BLASTX nr result
ID: Coptis25_contig00034567
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00034567 (735 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAW63130.1| 31 kDa putative protein [Strawberry latent ringsp... 214 2e-53 ref|NP_620833.1| 36 kDa protein [Strawberry latent ringspot viru... 166 5e-39 >gb|AAW63130.1| 31 kDa putative protein [Strawberry latent ringspot virus satellite RNA] Length = 287 Score = 214 bits (544), Expect = 2e-53 Identities = 124/244 (50%), Positives = 153/244 (62%), Gaps = 11/244 (4%) Frame = +2 Query: 2 WVPLRNPTSAGGSSRRERPQRAVTKQPVVRPIRAP--VKVENRFSPLCVEE----SLVAP 163 WVP+R P +AGG+ RRERP K VRPIR P VK NRF+PL V+E ++ AP Sbjct: 46 WVPVRAPIAAGGNFRRERPLVVSHKTQQVRPIRMPAAVKTSNRFAPLSVKEGVTAAVAAP 105 Query: 164 TKSKITYADVVRAK--VSPAKAKKGVVTLIETSRDFKLFED---LPEPVAIPGQTPQEAA 328 K +YAD +R+ V P+ +KGVVTL+ET +DF LF D + V PGQT EA Sbjct: 106 INPKKSYADALRSSAFVKPS-VRKGVVTLVETEKDFALFGDEFTQNQVVPCPGQTLPEAE 164 Query: 329 SLSREFAKRALVFSGRRLMPVGLPEDHSTDPFASPLPRGPVPARRVVHVEPFTWDNMSYG 508 +L REF KR L FSGRRL GLP +DPFASP P P +V HV+P +W+ MS+G Sbjct: 165 ALQREFHKRTLAFSGRRLSVSGLPS--GSDPFASPSPVRPALTPKVAHVDPVSWEGMSFG 222 Query: 509 QCSRTLALYKQLTSCFGSKMCQETLYKEAVKKVCKLTDVVPVSIPEFMGRFGQVDFGAAP 688 QCSR L LYKQL SCFG KM +LY AV+KV +L + PV+IPE R GQVD A Sbjct: 223 QCSRALTLYKQLCSCFGVKMFSSSLYGMAVRKVLRLREDFPVAIPENFARLGQVDRDARA 282 Query: 689 ARVY 700 ++ Sbjct: 283 VHLF 286 >ref|NP_620833.1| 36 kDa protein [Strawberry latent ringspot virus satellite RNA] gi|478364|pir||JQ2018 hypothetical 36.5K protein - strawberry latent ringspot virus gi|312511|emb|CAA49480.1| 36 kDa protein [Strawberry latent ringspot virus satellite RNA] Length = 331 Score = 166 bits (420), Expect = 5e-39 Identities = 107/217 (49%), Positives = 129/217 (59%), Gaps = 12/217 (5%) Frame = +2 Query: 2 WVPLRNPTSAGGSSRRERPQRAVTKQPVVRPIRAP--VKVENRFSPLCVEESL---VAP- 163 WVP+R P +AGGS RRERP K VRPIR P VK NRF+ L V+E VAP Sbjct: 46 WVPVRAPIAAGGSFRRERPPVVSHKTQQVRPIRTPTAVKTSNRFASLSVKEEAPEAVAPF 105 Query: 164 TKSKITYADVVRAK--VSPAKAKKGVVTLIETSRDFKLFED---LPEPVAIPGQTPQEAA 328 K +YAD +R+ V P+ A+KGVVTL+ET +DF LF D + V PGQT EA Sbjct: 106 NPKKKSYADALRSSAFVKPS-ARKGVVTLVETEKDFALFCDEFTQNQVVPCPGQTLSEAE 164 Query: 329 SLSREFAKRALVFSGRRLMPVGLPEDHSTDPFASPLPR-GPVPARRVVHVEPFTWDNMSY 505 SL REF KRA FSG+RL GLPE P S L R + HV+P +W+ MS+ Sbjct: 165 SLQREFHKRAFAFSGKRLSVSGLPEG----PIPSLLLRQSACNCPKGCHVDPVSWEGMSF 220 Query: 506 GQCSRTLALYKQLTSCFGSKMCQETLYKEAVKKVCKL 616 GQCSR L LY+QL CFG KM +LY AV++ L Sbjct: 221 GQCSRALTLYRQLCGCFGMKMFSSSLYGMAVRRFSAL 257