BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00034682
         (344 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    62   6e-08
gb|ABN08954.1| Ribonuclease H [Medicago truncatula]                    61   1e-07
ref|XP_003605652.1| GDSL esterase/lipase [Medicago truncatula] g...    57   1e-06

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
 Frame = -2

Query: 337  IIKLNTDGSIMDNPGPPGISIAF*NYLGEFLLTVW*NIGVGTNFRAECLAIIVGVETALH 158
            ++K+NTDGS++   G       F +  G FL     NIG+ + F AE LA I+ +E A H
Sbjct: 1022 LLKVNTDGSVVG--GLAACGGLFRDSSGSFLGAFSCNIGLASVFHAETLAFILALEHAAH 1079

Query: 157  KGWKQLWVEFDSEAAVKAFENDQIP*ELV-SRW 62
             GW+ LW+E DS +A+  F N  +   L+ +RW
Sbjct: 1080 HGWRNLWLESDSTSALMIFSNSSLVQWLLRNRW 1112


>gb|ABN08954.1| Ribonuclease H [Medicago truncatula]
          Length = 175

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
 Frame = -2

Query: 334 IKLNTDGSIMDNPGPPGISIAF*NYLGEFLLTVW*NIGVGTNFRAECLAIIVGVETALHK 155
           +K+N DGS    P        F N+    L     NIG  T F+AE  A I  +E ++  
Sbjct: 11  VKINLDGSAFGAPSCGATGGVFRNWQTHSLGGFAQNIGHATCFKAELCAAIFAIEKSIEY 70

Query: 154 GWKQLWVEFDSEAAVKAF-ENDQIP*ELVSRWLSCKLEVQSIKFIA--IWREAN 2
             + +W+E DS+  VKAF  ++ +P +L +RW +C    Q IK +   I RE N
Sbjct: 71  NLRDIWLETDSKLVVKAFSSSEHVPWQLRTRWNNCLALAQKIKCVCTHIHREGN 124


>ref|XP_003605652.1| GDSL esterase/lipase [Medicago truncatula]
           gi|355506707|gb|AES87849.1| GDSL esterase/lipase
           [Medicago truncatula]
          Length = 1004

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
 Frame = -2

Query: 334 IKLNTDGSIMDNPGPPGISIAF*NYLGEFLLTVW*NIGVGTNFRAECLAIIVGVETALHK 155
           IK NTDG+        G    F +    FL     N+G G+ ++ E  AI+  VE A  +
Sbjct: 233 IKFNTDGASTATSSSCGG--VFRDQNANFLSCFAKNLGGGSAYQPELAAIMRVVEIAYQR 290

Query: 154 GWKQLWVEFDSEAAVKAFEN-DQIP*ELVSRWLSCKLEVQSIKFIA--IWREAN 2
            W+ +W+E DS   V AF+    IP  L +RW++C+  +  + F+   I+RE N
Sbjct: 291 NWRNIWIESDSALVVMAFKKMSMIPCRLRNRWINCRKLLCRMNFVITHIYREDN 344