BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00034458
         (304 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas...    66   3e-09
ref|XP_002438972.1| hypothetical protein SORBIDRAFT_10g029210 [S...    65   6e-09
gb|ABA96203.1| retrotransposon protein, putative, unclassified, ...    65   7e-09
gb|EEE52627.1| hypothetical protein OsJ_34967 [Oryza sativa Japo...    65   7e-09
emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulga...    64   1e-08

>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase);
           Polynucleotidyl transferase, Ribonuclease H fold
           [Medicago truncatula]
          Length = 729

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
 Frame = -3

Query: 296 CVSKAEGGLGFKNTHWFNLAILCKLLWRVLTE-KSLWSDLMEAKYQKIITLNNFVDKSTN 120
           C+ K  GGLGFK  H  N A L K+LW ++ +   LW  ++ +KY +   LNN +     
Sbjct: 275 CLPKMNGGLGFKRPHHMNEAFLMKMLWNLIKQPDKLWCRVLYSKYGRNNDLNNNISSQPY 334

Query: 119 ASHIC*GLMKVKKYVEQGALWSIGDGASVKF*TDQWVT 6
            S +   ++ +    ++  +W IGDG S  F  D+W++
Sbjct: 335 DSPLWKAIVGIWDDFKRHVIWQIGDGRSTNFWLDKWIS 372


>ref|XP_002438972.1| hypothetical protein SORBIDRAFT_10g029210 [Sorghum bicolor]
           gi|241917195|gb|EER90339.1| hypothetical protein
           SORBIDRAFT_10g029210 [Sorghum bicolor]
          Length = 240

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
 Frame = -3

Query: 296 CVSKAEGGLGFKNTHWFNLAILCKLLWRVL-TEKSLWSDLMEAKYQKIITLNNFVDKSTN 120
           C  K EGGLGF++ H FNLA+L +  WR+L T  SL   +++AKY +   L +   ++  
Sbjct: 89  CRRKEEGGLGFRDLHLFNLAMLARQAWRLLMTPDSLCGQVLKAKYYRNCGLLD-AKEAPG 147

Query: 119 ASHIC*GLMKVKKYVEQGALWSIGDGASVKF*TDQWV 9
            S+    +++  K ++ G +W +GDG S+K   + W+
Sbjct: 148 ISYTWRSILRGIKALKDGLIWCVGDGNSIKIWLNPWI 184


>gb|ABA96203.1| retrotransposon protein, putative, unclassified, expressed [Oryza
           sativa Japonica Group]
          Length = 1378

 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 34/99 (34%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
 Frame = -3

Query: 302 KPCVSKAEGGLGFKNTHWFNLAILCKLLWRVLTE-KSLWSDLMEAKYQKIITLNNFVDKS 126
           K C+ K +GG+GF++   FNLA+L K +WR+L++  SL + ++ A+Y +   L N   KS
Sbjct: 307 KMCMPKGKGGMGFRDLQSFNLALLAKQVWRLLSDPDSLCARVLRARYYRDGKLLNARMKS 366

Query: 125 TNASHIC*GLMKVKKYVEQGALWSIGDGASVKF*TDQWV 9
             +S+    ++   +  +QG +W +GDG  +K   D W+
Sbjct: 367 -GSSYTWQSILAGLQCFKQGYIWRVGDGTQIKIWEDNWI 404


>gb|EEE52627.1| hypothetical protein OsJ_34967 [Oryza sativa Japonica Group]
          Length = 1395

 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 34/99 (34%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
 Frame = -3

Query: 302 KPCVSKAEGGLGFKNTHWFNLAILCKLLWRVLTE-KSLWSDLMEAKYQKIITLNNFVDKS 126
           K C+ K +GG+GF++   FNLA+L K +WR+L++  SL + ++ A+Y +   L N   KS
Sbjct: 337 KMCMPKGKGGMGFRDLQSFNLALLAKQVWRLLSDPDSLCARVLRARYYRDGKLLNARMKS 396

Query: 125 TNASHIC*GLMKVKKYVEQGALWSIGDGASVKF*TDQWV 9
             +S+    ++   +  +QG +W +GDG  +K   D W+
Sbjct: 397 -GSSYTWQSILAGLQCFKQGYIWRVGDGTQIKIWEDNWI 434


>emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1389

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
 Frame = -3

Query: 302  KPCVSKAEGGLGFKNTHWFNLAILCKLLWRVLTEK-SLWSDLMEAKYQKIITLNNFVDK- 129
            K C  K+ GG+GF+     N+A+  KLLW+++  K ++W  L+  KY K    N  V K 
Sbjct: 859  KICQPKSVGGVGFRKAEVTNIALQMKLLWKIMVSKDNIWVKLVTQKYLK--EQNLLVCKI 916

Query: 128  STNASHIC*GLMKVKKYVEQGALWSIGDGASVKF*TDQWV 9
             +NAS     L++ + +  +G  W IGDG  + F TD W+
Sbjct: 917  PSNASWQWKNLLRHRNFFSKGLRWLIGDGQDISFWTDNWI 956