BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00034567
         (735 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAW63130.1| 31 kDa putative protein [Strawberry latent ringsp...   214   2e-53
ref|NP_620833.1| 36 kDa protein [Strawberry latent ringspot viru...   166   5e-39

>gb|AAW63130.1| 31 kDa putative protein [Strawberry latent ringspot virus satellite
           RNA]
          Length = 287

 Score =  214 bits (544), Expect = 2e-53
 Identities = 124/244 (50%), Positives = 153/244 (62%), Gaps = 11/244 (4%)
 Frame = +2

Query: 2   WVPLRNPTSAGGSSRRERPQRAVTKQPVVRPIRAP--VKVENRFSPLCVEE----SLVAP 163
           WVP+R P +AGG+ RRERP     K   VRPIR P  VK  NRF+PL V+E    ++ AP
Sbjct: 46  WVPVRAPIAAGGNFRRERPLVVSHKTQQVRPIRMPAAVKTSNRFAPLSVKEGVTAAVAAP 105

Query: 164 TKSKITYADVVRAK--VSPAKAKKGVVTLIETSRDFKLFED---LPEPVAIPGQTPQEAA 328
              K +YAD +R+   V P+  +KGVVTL+ET +DF LF D     + V  PGQT  EA 
Sbjct: 106 INPKKSYADALRSSAFVKPS-VRKGVVTLVETEKDFALFGDEFTQNQVVPCPGQTLPEAE 164

Query: 329 SLSREFAKRALVFSGRRLMPVGLPEDHSTDPFASPLPRGPVPARRVVHVEPFTWDNMSYG 508
           +L REF KR L FSGRRL   GLP    +DPFASP P  P    +V HV+P +W+ MS+G
Sbjct: 165 ALQREFHKRTLAFSGRRLSVSGLPS--GSDPFASPSPVRPALTPKVAHVDPVSWEGMSFG 222

Query: 509 QCSRTLALYKQLTSCFGSKMCQETLYKEAVKKVCKLTDVVPVSIPEFMGRFGQVDFGAAP 688
           QCSR L LYKQL SCFG KM   +LY  AV+KV +L +  PV+IPE   R GQVD  A  
Sbjct: 223 QCSRALTLYKQLCSCFGVKMFSSSLYGMAVRKVLRLREDFPVAIPENFARLGQVDRDARA 282

Query: 689 ARVY 700
             ++
Sbjct: 283 VHLF 286


>ref|NP_620833.1| 36 kDa protein [Strawberry latent ringspot virus satellite RNA]
           gi|478364|pir||JQ2018 hypothetical 36.5K protein -
           strawberry latent ringspot virus
           gi|312511|emb|CAA49480.1| 36 kDa protein [Strawberry
           latent ringspot virus satellite RNA]
          Length = 331

 Score =  166 bits (420), Expect = 5e-39
 Identities = 107/217 (49%), Positives = 129/217 (59%), Gaps = 12/217 (5%)
 Frame = +2

Query: 2   WVPLRNPTSAGGSSRRERPQRAVTKQPVVRPIRAP--VKVENRFSPLCVEESL---VAP- 163
           WVP+R P +AGGS RRERP     K   VRPIR P  VK  NRF+ L V+E     VAP 
Sbjct: 46  WVPVRAPIAAGGSFRRERPPVVSHKTQQVRPIRTPTAVKTSNRFASLSVKEEAPEAVAPF 105

Query: 164 TKSKITYADVVRAK--VSPAKAKKGVVTLIETSRDFKLFED---LPEPVAIPGQTPQEAA 328
              K +YAD +R+   V P+ A+KGVVTL+ET +DF LF D     + V  PGQT  EA 
Sbjct: 106 NPKKKSYADALRSSAFVKPS-ARKGVVTLVETEKDFALFCDEFTQNQVVPCPGQTLSEAE 164

Query: 329 SLSREFAKRALVFSGRRLMPVGLPEDHSTDPFASPLPR-GPVPARRVVHVEPFTWDNMSY 505
           SL REF KRA  FSG+RL   GLPE     P  S L R       +  HV+P +W+ MS+
Sbjct: 165 SLQREFHKRAFAFSGKRLSVSGLPEG----PIPSLLLRQSACNCPKGCHVDPVSWEGMSF 220

Query: 506 GQCSRTLALYKQLTSCFGSKMCQETLYKEAVKKVCKL 616
           GQCSR L LY+QL  CFG KM   +LY  AV++   L
Sbjct: 221 GQCSRALTLYRQLCGCFGMKMFSSSLYGMAVRRFSAL 257