BLASTX nr result
ID: Coptis25_contig00034601
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00034601 (234 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAO38219.1| RCa8 [Manihot esculenta] 62 6e-08 ref|XP_002325701.1| nbs-lrr resistance protein [Populus trichoca... 59 4e-07 ref|XP_002332539.1| BED finger-nbs-lrr resistance protein [Popul... 57 1e-06 ref|XP_002325714.1| BED finger-nbs-lrr resistance protein [Popul... 57 2e-06 ref|XP_002325703.1| BED finger-nbs-lrr resistance protein [Popul... 56 3e-06 >gb|AAO38219.1| RCa8 [Manihot esculenta] Length = 231 Score = 61.6 bits (148), Expect = 6e-08 Identities = 25/69 (36%), Positives = 45/69 (65%) Frame = -1 Query: 234 RSSNVCWRMKTNKTIEIEVLSQNEAWDLFVSKCDRQVFFRAGIESIARQMVRECDHSPVL 55 R VC M+T++ I+++VLS+ EAWDLF+ K R +E++A+ + EC + P+ Sbjct: 107 RLLEVCRGMETHREIKVDVLSKEEAWDLFIDKAGRDAILSPEVETVAKLITEECGYLPLA 166 Query: 54 LASLGKALR 28 + ++G+A+R Sbjct: 167 IITVGRAMR 175 >ref|XP_002325701.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222862576|gb|EEF00083.1| nbs-lrr resistance protein [Populus trichocarpa] Length = 1031 Score = 58.9 bits (141), Expect = 4e-07 Identities = 25/69 (36%), Positives = 44/69 (63%) Frame = -1 Query: 234 RSSNVCWRMKTNKTIEIEVLSQNEAWDLFVSKCDRQVFFRAGIESIARQMVRECDHSPVL 55 RS+ VC +MKT TI+++ +S+ EAW LF+ + + F + +E IA +VREC P+ Sbjct: 290 RSAKVCQQMKTQHTIKVQPISEKEAWTLFIERLGHDIAFSSEVEGIALNVVRECAGLPLG 349 Query: 54 LASLGKALR 28 + ++ ++R Sbjct: 350 IITIAASMR 358 >ref|XP_002332539.1| BED finger-nbs-lrr resistance protein [Populus trichocarpa] gi|222832683|gb|EEE71160.1| BED finger-nbs-lrr resistance protein [Populus trichocarpa] Length = 875 Score = 57.4 bits (137), Expect = 1e-06 Identities = 25/74 (33%), Positives = 47/74 (63%) Frame = -1 Query: 234 RSSNVCWRMKTNKTIEIEVLSQNEAWDLFVSKCDRQVFFRAGIESIARQMVRECDHSPVL 55 RS VC RM ++ I+++ + + EAW LF+ K R++ F +E+IA+ + REC P+ Sbjct: 458 RSETVCHRMACHRKIKVKTVFEGEAWTLFMEKLGRRIAFSPEVEAIAKAVARECAGLPLG 517 Query: 54 LASLGKALRFENDI 13 + ++ ++LR +D+ Sbjct: 518 IITVARSLRGVDDL 531 >ref|XP_002325714.1| BED finger-nbs-lrr resistance protein [Populus trichocarpa] gi|222862589|gb|EEF00096.1| BED finger-nbs-lrr resistance protein [Populus trichocarpa] Length = 1010 Score = 56.6 bits (135), Expect = 2e-06 Identities = 28/74 (37%), Positives = 42/74 (56%) Frame = -1 Query: 234 RSSNVCWRMKTNKTIEIEVLSQNEAWDLFVSKCDRQVFFRAGIESIARQMVRECDHSPVL 55 RS VC M I+++ LS+NEAWDLF K R + +E IA + RECD P+ Sbjct: 308 RSERVCQWMDRRSEIKVKPLSENEAWDLFKEKLGRDISLTPKVERIAVDIARECDGLPLG 367 Query: 54 LASLGKALRFENDI 13 + ++ +LR +D+ Sbjct: 368 IITIAGSLRRVDDL 381 >ref|XP_002325703.1| BED finger-nbs-lrr resistance protein [Populus trichocarpa] gi|222862578|gb|EEF00085.1| BED finger-nbs-lrr resistance protein [Populus trichocarpa] Length = 859 Score = 56.2 bits (134), Expect = 3e-06 Identities = 25/69 (36%), Positives = 41/69 (59%) Frame = -1 Query: 234 RSSNVCWRMKTNKTIEIEVLSQNEAWDLFVSKCDRQVFFRAGIESIARQMVRECDHSPVL 55 RS VC MKT TI+++ +S+ EAW LF + + F + +E IA +VREC P+ Sbjct: 448 RSEKVCQYMKTQHTIKVQPISEREAWTLFTERLGHDIAFSSEVERIAEDIVRECAGLPLG 507 Query: 54 LASLGKALR 28 + ++ ++R Sbjct: 508 IITIAGSMR 516