BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00034750
         (935 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002327958.1| predicted protein [Populus trichocarpa] gi|2...   414   e-113
ref|XP_004152299.1| PREDICTED: pentatricopeptide repeat-containi...   399   e-109
ref|XP_003624339.1| Pentatricopeptide repeat-containing protein ...   370   e-100
ref|XP_003552721.1| PREDICTED: pentatricopeptide repeat-containi...   224   3e-56
gb|ACU18704.1| unknown [Glycine max]                                  224   3e-56

>ref|XP_002327958.1| predicted protein [Populus trichocarpa] gi|222837367|gb|EEE75746.1|
           predicted protein [Populus trichocarpa]
          Length = 484

 Score =  414 bits (1064), Expect = e-113
 Identities = 204/311 (65%), Positives = 244/311 (78%)
 Frame = +2

Query: 2   SNLVLQTLMNYRHLGRRTTLEFFSWAGFEMGFCFEDSVIEYMADFLGRRKLFDDLKCLLK 181
           S++VLQ LMNY+ LGR  TLEFFSWAG +MGF F+D VIEYM DFLGRRKLFDD+KC L 
Sbjct: 4   SDIVLQVLMNYKQLGRVKTLEFFSWAGMQMGFKFDDCVIEYMVDFLGRRKLFDDMKCFLM 63

Query: 182 TVYLSKGCVSCRTVSVCIRFLGREGRIKDALCLFEEMEVELNCKPDNFVCNNMLYVLCKK 361
           TV    G V+CR  S+CIRFLGR+GR ++ALCLF+EME + NC+PDNFV NNMLYVLCKK
Sbjct: 64  TVLFHNGRVTCRAFSICIRFLGRQGRFREALCLFQEMETKFNCRPDNFVYNNMLYVLCKK 123

Query: 362 ETSGEFIDKALMIFRKIESPDVYSYSNILVGLCKFGRIESAVEVFHEMCSANLVPTKSAV 541
           +TSGE ID AL IFR IESPD YSYSN+LVGLCKFGR E+A+E F EM  A LVPT+SAV
Sbjct: 124 DTSGELIDVALSIFRGIESPDTYSYSNVLVGLCKFGRFETAIEFFQEMGRARLVPTRSAV 183

Query: 542 NFLIGQLCRLNTNEECLERVRVRNFRRPFTILVPNVGLDGGAILAAVKIFWLMGDLGLFP 721
           NFL+ +LC L+  E  +  VRV + R+P+TILVPNVG   GAI  AV +F  + DLGL P
Sbjct: 184 NFLMRELCLLSAKEGAVNEVRVHSSRKPYTILVPNVGPKSGAIRPAVGVFLAVCDLGLLP 243

Query: 722 SPFIINQLISELCRLRKIDEAMEIFWVVEKKRLNCLEESYTIVIRALCDVRRVEEACQLF 901
           S F+I QLI+ELCRL K+ EA EI  VVE+++ NC+ E Y+IV++ALC+ R VEEA  LF
Sbjct: 244 STFVIIQLITELCRLGKMTEAFEILKVVEERKQNCVAEGYSIVMQALCEYRLVEEASHLF 303

Query: 902 GQMLSQELKPK 934
           G+MLS ELKPK
Sbjct: 304 GRMLSLELKPK 314


>ref|XP_004152299.1| PREDICTED: pentatricopeptide repeat-containing protein At4g20090-like
            [Cucumis sativus] gi|449484825|ref|XP_004156991.1|
            PREDICTED: pentatricopeptide repeat-containing protein
            At4g20090-like [Cucumis sativus]
          Length = 579

 Score =  399 bits (1025), Expect = e-109
 Identities = 195/311 (62%), Positives = 237/311 (76%)
 Frame = +2

Query: 2    SNLVLQTLMNYRHLGRRTTLEFFSWAGFEMGFCFEDSVIEYMADFLGRRKLFDDLKCLLK 181
            S+ VLQ LMNY+ LGR  TLEFFSW+G +MGF F+ SV+EYMADFLGRRKLFDD+KCLL 
Sbjct: 99   SDFVLQILMNYKLLGRAKTLEFFSWSGLQMGFRFDASVVEYMADFLGRRKLFDDMKCLLV 158

Query: 182  TVYLSKGCVSCRTVSVCIRFLGREGRIKDALCLFEEMEVELNCKPDNFVCNNMLYVLCKK 361
            TV   KG +SCRT S+CIRFLGR+GR+++ALCLFEEME +  CKPDN V NNMLY LCKK
Sbjct: 159  TVLSHKGRISCRTFSICIRFLGRQGRVREALCLFEEMEPKFGCKPDNLVFNNMLYALCKK 218

Query: 362  ETSGEFIDKALMIFRKIESPDVYSYSNILVGLCKFGRIESAVEVFHEMCSANLVPTKSAV 541
            E +GE ID AL IFR+IE PD YSYSN+++GLCKFGR  +A+E F EM  A LVPT++AV
Sbjct: 219  EPTGELIDTALKIFRRIELPDKYSYSNVIIGLCKFGRYSTAIEAFGEMYRAGLVPTRTAV 278

Query: 542  NFLIGQLCRLNTNEECLERVRVRNFRRPFTILVPNVGLDGGAILAAVKIFWLMGDLGLFP 721
            N LIG LC L+  E  +E+VRV +  RPFT+LVPNV    GAI  AV IFW    L L P
Sbjct: 279  NILIGNLCSLSAKEGAVEKVRVNSTYRPFTVLVPNVNPKSGAIEPAVGIFWAANKLSLVP 338

Query: 722  SPFIINQLISELCRLRKIDEAMEIFWVVEKKRLNCLEESYTIVIRALCDVRRVEEACQLF 901
            S F+  QLISELCRL ++ EA+ +  VVE  +L C EE Y++V++ALC+ R V+EA  LF
Sbjct: 339  SSFVTVQLISELCRLGQMQEAIRVLKVVEGDKLRCAEECYSVVMKALCEHRHVDEASDLF 398

Query: 902  GQMLSQELKPK 934
            G+MLSQ +KPK
Sbjct: 399  GRMLSQGMKPK 409


>ref|XP_003624339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355499354|gb|AES80557.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 578

 Score =  370 bits (951), Expect = e-100
 Identities = 181/311 (58%), Positives = 238/311 (76%)
 Frame = +2

Query: 2    SNLVLQTLMNYRHLGRRTTLEFFSWAGFEMGFCFEDSVIEYMADFLGRRKLFDDLKCLLK 181
            S+LVL+ LM+Y HLGR  TL+FFSWAG +M F F+DSVIEYM DF GRRKLFDD+KCLL 
Sbjct: 100  SDLVLRVLMSYNHLGRTKTLKFFSWAGTKMDFQFDDSVIEYMVDFFGRRKLFDDIKCLLM 159

Query: 182  TVYLSKGCVSCRTVSVCIRFLGREGRIKDALCLFEEMEVELNCKPDNFVCNNMLYVLCKK 361
            T+   KG VS + +S+CIRFLGREGRI + L LF+EME    CKPDN VCNN+LYVLCKK
Sbjct: 160  TIVAHKGQVSSKALSICIRFLGREGRINEVLSLFDEMESVFGCKPDNLVCNNVLYVLCKK 219

Query: 362  ETSGEFIDKALMIFRKIESPDVYSYSNILVGLCKFGRIESAVEVFHEMCSANLVPTKSAV 541
            ++S E I+ AL IF KIESPD YS SN++VGLC+ GR E+A+E+F +M    + PT+SA+
Sbjct: 220  QSSEEMIELALSIFDKIESPDTYSCSNMIVGLCRLGRFEAALEIFRKMDRVGVHPTRSAM 279

Query: 542  NFLIGQLCRLNTNEECLERVRVRNFRRPFTILVPNVGLDGGAILAAVKIFWLMGDLGLFP 721
            N LIG LC ++  E  +E+V+V   RRP++ILVPN+G +  AI  AV++F  + + GL P
Sbjct: 280  NVLIGDLCLMSAKEGSVEKVKVTKTRRPYSILVPNMGGNRAAIQPAVEVFSAVVNSGLLP 339

Query: 722  SPFIINQLISELCRLRKIDEAMEIFWVVEKKRLNCLEESYTIVIRALCDVRRVEEACQLF 901
            S F++ +L+SELCRL   +EA+++  +VE+K+L C++E Y+IVI+ALCD RRVEEA +LF
Sbjct: 340  STFVVFRLMSELCRLGNTEEAVKVLRIVEEKKLTCVQEGYSIVIKALCDHRRVEEAGKLF 399

Query: 902  GQMLSQELKPK 934
            G+ML   LKPK
Sbjct: 400  GRMLEIGLKPK 410


>ref|XP_003552721.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 367

 Score =  224 bits (570), Expect = 3e-56
 Identities = 110/199 (55%), Positives = 150/199 (75%)
 Frame = +2

Query: 338 MLYVLCKKETSGEFIDKALMIFRKIESPDVYSYSNILVGLCKFGRIESAVEVFHEMCSAN 517
           MLYVLCK+E+S E I+ AL IF KI++PD YS SN++VGLCK GR+ESA+E+F  M    
Sbjct: 1   MLYVLCKRESSLEMIELALSIFHKIDAPDTYSCSNMIVGLCKLGRLESALEIFDRMNRIG 60

Query: 518 LVPTKSAVNFLIGQLCRLNTNEECLERVRVRNFRRPFTILVPNVGLDGGAILAAVKIFWL 697
           ++PT+SAVN LIG+LC ++  E  +E+VRVRN RRP+TILVPN+G + GAI  AV++FW 
Sbjct: 61  VLPTRSAVNLLIGELCLMSGKEGSVEKVRVRNTRRPYTILVPNMGGNSGAIQPAVQVFWA 120

Query: 698 MGDLGLFPSPFIINQLISELCRLRKIDEAMEIFWVVEKKRLNCLEESYTIVIRALCDVRR 877
           +   GL PS F++ +L+SELCRL    EA+ +  +VE+++L  ++E Y++VI ALC+  R
Sbjct: 121 VCSSGLLPSAFVVVKLMSELCRLGNTVEAVRVLRIVEERKLTSVQEGYSVVINALCECCR 180

Query: 878 VEEACQLFGQMLSQELKPK 934
           VEEA  LFG+MLS  LKPK
Sbjct: 181 VEEASDLFGRMLSCGLKPK 199


>gb|ACU18704.1| unknown [Glycine max]
          Length = 367

 Score =  224 bits (570), Expect = 3e-56
 Identities = 110/199 (55%), Positives = 150/199 (75%)
 Frame = +2

Query: 338 MLYVLCKKETSGEFIDKALMIFRKIESPDVYSYSNILVGLCKFGRIESAVEVFHEMCSAN 517
           MLYVLCK+E+S E I+ AL IF KI++PD YS SN++VGLCK GR+ESA+E+F  M    
Sbjct: 1   MLYVLCKRESSLEMIELALSIFHKIDAPDTYSCSNMIVGLCKLGRLESALEIFDRMNRIG 60

Query: 518 LVPTKSAVNFLIGQLCRLNTNEECLERVRVRNFRRPFTILVPNVGLDGGAILAAVKIFWL 697
           ++PT+SAVN LIG+LC ++  E  +E+VRVRN RRP+TILVPN+G + GAI  AV++FW 
Sbjct: 61  VLPTRSAVNLLIGELCLMSGKEGSVEKVRVRNTRRPYTILVPNMGGNSGAIQPAVQVFWA 120

Query: 698 MGDLGLFPSPFIINQLISELCRLRKIDEAMEIFWVVEKKRLNCLEESYTIVIRALCDVRR 877
           +   GL PS F++ +L+SELCRL    EA+ +  +VE+++L  ++E Y++VI ALC+  R
Sbjct: 121 VCSSGLLPSAFVVVKLMSELCRLGNTVEAVRVLRIVEERKLTSVQEGYSVVINALCECCR 180

Query: 878 VEEACQLFGQMLSQELKPK 934
           VEEA  LFG+MLS  LKPK
Sbjct: 181 VEEASDLFGRMLSCGLKPK 199