BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00034958
         (376 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276914.1| PREDICTED: U4/U6 small nuclear ribonucleopro...   153   2e-35
emb|CAN64891.1| hypothetical protein VITISV_016440 [Vitis vinifera]   153   2e-35
ref|XP_002881779.1| hypothetical protein ARALYDRAFT_483227 [Arab...   142   3e-32
ref|XP_003535893.1| PREDICTED: U4/U6 small nuclear ribonucleopro...   140   1e-31
ref|XP_004162536.1| PREDICTED: U4/U6 small nuclear ribonucleopro...   140   1e-31

>ref|XP_002276914.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like
           protein-like [Vitis vinifera]
          Length = 577

 Score =  153 bits (386), Expect = 2e-35
 Identities = 93/181 (51%), Positives = 105/181 (58%), Gaps = 58/181 (32%)
 Frame = +3

Query: 6   LMKRRAHALAVPTNDLG------RLGEPITLFGEKEMDR-------------------LL 110
           LMKRRA ALAVPTND+       RLGEPITLFGE+EM+R                   L+
Sbjct: 134 LMKRRASALAVPTNDMAVRTRLRRLGEPITLFGEREMERRDRLRMIMAKLDAEGQLEKLM 193

Query: 111 KAQST------------------YPFYTEGSKELLEARIHIAEFSI-------LRLKRTR 215
           KA                     YPFYTEGSK LLEAR+ IA++SI        R +R R
Sbjct: 194 KAHEEEEAAAPVAMEEVEEETLQYPFYTEGSKSLLEARVEIAKYSIKRAASRLYRARRKR 253

Query: 216 DDPDEDLD--------NRGGLVLDSSEIGDDCPLTGCSFSHDGSLLATCAISGLTKLWSM 371
           DDPDEDLD          G LVLD SEIGDD PL+GCSFSHDG LLA CA+SG+ K+WSM
Sbjct: 254 DDPDEDLDAEMDWVLKEAGSLVLDCSEIGDDRPLSGCSFSHDGKLLAACALSGVAKIWSM 313

Query: 372 P 374
           P
Sbjct: 314 P 314


>emb|CAN64891.1| hypothetical protein VITISV_016440 [Vitis vinifera]
          Length = 1088

 Score =  153 bits (386), Expect = 2e-35
 Identities = 93/181 (51%), Positives = 105/181 (58%), Gaps = 58/181 (32%)
 Frame = +3

Query: 6    LMKRRAHALAVPTNDLG------RLGEPITLFGEKEMDR-------------------LL 110
            LMKRRA ALAVPTND+       RLGEPITLFGE+EM+R                   L+
Sbjct: 645  LMKRRASALAVPTNDMAVRTRLRRLGEPITLFGEREMERRDRLRMIMAKLDAEGQLEKLM 704

Query: 111  KAQST------------------YPFYTEGSKELLEARIHIAEFSI-------LRLKRTR 215
            KA                     YPFYTEGSK LLEAR+ IA++SI        R +R R
Sbjct: 705  KAHEEEEAAAPVAMEEVEEETLQYPFYTEGSKSLLEARVEIAKYSIKRAASRLYRARRKR 764

Query: 216  DDPDEDLD--------NRGGLVLDSSEIGDDCPLTGCSFSHDGSLLATCAISGLTKLWSM 371
            DDPDEDLD          G LVLD SEIGDD PL+GCSFSHDG LLA CA+SG+ K+WSM
Sbjct: 765  DDPDEDLDAEMDWVLKEAGSLVLDCSEIGDDRPLSGCSFSHDGKLLAACALSGVAKIWSM 824

Query: 372  P 374
            P
Sbjct: 825  P 825


>ref|XP_002881779.1| hypothetical protein ARALYDRAFT_483227 [Arabidopsis lyrata subsp.
           lyrata] gi|297327618|gb|EFH58038.1| hypothetical protein
           ARALYDRAFT_483227 [Arabidopsis lyrata subsp. lyrata]
          Length = 552

 Score =  142 bits (358), Expect = 3e-32
 Identities = 89/178 (50%), Positives = 103/178 (57%), Gaps = 54/178 (30%)
 Frame = +3

Query: 3   LLMKRRAHALAVPTND------LGRLGEPITLFGEKEM-------------------DRL 107
           LL+KRRA A+AVPTND      L RLG+PITLFGE+EM                   D+L
Sbjct: 104 LLVKRRAAAMAVPTNDKAVRDRLRRLGQPITLFGEQEMERRARLTQLLARLDMDGQLDKL 163

Query: 108 LKAQST--------------YPFYTEGSKELLEARIHIAEFS-------ILRLKRTRDDP 224
           L AQ                YPF+TEG KEL EARI IA+FS       I R KR RDDP
Sbjct: 164 LIAQEEDVAPKEEVDDEVLEYPFFTEGPKELREARIEIAKFSVKRAAVRIQRAKRRRDDP 223

Query: 225 DEDLD--------NRGGLVLDSSEIGDDCPLTGCSFSHDGSLLATCAISGLTKLWSMP 374
           DED+D        +   +VLD S  GDD PLTGCSFS DG +LATC++SG+TKLW MP
Sbjct: 224 DEDMDAETKWALKHAKNMVLDCSNFGDDRPLTGCSFSRDGKILATCSLSGVTKLWEMP 281


>ref|XP_003535893.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like
           protein-like [Glycine max]
          Length = 570

 Score =  140 bits (353), Expect = 1e-31
 Identities = 87/181 (48%), Positives = 104/181 (57%), Gaps = 57/181 (31%)
 Frame = +3

Query: 3   LLMKRRAHALAVPTNDLG------RLGEPITLFGEKEMDR-------------------L 107
           L+MKRRA ALAVPTND+        LGEPITLFGE+EM+R                   L
Sbjct: 129 LMMKRRAAALAVPTNDMAVRARLRHLGEPITLFGEREMERRDRLRMIMAKLDAEGQLEKL 188

Query: 108 LKAQST-----------------YPFYTEGSKELLEARIHIAEFS-------ILRLKRTR 215
           +KA                    YPFYTEGSK LL+ARI+IA++S       I R +R R
Sbjct: 189 MKAHEEEEAAASASIDEAEEELQYPFYTEGSKALLDARIYIAKYSLTRAALRIQRAQRRR 248

Query: 216 DDPDEDLD--------NRGGLVLDSSEIGDDCPLTGCSFSHDGSLLATCAISGLTKLWSM 371
           DDPDED+D          G L L+ SEIGDD PL+GCSFS DG  LATC+++G +KLWSM
Sbjct: 249 DDPDEDMDAEMNWALKQAGNLSLEFSEIGDDRPLSGCSFSRDGKWLATCSLTGASKLWSM 308

Query: 372 P 374
           P
Sbjct: 309 P 309


>ref|XP_004162536.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like
           protein-like [Cucumis sativus]
          Length = 568

 Score =  140 bits (352), Expect = 1e-31
 Identities = 88/181 (48%), Positives = 102/181 (56%), Gaps = 58/181 (32%)
 Frame = +3

Query: 6   LMKRRAHALAVPTNDLG------RLGEPITLFGEKEMDRLLKAQST-------------- 125
           LMKRRA ALAVPTND+       RLGEPITLFGE+EM+R  + +S               
Sbjct: 126 LMKRRASALAVPTNDMAVRARLRRLGEPITLFGEREMERRDRLRSIMARLDAEGQLEKLM 185

Query: 126 -----------------------YPFYTEGSKELLEARIHIAEFSILRL-------KRTR 215
                                  YPFYTEGSK LL+ARI IA++SILR        KR R
Sbjct: 186 KVHEEEEAAATGGTEEAEEEVLQYPFYTEGSKALLDARIDIAKYSILRASSRLERAKRKR 245

Query: 216 DDPDEDLD--------NRGGLVLDSSEIGDDCPLTGCSFSHDGSLLATCAISGLTKLWSM 371
           DDPDED++            LVLD SEIGDD PL+GCSFS DG  LAT ++SG+ KLWSM
Sbjct: 246 DDPDEDVEAEMDWALRQAESLVLDCSEIGDDRPLSGCSFSSDGKFLATSSLSGVAKLWSM 305

Query: 372 P 374
           P
Sbjct: 306 P 306