BLASTX nr result
ID: Coptis25_contig00034439
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00034439
(1170 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitoc... 347 e-118
emb|CBI18448.3| unnamed protein product [Vitis vinifera] 337 e-115
ref|XP_004158518.1| PREDICTED: RNA pseudourine synthase 3, mitoc... 306 e-101
ref|XP_004138653.1| PREDICTED: RNA pseudourine synthase 3, mitoc... 306 e-101
gb|EAZ43360.1| hypothetical protein OsJ_27960 [Oryza sativa Japo... 267 1e-92
>ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Vitis
vinifera]
Length = 479
Score = 347 bits (889), Expect(2) = e-118
Identities = 176/262 (67%), Positives = 208/262 (79%)
Frame = -1
Query: 969 KGVLPTVRHYSXXXXXXXXXXXXXXRVSNNIAQLGSPKKEIKPRQLLSLPAFPAKLQHPL 790
+G+ P VRHYS RVSNN+AQLGSPK+ KPRQLLSLP FPA HPL
Sbjct: 10 QGLFPVVRHYSRIAPPRPASAAPVIRVSNNVAQLGSPKEGPKPRQLLSLPPFPA---HPL 66
Query: 789 PGRNLGGHYGQPSHVTAVTWLKYYFDEICGSVIQSHFNKGLVQMECSDRIDTSKGEQDLQ 610
PG++L G P+HVTA++W+KYYFDEI GSV+QSHFNKGLV ME S+ D+S ++
Sbjct: 67 PGKSLVNVSGLPTHVTAISWIKYYFDEIPGSVVQSHFNKGLVHMERSNLDDSSLEKEGQI 126
Query: 609 QSLRKINPNEIMEVGAKIYVPVSVAETKISKRFNVIPSGTLYPNADEIEYLQRLVMYKDS 430
+ LRKI PNE+ME G +IYVPVSVAE +ISKRF+ IPSGTL+PNADEIEYLQRLV YKD
Sbjct: 127 KPLRKIKPNEVMEAGTRIYVPVSVAEARISKRFDTIPSGTLHPNADEIEYLQRLVTYKDP 186
Query: 429 AIMILNKPPKLPVKGNLPVHNSMDALAAGALSYGFEEGPKLVHRLDRESSGLLLMGRSKE 250
AI++LNKPPK+P+KGNLPVHNSMDALAA AL++ +EEGPKLVHRLDRESSGLLLMGR+KE
Sbjct: 187 AILVLNKPPKVPLKGNLPVHNSMDALAAAALTFDYEEGPKLVHRLDRESSGLLLMGRTKE 246
Query: 249 SLTRLQWLFSDTIKAKSPYKSF 184
S+ L WLFSD KAKS K++
Sbjct: 247 SVAHLHWLFSDINKAKSLSKAW 268
Score = 105 bits (262), Expect(2) = e-118
Identities = 49/60 (81%), Positives = 57/60 (95%)
Frame = -3
Query: 181 SWNDACEATMQRYWALVIGSPKEKQGVIHAPLSKVLLNDGKIERVIIAHPSGIEASQEAI 2
+W+DACEAT QRYWALVIGSPK+K+GVIHAPLSKVLL+DGK ERVI+A+ SG+EASQEAI
Sbjct: 267 AWDDACEATCQRYWALVIGSPKQKEGVIHAPLSKVLLDDGKTERVILANQSGLEASQEAI 326
>emb|CBI18448.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 337 bits (865), Expect(2) = e-115
Identities = 173/264 (65%), Positives = 208/264 (78%), Gaps = 2/264 (0%)
Frame = -1
Query: 969 KGVLPTVRHYSXXXXXXXXXXXXXXRVSNNIAQLGSPKKEIKPRQLLSLPAFPAKLQHPL 790
+G+ P VRHYS RVSNN+AQLGSPK+ KPRQLLSLP FPA HPL
Sbjct: 10 QGLFPVVRHYSRIAPPRPASAAPVIRVSNNVAQLGSPKEGPKPRQLLSLPPFPA---HPL 66
Query: 789 PGRNLGGHYGQPSHVTAVTWLKYYFDEICGSVIQSHFNKGLVQMECSDRIDTSKGEQDLQ 610
PG++L G P+HVTA++W+KYYFDEI GSV+QSHFNKGLV ME S+ D+S ++
Sbjct: 67 PGKSLVNVSGLPTHVTAISWIKYYFDEIPGSVVQSHFNKGLVHMERSNLDDSSLEKEGQI 126
Query: 609 QSLRKINPNEIMEVGAKIYVPVSVAETKISKRFNVIPSGTLYPNADEIEYLQR--LVMYK 436
+ LRKI PNE+ME G +IYVPVSVAE +ISKRF+ IPSGTL+PNADEIEYLQR L+ ++
Sbjct: 127 KPLRKIKPNEVMEAGTRIYVPVSVAEARISKRFDTIPSGTLHPNADEIEYLQRLWLLKFQ 186
Query: 435 DSAIMILNKPPKLPVKGNLPVHNSMDALAAGALSYGFEEGPKLVHRLDRESSGLLLMGRS 256
D AI++LNKPPK+P+KGNLPVHNSMDALAA AL++ +EEGPKLVHRLDRESSGLLLMGR+
Sbjct: 187 DPAILVLNKPPKVPLKGNLPVHNSMDALAAAALTFDYEEGPKLVHRLDRESSGLLLMGRT 246
Query: 255 KESLTRLQWLFSDTIKAKSPYKSF 184
KES+ L WLFSD KAKS K++
Sbjct: 247 KESVAHLHWLFSDINKAKSLSKAW 270
Score = 105 bits (262), Expect(2) = e-115
Identities = 49/60 (81%), Positives = 57/60 (95%)
Frame = -3
Query: 181 SWNDACEATMQRYWALVIGSPKEKQGVIHAPLSKVLLNDGKIERVIIAHPSGIEASQEAI 2
+W+DACEAT QRYWALVIGSPK+K+GVIHAPLSKVLL+DGK ERVI+A+ SG+EASQEAI
Sbjct: 269 AWDDACEATCQRYWALVIGSPKQKEGVIHAPLSKVLLDDGKTERVILANQSGLEASQEAI 328
>ref|XP_004158518.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Cucumis
sativus]
Length = 471
Score = 306 bits (783), Expect(2) = e-101
Identities = 162/264 (61%), Positives = 195/264 (73%)
Frame = -1
Query: 975 LRKGVLPTVRHYSXXXXXXXXXXXXXXRVSNNIAQLGSPKKEIKPRQLLSLPAFPAKLQH 796
+R+ +L R YS RVSNNIAQLGSPK+ K RQLLSLP FP +
Sbjct: 5 MRRHLLLATRCYSRISPPPPAYAKPIIRVSNNIAQLGSPKEGPKARQLLSLPPFPG---Y 61
Query: 795 PLPGRNLGGHYGQPSHVTAVTWLKYYFDEICGSVIQSHFNKGLVQMECSDRIDTSKGEQD 616
PLPG+N G G+ +HVTA+ W+KYYFDEI S IQSHF KGLVQ+EC E+
Sbjct: 62 PLPGKNQVGVSGESTHVTAIRWVKYYFDEIQDSQIQSHFRKGLVQVECPQL--GGLDEKG 119
Query: 615 LQQSLRKINPNEIMEVGAKIYVPVSVAETKISKRFNVIPSGTLYPNADEIEYLQRLVMYK 436
+ +RKI EIME GA+I++PVSVAE K+++RF+ IPSGTLYPNADEI+YLQRLV YK
Sbjct: 120 NLKPMRKIRSGEIMETGARIHLPVSVAEMKVARRFDTIPSGTLYPNADEIKYLQRLVKYK 179
Query: 435 DSAIMILNKPPKLPVKGNLPVHNSMDALAAGALSYGFEEGPKLVHRLDRESSGLLLMGRS 256
DSAI++LNKPPKLPVKG LPVHNSMDALA ALSY +++GPKLVHRLDRESSG+LLMGR+
Sbjct: 180 DSAIIVLNKPPKLPVKGTLPVHNSMDALADAALSYDYDDGPKLVHRLDRESSGILLMGRT 239
Query: 255 KESLTRLQWLFSDTIKAKSPYKSF 184
KES+ LQWLFS+ AK K++
Sbjct: 240 KESVDHLQWLFSNIRNAKFTCKAW 263
Score = 91.3 bits (225), Expect(2) = e-101
Identities = 42/60 (70%), Positives = 52/60 (86%)
Frame = -3
Query: 181 SWNDACEATMQRYWALVIGSPKEKQGVIHAPLSKVLLNDGKIERVIIAHPSGIEASQEAI 2
+W +AC AT Q+YWALVIG P+E++GVI APLSKVLL+DGK ERVI+A+ + IEASQEAI
Sbjct: 262 AWEEACNATYQKYWALVIGCPREREGVISAPLSKVLLDDGKTERVILANKASIEASQEAI 321
>ref|XP_004138653.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Cucumis
sativus]
Length = 471
Score = 306 bits (783), Expect(2) = e-101
Identities = 162/264 (61%), Positives = 195/264 (73%)
Frame = -1
Query: 975 LRKGVLPTVRHYSXXXXXXXXXXXXXXRVSNNIAQLGSPKKEIKPRQLLSLPAFPAKLQH 796
+R+ +L R YS RVSNNIAQLGSPK+ K RQLLSLP FP +
Sbjct: 5 MRRHLLLATRCYSRISPPPPAYAKPIIRVSNNIAQLGSPKEGPKARQLLSLPPFPG---Y 61
Query: 795 PLPGRNLGGHYGQPSHVTAVTWLKYYFDEICGSVIQSHFNKGLVQMECSDRIDTSKGEQD 616
PLPG+N G G+ +HVTA+ W+KYYFDEI S IQSHF KGLVQ+EC E+
Sbjct: 62 PLPGKNQVGVSGESTHVTAIRWVKYYFDEIQDSQIQSHFRKGLVQVECPQL--GGLDEKG 119
Query: 615 LQQSLRKINPNEIMEVGAKIYVPVSVAETKISKRFNVIPSGTLYPNADEIEYLQRLVMYK 436
+ +RKI EIME GA+I++PVSVAE K+++RF+ IPSGTLYPNADEI+YLQRLV YK
Sbjct: 120 NLKPMRKIRSGEIMETGARIHLPVSVAEMKVARRFDTIPSGTLYPNADEIKYLQRLVKYK 179
Query: 435 DSAIMILNKPPKLPVKGNLPVHNSMDALAAGALSYGFEEGPKLVHRLDRESSGLLLMGRS 256
DSAI++LNKPPKLPVKG LPVHNSMDALA ALSY +++GPKLVHRLDRESSG+LLMGR+
Sbjct: 180 DSAIIVLNKPPKLPVKGTLPVHNSMDALADAALSYDYDDGPKLVHRLDRESSGILLMGRT 239
Query: 255 KESLTRLQWLFSDTIKAKSPYKSF 184
KES+ LQWLFS+ AK K++
Sbjct: 240 KESVDHLQWLFSNIRNAKFTCKAW 263
Score = 90.9 bits (224), Expect(2) = e-101
Identities = 41/60 (68%), Positives = 52/60 (86%)
Frame = -3
Query: 181 SWNDACEATMQRYWALVIGSPKEKQGVIHAPLSKVLLNDGKIERVIIAHPSGIEASQEAI 2
+W +AC AT Q+YWALVIG P+E++GVI APLSKVLL+DGK ERV++A+ + IEASQEAI
Sbjct: 262 AWEEACNATYQKYWALVIGCPREREGVISAPLSKVLLDDGKTERVVLANKASIEASQEAI 321
>gb|EAZ43360.1| hypothetical protein OsJ_27960 [Oryza sativa Japonica Group]
Length = 509
Score = 267 bits (682), Expect(2) = 1e-92
Identities = 136/230 (59%), Positives = 171/230 (74%), Gaps = 1/230 (0%)
Frame = -1
Query: 885 NNIAQLGSPKKEIKPRQLLSLPAFPAKLQ-HPLPGRNLGGHYGQPSHVTAVTWLKYYFDE 709
+N+A+LG PK +PRQLLSLP FP PLPGR P VTAV+W+K+Y +
Sbjct: 70 SNVARLGKPKPGPRPRQLLSLPPFPGGGDGDPLPGRKAAA----PRRVTAVSWVKHYLAD 125
Query: 708 ICGSVIQSHFNKGLVQMECSDRIDTSKGEQDLQQSLRKINPNEIMEVGAKIYVPVSVAET 529
+ V+Q+HFNK LV ECSD + + + + L+KI N++ME G +I++PVSVAE
Sbjct: 126 VPQEVVQAHFNKRLVYSECSDHEVSVETIKSQKHHLKKIKHNDVMEPGMRIHLPVSVAEG 185
Query: 528 KISKRFNVIPSGTLYPNADEIEYLQRLVMYKDSAIMILNKPPKLPVKGNLPVHNSMDALA 349
+I KR+ IP+ TL+PN DEIEYL+RLV++KDSAI++LNKPPK+P+KGNLPVHNSMD LA
Sbjct: 186 EIKKRYETIPTATLHPNKDEIEYLRRLVIHKDSAILVLNKPPKVPMKGNLPVHNSMDVLA 245
Query: 348 AGALSYGFEEGPKLVHRLDRESSGLLLMGRSKESLTRLQWLFSDTIKAKS 199
A ALSYG EEGPKLVHRLDRESSGLLL GR+KES TRL WLF+ AK+
Sbjct: 246 AAALSYGNEEGPKLVHRLDRESSGLLLFGRTKESFTRLHWLFTSVNLAKT 295
Score = 100 bits (250), Expect(2) = 1e-92
Identities = 45/59 (76%), Positives = 54/59 (91%)
Frame = -3
Query: 178 WNDACEATMQRYWALVIGSPKEKQGVIHAPLSKVLLNDGKIERVIIAHPSGIEASQEAI 2
WN ACEA MQRYWALVIG+PKE++G+I APLSKVLL+DGK ERVI+AHPSGI+ +QEA+
Sbjct: 300 WNAACEAYMQRYWALVIGTPKEREGIISAPLSKVLLDDGKAERVILAHPSGIDGAQEAV 358