BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00034932
         (867 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...   155   5e-36
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   153   6e-35
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...   146   7e-33
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   145   9e-33
gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CA...   142   1e-31

>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score =  155 bits (393), Expect(2) = 5e-36
 Identities = 92/264 (34%), Positives = 143/264 (54%), Gaps = 2/264 (0%)
 Frame = -2

Query: 866  ALYARHIHPHSKCKSMGISHLFFANDALLFCKGDMAYILAIKDILFQFSLVT*LNINTTK 687
            A   + I  H +C++M ++HL FA+D ++F  G    I     I  +F+ ++ L I+  K
Sbjct: 828  AAVEKKISYHPRCRNMNLTHLCFADDIMVFSDGTSKSIQGTLAIFEKFAAMSWLKISLEK 887

Query: 686  TSLLFGSMSHEVGLDLANGMGISFICPHLTYLGLPLTSSRLGIRDCLLLVERLTSRISNW 507
            +++    +S      +            + YLGLPL + R+   D L LVE++ +RI++W
Sbjct: 888  STIFMAGISPNAKTSILQQFPFELGTLPVKYLGLPLLTKRMTQSDYLPLVEKIRARITSW 947

Query: 506  KNKTLSRAGKLELI*SVLSSFQVYWSKTFVLPKKVLDNVSKIYNRFLWSGLNM-TRKMHH 330
             N+ LS AG+L+LI SVLSS   +W   F LPK  L  + K+++ FLWSG ++ T+K   
Sbjct: 948  TNRFLSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQEIEKMFSAFLWSGPDLNTKKAKI 1007

Query: 329  ASHEVLRFAKDQGSLGMKDARTWNRAPYCGLVFRIAAIENSL*AKWTWSQQIKKHFFWTM 150
            A  EV +  K++G LG+K  +  N      L++RI +  +SL  KW     I+K  FW++
Sbjct: 1008 AWSEVCKL-KEEGGLGLKPLKEANEVSLLKLIWRILSARDSLWVKWVNKHLIRKETFWSV 1066

Query: 149  KIPTSC-FWVWRGILKYRTTTRKF 81
            K  T    W+WR ILK R   R F
Sbjct: 1067 KENTGLGSWLWRKILKQRDKARLF 1090



 Score = 21.9 bits (45), Expect(2) = 5e-36
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -1

Query: 45   FWHEPWC 25
            FWH+ WC
Sbjct: 1103 FWHDHWC 1109


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  153 bits (386), Expect = 6e-35
 Identities = 89/261 (34%), Positives = 139/261 (53%), Gaps = 1/261 (0%)
 Frame = -2

Query: 866  ALYARHIHPHSKCKSMGISHLFFANDALLFCKGDMAYILAIKDILFQFSLVT*LNINTTK 687
            A  ARH   H KCK+MG++HL FA+D ++   G +  I  I  +  +F+  + L I+  K
Sbjct: 681  AAAARHFGYHPKCKTMGLTHLSFADDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISLEK 740

Query: 686  TSLLFGSMSHEVGLDLANGMGISFICPHLTYLGLPLTSSRLGIRDCLLLVERLTSRISNW 507
            +++    +S     ++A+    S     + YLGLPL + RL   DCL L+E++  RI +W
Sbjct: 741  STVYLAGLSATARNEVADRFPFSSGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSW 800

Query: 506  KNKTLSRAGKLELI*SVLSSFQVYWSKTFVLPKKVLDNVSKIYNRFLWSGLNMTRKMHHA 327
             ++ LS AG+L LI SVL S   +W   F LP+K +  + K+ + FLWSG  M       
Sbjct: 801  TSRFLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIRELEKMCSAFLWSGTEMNSNKAKI 860

Query: 326  SHEVLRFAKDQGSLGMKDARTWNRAPYCGLVFRIAAIENSL*AKWTWSQQIKKHFFWTMK 147
            S  ++   KD+G LG++  +  N      LV++I +  NSL  KW     ++   FW +K
Sbjct: 861  SWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEVK 920

Query: 146  IPTS-CFWVWRGILKYRTTTR 87
               S   W+W+ +LKYR   +
Sbjct: 921  QTVSQGSWIWKKLLKYREVAK 941


>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score =  146 bits (368), Expect = 7e-33
 Identities = 83/247 (33%), Positives = 130/247 (52%)
 Frame = -2

Query: 839  HSKCKSMGISHLFFANDALLFCKGDMAYILAIKDILFQFSLVT*LNINTTKTSLLFGSMS 660
            H KC+ + I+HL FA+D L+FC+ D + +  +     +FS  + L  +  K+++ F  + 
Sbjct: 675  HPKCERLNITHLMFADDLLMFCRADKSSLDHMNVAFQKFSHASGLAASHEKSNIYFCGVD 734

Query: 659  HEVGLDLANGMGISFICPHLTYLGLPLTSSRLGIRDCLLLVERLTSRISNWKNKTLSRAG 480
             E   +LA+ + +        YLG+PLTS +L    C  LVE +T+R   W  K LS AG
Sbjct: 735  DETARELADYVHMQLGELPFRYLGVPLTSKKLTYAQCKPLVEMITNRAQTWMAKLLSYAG 794

Query: 479  KLELI*SVLSSFQVYWSKTFVLPKKVLDNVSKIYNRFLWSGLNMTRKMHHASHEVLRFAK 300
            +L+LI S+LSS Q YW+  F L KKV+  V K+  +FLW+G     K    +   ++  K
Sbjct: 795  RLQLIKSILSSMQNYWAHIFPLSKKVIQAVEKVCRKFLWTGKTEETKKAPVAWATIQRPK 854

Query: 299  DQGSLGMKDARTWNRAPYCGLVFRIAAIENSL*AKWTWSQQIKKHFFWTMKIPTSCFWVW 120
             +G   + + + WNRA    L++ I    + L  +W  S  IK+    T+ I     W+ 
Sbjct: 855  SRGGWNVINMKYWNRAAMLKLLWAIEFKRDKLWVRWIHSYYIKRQDILTVNISNQTTWIL 914

Query: 119  RGILKYR 99
            R I+K R
Sbjct: 915  RKIVKAR 921


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1216

 Score =  145 bits (367), Expect = 9e-33
 Identities = 84/271 (30%), Positives = 141/271 (52%), Gaps = 1/271 (0%)
 Frame = -2

Query: 857  ARHIHPHSKCKSMGISHLFFANDALLFCKGDMAYILAIKDILFQFSLVT*LNINTTKTSL 678
            AR    H +CK++G++HL FA+D ++   G +  +  I  +L QF+    L I   KT+L
Sbjct: 405  AREFGYHPRCKTLGLTHLCFADDLMILTDGKIRSVDGIVKVLNQFAAKLGLKICMEKTTL 464

Query: 677  LFGSMSHEVGLDLANGMGISFICPHLTYLGLPLTSSRLGIRDCLLLVERLTSRISNWKNK 498
                +S      +++          + YLGLPL + RL   D   L++++  RI  W ++
Sbjct: 465  YLAGVSDHSRQLMSSRYSFGVGKLPVRYLGLPLVTKRLTTSDYSPLIDQIRRRIGMWTSR 524

Query: 497  TLSRAGKLELI*SVLSSFQVYWSKTFVLPKKVLDNVSKIYNRFLWSGLNMTRKMHHASHE 318
             LS AG+L LI SVL S   +W   F LP++ ++ +++I +  LWSG  +  K    S +
Sbjct: 525  YLSFAGRLSLINSVLWSITNFWMNAFRLPRECINEINRISSALLWSGPELNPKKAKVSWD 584

Query: 317  VLRFAKDQGSLGMKDARTWNRAPYCGLVFRIAAIENSL*AKWTWSQQIKKHFFWTMKI-P 141
             +   K +G LG++  R  N+     L++R+ + ++SL  KWT    +KK  FW++    
Sbjct: 585  EICKPKKEGGLGLQSLREANKVSSLKLIWRLLSCQDSLWVKWTRMNLLKKESFWSIGTHS 644

Query: 140  TSCFWVWRGILKYRTTTRKFICYIITDRYNT 48
            T   W+WR +LK+R   + F    + +  NT
Sbjct: 645  TLGSWIWRRLLKHREVAKSFCKIEVNNGVNT 675


>gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CAB80742.1|
           AT4g02490 [Arabidopsis thaliana]
          Length = 657

 Score =  142 bits (358), Expect = 1e-31
 Identities = 83/254 (32%), Positives = 132/254 (51%)
 Frame = -2

Query: 839 HSKCKSMGISHLFFANDALLFCKGDMAYILAIKDILFQFSLVT*LNINTTKTSLLFGSMS 660
           H KC +  I+HL FA+D L+FC G ++ ++AI DIL  F   + L IN  KT+LL    +
Sbjct: 231 HPKCLAPMITHLSFADDILVFCDGSLSSLVAILDILDVFKKGSGLGINLQKTALLLDGGN 290

Query: 659 HEVGLDLANGMGISFICPHLTYLGLPLTSSRLGIRDCLLLVERLTSRISNWKNKTLSRAG 480
            E    +A  +G+S     + YLG+PL S ++   D   LV+R+ SR ++W  + LS AG
Sbjct: 291 FERNRIMAASLGVSQGSLPVRYLGVPLMSQKMKKHDYQPLVDRINSRFTSWTARHLSFAG 350

Query: 479 KLELI*SVLSSFQVYWSKTFVLPKKVLDNVSKIYNRFLWSGLNMTRKMHHASHEVLRFAK 300
           +L+L+ SV+ S   +W+  F+LP + L  + ++ N FLWSG   + +    S +++  +K
Sbjct: 351 RLQLLKSVIYSTINFWASIFILPNQCLHKLEQMCNAFLWSGAPNSAREAKISWDIVCSSK 410

Query: 299 DQGSLGMKDARTWNRAPYCGLVFRIAAIENSL*AKWTWSQQIKKHFFWTMKIPTSCFWVW 120
           + G LG+K   +WN+     L++ +     SL   W                     WVW
Sbjct: 411 ESGGLGLKRLSSWNKVLALKLIWLLFTASGSLWVSWV-------------------RWVW 451

Query: 119 RGILKYRTTTRKFI 78
           R + K R   R F+
Sbjct: 452 RKLCKLREVARPFV 465