BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00034451
         (345 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002526196.1| pentatricopeptide repeat-containing protein,...    92   6e-17
ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containi...    88   6e-16
ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containi...    86   2e-15
emb|CBI29077.3| unnamed protein product [Vitis vinifera]               86   2e-15
ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containi...    85   5e-15

>ref|XP_002526196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223534500|gb|EEF36200.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 491

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 45/109 (41%), Positives = 64/109 (58%), Gaps = 4/109 (3%)
 Frame = +3

Query: 30  STFTWNSLFRT----TPPHHALPLYTKMLQSNSYPNKFTFTFLLKACNKITKPHFGIHLH 197
           STF WN++ R       P  A+ L+  ML SN  PN +T++FL KAC  +   + G+  H
Sbjct: 75  STFIWNTVIRAFAEKNEPRKAIMLFKNMLYSNFLPNNYTYSFLFKACTDLNNLYLGLACH 134

Query: 198 CHLIKFGFGSDAFLLASLIGTYADAGLVKISQKLFDIMSNRDVVTWTAL 344
           C  IK G+    F+   L+  +A  G +  ++KLFD+ SNRDV+TWTAL
Sbjct: 135 CQSIKLGWEFYDFVQNGLVHMFAIFGCMDSARKLFDLSSNRDVITWTAL 183


>ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
           gi|449529868|ref|XP_004171920.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 44/107 (41%), Positives = 64/107 (59%), Gaps = 4/107 (3%)
 Frame = +3

Query: 36  FTWNSLFR----TTPPHHALPLYTKMLQSNSYPNKFTFTFLLKACNKITKPHFGIHLHCH 203
           F WNS+ R    +  P  AL  + +M+ S   PN +TF FLLK+C K+   H G  +H H
Sbjct: 95  FIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAH 154

Query: 204 LIKFGFGSDAFLLASLIGTYADAGLVKISQKLFDIMSNRDVVTWTAL 344
           ++K GF SD F+  SLI  YA +G +  +Q +FD  + RD +++TAL
Sbjct: 155 VLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTAL 201


>ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 43/105 (40%), Positives = 69/105 (65%), Gaps = 4/105 (3%)
 Frame = +3

Query: 42  WNSLFR----TTPPHHALPLYTKMLQSNSYPNKFTFTFLLKACNKITKPHFGIHLHCHLI 209
           +NSL R    +  P  ALPLY  MLQS   P+  T+ F++KACN+ +   FG+ +H H++
Sbjct: 163 YNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVV 222

Query: 210 KFGFGSDAFLLASLIGTYADAGLVKISQKLFDIMSNRDVVTWTAL 344
           K GF  D+++++SLI  YA+   +  +++LF++ S RDVV+W A+
Sbjct: 223 KSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAM 267


>emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 43/105 (40%), Positives = 69/105 (65%), Gaps = 4/105 (3%)
 Frame = +3

Query: 42  WNSLFR----TTPPHHALPLYTKMLQSNSYPNKFTFTFLLKACNKITKPHFGIHLHCHLI 209
           +NSL R    +  P  ALPLY  MLQS   P+  T+ F++KACN+ +   FG+ +H H++
Sbjct: 134 YNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVV 193

Query: 210 KFGFGSDAFLLASLIGTYADAGLVKISQKLFDIMSNRDVVTWTAL 344
           K GF  D+++++SLI  YA+   +  +++LF++ S RDVV+W A+
Sbjct: 194 KSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAM 238


>ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Vitis vinifera]
          Length = 512

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 42/109 (38%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
 Frame = +3

Query: 30  STFTWNSLFRTT----PPHHALPLYTKMLQSNSYPNKFTFTFLLKACNKITKPHFGIHLH 197
           + F +N L +      P H    LYT+M      PN+ +FTFL  AC  ++    G  LH
Sbjct: 46  TVFLYNKLIQAYSSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLH 105

Query: 198 CHLIKFGFGSDAFLLASLIGTYADAGLVKISQKLFDIMSNRDVVTWTAL 344
            H +K GFG D F L +L+  YA  GL+ +++K FD M+ RDV TW ++
Sbjct: 106 THFVKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSM 154