   + ACA++ +L
Sbjct: 613  ELGDRDVVSWNSMISGCVMNGFSHSALEFFVQML--ILRVGVDLATLVNSVAACANVGSL 670

Query: 736  DRGREIHGYILRNGLPLDSYVYNALVDMYAKCGALLLARLLFDMMPAKDLVSW 894
              GR +HG  ++     +    N L+DMY+KCG L  A   F+ M  K +VSW
Sbjct: 671  SLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSW 723


>ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355523812|gb|AET04266.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  347 bits (891), Expect = 2e-93
 Identities = 165/294 (56%), Positives = 227/294 (77%)
 Frame = +1

Query: 13   NGLSEKALQIFSMMRFSGFEVDVVTMVGVLPACAERGSLLLGKALHGHVIKAESFDGEII 192
            NG S   L+IF  M   G EVD+ T+V VL ACA  G+L LG+ALHG  +KA  F  E++
Sbjct: 274  NGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKA-CFSEEVV 332

Query: 193  VNNTLVDMYTKRGDLNSAMRVFGKIDNRSVVSWTSMLAGYARLGEYDRAIELFWEMQAEG 372
             +NTL+DMY+K G+LN A  VF K+ + ++VSWTS++A Y R G Y  AI LF EMQ++G
Sbjct: 333  FSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKG 392

Query: 373  IKPDMFAITSALHACACNGSLENGKNIHDYITKNGLQLSLFVANSLMDIYAKCGNMEDAR 552
            ++PD++ +TS +HACAC+ SL+ G+++H Y+ KNG+  +L V N+L+++YAKCG++E+AR
Sbjct: 393  VRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEAR 452

Query: 553  LIFDQMRVRDAISWNTIIGGYSKNSSSNEAFCIFLEMQKEFKPNGVTMACILPACASLSA 732
            L+F ++ V+D +SWNT+IGGYS+N   NEA  +FL+MQK+FKP+ +TMAC+LPACA L+A
Sbjct: 453  LVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQFKPDDITMACVLPACAGLAA 512

Query: 733  LDRGREIHGYILRNGLPLDSYVYNALVDMYAKCGALLLARLLFDMMPAKDLVSW 894
            LD+GREIHG+ILR G   D +V  ALVDMYAKCG L+LA+LLFDM+P KDL+SW
Sbjct: 513  LDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISW 566



 Score =  188 bits (478), Expect = 1e-45
 Identities = 105/298 (35%), Positives = 169/298 (56%), Gaps = 1/298 (0%)
 Frame = +1

Query: 4    YSSNGLSEKALQIFSMMRFSGFEVDVVTMVGVLPACAERGSLLLGKALHGHVIKAESFDG 183
            Y+  G   +++ +F  M+  G   +  T   VL   A  G +   K +HG+V+K   F  
Sbjct: 170  YAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKL-GFGS 228

Query: 184  EIIVNNTLVDMYTKRGDLNSAMRVFGKIDNRSVVSWTSMLAGYARLGEYDRAIELFWEMQ 363
               V N+L+  Y K G + SA  +F ++    VVSW SM+ G    G     +E+F +M 
Sbjct: 229  NTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQML 288

Query: 364  AEGIKPDMFAITSALHACACNGSLENGKNIHDYITKNGLQLSLFVANSLMDIYAKCGNME 543
              G++ D+  + S L ACA  G+L  G+ +H +  K      +  +N+L+D+Y+KCGN+ 
Sbjct: 289  ILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLN 348

Query: 544  DARLIFDQMRVRDAISWNTIIGGYSKNSSSNEAFCIFLEMQ-KEFKPNGVTMACILPACA 720
             A  +F +M     +SW +II  Y +    ++A  +F EMQ K  +P+  T+  I+ ACA
Sbjct: 349  GATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACA 408

Query: 721  SLSALDRGREIHGYILRNGLPLDSYVYNALVDMYAKCGALLLARLLFDMMPAKDLVSW 894
              S+LD+GR++H Y+++NG+  +  V NAL++MYAKCG++  ARL+F  +P KD+VSW
Sbjct: 409  CSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSW 466



 Score =  167 bits (422), Expect = 4e-39
 Identities = 104/301 (34%), Positives = 160/301 (53%), Gaps = 4/301 (1%)
 Frame = +1

Query: 4    YSSNGLSEKALQIFSMMRFSGFEVDVVTMVGVLPACAERGSLLLGKALHGHVIKAESFDG 183
            Y   GL   A+ +F  M+  G   D+ T+  ++ ACA   SL  G+ +H +VIK      
Sbjct: 372  YVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIK-NGMGS 430

Query: 184  EIIVNNTLVDMYTKRGDLNSAMRVFGKIDNRSVVSWTSMLAGYARLGEYDRAIELFWEMQ 363
             + V N L++MY K G +  A  VF KI  + +VSW +M+ GY++    + A+ELF +MQ
Sbjct: 431  NLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQ 490

Query: 364  AEGIKPDMFAITSALHACACNGSLENGKNIHDYITKNGLQLSLFVANSLMDIYAKCGNME 543
             +  KPD   +   L ACA   +L+ G+ IH +I + G    L VA +L+D+YAKCG + 
Sbjct: 491  KQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLV 549

Query: 544  DARLIFDQMRVRDAISWNTIIGGYSKNSSSNEAFCIFLEMQ-KEFKPNGVTMACILPACA 720
             A+L+FD +  +D ISW  +I GY  +   NEA   F EM+    +P+  + + IL AC+
Sbjct: 550  LAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACS 609

Query: 721  SLSALDRGREIHGYILRNGLPLDSYV--YNALVDMYAKCGALLLARLLFDMMPAK-DLVS 891
                L+ G +     +RN   ++  +  Y  +VD+ A+ G L  A    + MP K D   
Sbjct: 610  HSGLLNEGWKFFN-SMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTI 668

Query: 892  W 894
            W
Sbjct: 669  W 669



 Score =  151 bits (381), Expect = 2e-34
 Identities = 90/283 (31%), Positives = 145/283 (51%), Gaps = 1/283 (0%)
 Frame = +1

Query: 49  MMRFSGFEVDVVTMVGVLPACAERGSLLLGKALHGHVIKAESFDGEIIVNNTLVDMYTKR 228
           + +   +E+ + +   VL  CAE+ SL  GK +H  VI +     +  +   LV MY   
Sbjct: 84  LTKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHS-VIISNGISVDEALGAKLVFMYVNC 142

Query: 229 GDLNSAMRVFGKIDNRSVVSWTSMLAGYARLGEYDRAIELFWEMQAEGIKPDMFAITSAL 408
           GDL    ++F KI N  V  W  +++ YA++G +  ++ LF +MQ  G+  + +  T  L
Sbjct: 143 GDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVL 202

Query: 409 HACACNGSLENGKNIHDYITKNGLQLSLFVANSLMDIYAKCGNMEDARLIFDQMRVRDAI 588
              A  G ++  K +H Y+ K G   +  V NSL+  Y K G +E A  +FD++   D +
Sbjct: 203 KCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVV 262

Query: 589 SWNTIIGGYSKNSSSNEAFCIFLEMQ-KEFKPNGVTMACILPACASLSALDRGREIHGYI 765
           SWN++I G   N  S     IF++M     + +  T+  +L ACA++  L  GR +HG+ 
Sbjct: 263 SWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFG 322

Query: 766 LRNGLPLDSYVYNALVDMYAKCGALLLARLLFDMMPAKDLVSW 894
           ++     +    N L+DMY+KCG L  A  +F  M    +VSW
Sbjct: 323 VKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSW 365