BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00034282
         (448 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]   187   8e-46
ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containi...   186   2e-45
ref|XP_002520572.1| pentatricopeptide repeat-containing protein,...   177   1e-42
ref|XP_002308773.1| predicted protein [Populus trichocarpa] gi|2...   173   1e-41
ref|XP_002883344.1| pentatricopeptide repeat-containing protein ...   160   1e-37

>emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
          Length = 825

 Score =  187 bits (475), Expect = 8e-46
 Identities = 93/148 (62%), Positives = 118/148 (79%)
 Frame = +1

Query: 4   KALMQFRLMMDMGIKPTVVSFVNVFPAVAAVGDKNNADVLYGLVLKLGTDYVNDLFAVSS 183
           +A   FR MM MGI+PT VSFVNVFPAV  + D +NA+VLYGLV+KLG+DYV+D F VSS
Sbjct: 201 EAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMNDYDNANVLYGLVVKLGSDYVDDFFVVSS 260

Query: 184 AISMYSDFDDVDTARKVFDLSWERNIQVWNTMIGGYVQNDCYRDGLDLFFRVLELDKIVV 363
           AI MY++   VD AR++FD   ERN +VWNTMIGGYVQN+C  + +DLF +V+E ++  +
Sbjct: 261 AIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXL 320

Query: 364 PDTVTFLASLTAVSQLQWLDLGQQLHAY 447
            D VTFL++LTA+SQLQWLDLG+QLHAY
Sbjct: 321 -DDVTFLSALTAISQLQWLDLGRQLHAY 347



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 41/130 (31%), Positives = 71/130 (54%)
 Frame = +1

Query: 58  VSFVNVFPAVAAVGDKNNADVLYGLVLKLGTDYVNDLFAVSSAISMYSDFDDVDTARKVF 237
           V+F++   A++ +   +    L+  +LK  T  +  +  +++ I MYS    + T+ KVF
Sbjct: 323 VTFLSALTAISQLQWLDLGRQLHAYILKSST--ILQVVILNAIIVMYSRCGSIGTSFKVF 380

Query: 238 DLSWERNIQVWNTMIGGYVQNDCYRDGLDLFFRVLELDKIVVPDTVTFLASLTAVSQLQW 417
               ER++  WNTM+  +VQN    +GL L F + +   +V  D+VT  A L+  S L+ 
Sbjct: 381 SNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQGFMV--DSVTLTALLSLASNLRS 438

Query: 418 LDLGQQLHAY 447
            ++G+Q HAY
Sbjct: 439 QEIGKQAHAY 448



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 38/140 (27%), Positives = 69/140 (49%)
 Frame = +1

Query: 19  FRLMMDMGIKPTVVSFVNVFPAVAAVGDKNNADVLYGLVLKLGTDYVNDLFAVSSAISMY 198
           FR M++  ++P  V+  ++ PA   +G       ++G  ++   +   ++F  ++ + MY
Sbjct: 513 FRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLN--QNVFVGTALLDMY 570

Query: 199 SDFDDVDTARKVFDLSWERNIQVWNTMIGGYVQNDCYRDGLDLFFRVLELDKIVVPDTVT 378
           S    +  A  VF  + E+N   + TMI  Y Q+      L LF  +  L   + PD+VT
Sbjct: 571 SKSGAITYAENVFAETLEKNSVTYTTMILSYGQHGMGERALSLFHAM--LGSGIKPDSVT 628

Query: 379 FLASLTAVSQLQWLDLGQQL 438
           F+A L+A S    +D G ++
Sbjct: 629 FVAILSACSYAGLVDEGLRI 648


>ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic [Vitis vinifera]
          Length = 825

 Score =  186 bits (472), Expect = 2e-45
 Identities = 92/148 (62%), Positives = 119/148 (80%)
 Frame = +1

Query: 4   KALMQFRLMMDMGIKPTVVSFVNVFPAVAAVGDKNNADVLYGLVLKLGTDYVNDLFAVSS 183
           +A   FR MM MGI+PT VSFVNVFPAV  + D +NA+VLYGLV+KLG+D+V+D F VSS
Sbjct: 201 EAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMSDYDNANVLYGLVVKLGSDFVDDFFVVSS 260

Query: 184 AISMYSDFDDVDTARKVFDLSWERNIQVWNTMIGGYVQNDCYRDGLDLFFRVLELDKIVV 363
           AI MY++   VD AR++FD   ERN +VWNTMIGGYVQN+C  + +DLF +V+E ++ V+
Sbjct: 261 AIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVL 320

Query: 364 PDTVTFLASLTAVSQLQWLDLGQQLHAY 447
            D VTFL++LTA+SQLQWL+LG+QLHAY
Sbjct: 321 -DDVTFLSALTAISQLQWLELGRQLHAY 347



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 41/130 (31%), Positives = 70/130 (53%)
 Frame = +1

Query: 58  VSFVNVFPAVAAVGDKNNADVLYGLVLKLGTDYVNDLFAVSSAISMYSDFDDVDTARKVF 237
           V+F++   A++ +        L+  +LK  T  +  +  +++ I MYS    + T+ KVF
Sbjct: 323 VTFLSALTAISQLQWLELGRQLHAYILKSST--ILQVVILNAIIVMYSRCGSIGTSFKVF 380

Query: 238 DLSWERNIQVWNTMIGGYVQNDCYRDGLDLFFRVLELDKIVVPDTVTFLASLTAVSQLQW 417
               ER++  WNTM+  +VQN    +GL L F + +   +V  D+VT  A L+  S L+ 
Sbjct: 381 SNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQKQGFMV--DSVTLTALLSLASNLRS 438

Query: 418 LDLGQQLHAY 447
            ++G+Q HAY
Sbjct: 439 QEIGKQAHAY 448



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 38/140 (27%), Positives = 69/140 (49%)
 Frame = +1

Query: 19  FRLMMDMGIKPTVVSFVNVFPAVAAVGDKNNADVLYGLVLKLGTDYVNDLFAVSSAISMY 198
           FR M++  ++P  V+  ++ PA   +G       ++G  ++   +   ++F  ++ + MY
Sbjct: 513 FRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLN--RNVFVGTALLDMY 570

Query: 199 SDFDDVDTARKVFDLSWERNIQVWNTMIGGYVQNDCYRDGLDLFFRVLELDKIVVPDTVT 378
           S    +  A  VF  + E+N   + TMI  Y Q+      L LF  +  L   + PD+VT
Sbjct: 571 SKSGAITYAENVFAETLEKNSVTYTTMISSYGQHGMGERALSLFHAM--LGSGIKPDSVT 628

Query: 379 FLASLTAVSQLQWLDLGQQL 438
           F+A L+A S    +D G ++
Sbjct: 629 FVAILSACSYAGLVDEGLRI 648


>ref|XP_002520572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540232|gb|EEF41805.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 695

 Score =  177 bits (448), Expect = 1e-42
 Identities = 86/148 (58%), Positives = 118/148 (79%)
 Frame = +1

Query: 4   KALMQFRLMMDMGIKPTVVSFVNVFPAVAAVGDKNNADVLYGLVLKLGTDYVNDLFAVSS 183
           +A+ QFRLMM  GIKP+ VSFVNVFPA+++VGD  NA+VLYG++LKLG +Y NDLF VSS
Sbjct: 83  EAIRQFRLMMKWGIKPSPVSFVNVFPAISSVGDFKNANVLYGMLLKLGNEYANDLFVVSS 142

Query: 184 AISMYSDFDDVDTARKVFDLSWERNIQVWNTMIGGYVQNDCYRDGLDLFFRVLELDKIVV 363
           AISMY++   +D  RKVFD   E++ +VWNTMIGG++QN+ + +G+ LF + ++ +  ++
Sbjct: 143 AISMYAELGCLDLCRKVFDSCLEKSAEVWNTMIGGHIQNNSFLEGVYLFLQAMKTEHTIL 202

Query: 364 PDTVTFLASLTAVSQLQWLDLGQQLHAY 447
            D VTFL++LTAVSQLQ L LGQQ+HA+
Sbjct: 203 -DDVTFLSALTAVSQLQCLGLGQQMHAF 229



 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 44/145 (30%), Positives = 79/145 (54%)
 Frame = +1

Query: 4   KALMQFRLMMDMGIKPTVVSFVNVFPAVAAVGDKNNADVLYGLVLKLGTDYVNDLFAVSS 183
           +A + FRLM++  ++P  V+  ++ PA +++G  N    L+G+ ++   D   ++F  ++
Sbjct: 390 QAFITFRLMLEQNLRPNAVTLASILPACSSLGSINLGKQLHGVSIRYSLD--QNIFVRTA 447

Query: 184 AISMYSDFDDVDTARKVFDLSWERNIQVWNTMIGGYVQNDCYRDGLDLFFRVLELDKIVV 363
            + MYS    ++ A  VF  S ERN   + TMI GY Q+    + L LF  + +    + 
Sbjct: 448 LVDMYSKSGAINYAESVFTQSSERNSVTYTTMILGYGQHGMGENALSLFHSMKKSG--IQ 505

Query: 364 PDTVTFLASLTAVSQLQWLDLGQQL 438
           PD +TF+A L+A S    +D G ++
Sbjct: 506 PDAITFVAVLSACSYAGLVDEGLRI 530



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 38/130 (29%), Positives = 73/130 (56%)
 Frame = +1

Query: 58  VSFVNVFPAVAAVGDKNNADVLYGLVLKLGTDYVNDLFAVSSAISMYSDFDDVDTARKVF 237
           V+F++   AV+ +        ++   +K  T  V  +  +++ + MYS  + V T+ +VF
Sbjct: 205 VTFLSALTAVSQLQCLGLGQQMHAFTMKNHT--VLSVTVLNAILVMYSRCNSVQTSFEVF 262

Query: 238 DLSWERNIQVWNTMIGGYVQNDCYRDGLDLFFRVLELDKIVVPDTVTFLASLTAVSQLQW 417
           +   E+++  WNTMI G++QN    +GL L + + +  +  + D+VT  + L+A S L+ 
Sbjct: 263 EKMPEKDVVSWNTMISGFIQNGLDEEGLMLVYEMQK--QGFIADSVTVTSLLSAASNLRN 320

Query: 418 LDLGQQLHAY 447
            ++G+Q HAY
Sbjct: 321 REIGKQTHAY 330


>ref|XP_002308773.1| predicted protein [Populus trichocarpa] gi|222854749|gb|EEE92296.1|
           predicted protein [Populus trichocarpa]
          Length = 465

 Score =  173 bits (439), Expect = 1e-41
 Identities = 86/148 (58%), Positives = 116/148 (78%)
 Frame = +1

Query: 4   KALMQFRLMMDMGIKPTVVSFVNVFPAVAAVGDKNNADVLYGLVLKLGTDYVNDLFAVSS 183
           +A+  FRL+M MGIKP+ VSFVNVFPA ++V D  NA+ LYG+++K+G++YVNDLF VSS
Sbjct: 206 EAIRLFRLVMKMGIKPSPVSFVNVFPAFSSVEDFKNANALYGMLVKMGSEYVNDLFVVSS 265

Query: 184 AISMYSDFDDVDTARKVFDLSWERNIQVWNTMIGGYVQNDCYRDGLDLFFRVLELDKIVV 363
           AI M+++   +D ARKVFD   E+N ++WNTMIGGYVQN+   +G+DLF + +E ++ V+
Sbjct: 266 AIFMFAELGHIDFARKVFDHCLEKNTEIWNTMIGGYVQNNLLIEGIDLFLKAVETEQTVL 325

Query: 364 PDTVTFLASLTAVSQLQWLDLGQQLHAY 447
            D VTFL+ LTAVSQLQ LDL QQ HA+
Sbjct: 326 -DDVTFLSVLTAVSQLQCLDLAQQQHAF 352



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 42/130 (32%), Positives = 72/130 (55%)
 Frame = +1

Query: 58  VSFVNVFPAVAAVGDKNNADVLYGLVLKLGTDYVNDLFAVSSAISMYSDFDDVDTARKVF 237
           V+F++V  AV+ +   + A   +  V+K     V  +   ++ I MYS  + V T+ +VF
Sbjct: 328 VTFLSVLTAVSQLQCLDLAQQQHAFVIK--NLAVFPVMITNAIIVMYSRCNSVHTSFEVF 385

Query: 238 DLSWERNIQVWNTMIGGYVQNDCYRDGLDLFFRVLELDKIVVPDTVTFLASLTAVSQLQW 417
           +   ER++  WNTMI  +VQN    +GL L + + +    +  D+VT  A L+A S L+ 
Sbjct: 386 EKMVERDVVSWNTMISAFVQNGMDDEGLMLVYEMQKQGFAI--DSVTVTALLSAASNLRS 443

Query: 418 LDLGQQLHAY 447
            ++G+Q +AY
Sbjct: 444 QEIGKQTYAY 453


>ref|XP_002883344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297329184|gb|EFH59603.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 824

 Score =  160 bits (404), Expect = 1e-37
 Identities = 82/149 (55%), Positives = 108/149 (72%)
 Frame = +1

Query: 1   SKALMQFRLMMDMGIKPTVVSFVNVFPAVAAVGDKNNADVLYGLVLKLGTDYVNDLFAVS 180
           ++A  QF +MM M IKP+ VSFVNVFPAVA       A+V YGL+LKLG +YV DLF VS
Sbjct: 200 AEACRQFAIMMRMEIKPSPVSFVNVFPAVATSRSIKKANVFYGLMLKLGDEYVKDLFVVS 259

Query: 181 SAISMYSDFDDVDTARKVFDLSWERNIQVWNTMIGGYVQNDCYRDGLDLFFRVLELDKIV 360
           SAISMY++  D++++R+VFD   ERNI+VWNTMIG YVQNDC  + ++LF   +   K +
Sbjct: 260 SAISMYAELGDLESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIG-SKEI 318

Query: 361 VPDTVTFLASLTAVSQLQWLDLGQQLHAY 447
           V D VTFL + +AVS LQ ++LG+Q H +
Sbjct: 319 VSDEVTFLLAASAVSGLQQVELGRQFHGF 347



 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 42/145 (28%), Positives = 73/145 (50%)
 Frame = +1

Query: 4   KALMQFRLMMDMGIKPTVVSFVNVFPAVAAVGDKNNADVLYGLVLKLGTDYVNDLFAVSS 183
           +  + FR M++  I+P  V+  ++ PA + VG  +    L+G  ++   D   ++F  S+
Sbjct: 508 ETFLVFRKMLEQNIRPNAVTVASILPACSQVGSVDLGKQLHGFSIRQYLD--QNVFVASA 565

Query: 184 AISMYSDFDDVDTARKVFDLSWERNIQVWNTMIGGYVQNDCYRDGLDLFFRVLELDKIVV 363
            + MYS    +  A  +F  + ERN   + TMI GY Q+      + LF  + EL   + 
Sbjct: 566 LVDMYSKAGAIKYAENMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQELG--IK 623

Query: 364 PDTVTFLASLTAVSQLQWLDLGQQL 438
           PD + F+A L+A S    +D G ++
Sbjct: 624 PDAIAFVAVLSACSYSGLVDEGLKI 648



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 2/150 (1%)
 Frame = +1

Query: 4   KALMQFRLMMDMGIKPTVVSFVNVFPAVAAVGDKNNADVLYGLVLKLGTDYVNDLFAVSS 183
           + LM    M   G K   ++   +  A + + +K      +G +++ G  +       S 
Sbjct: 406 EGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHGFLIRQGIQFEG---MNSY 462

Query: 184 AISMYSDFDDVDTARKVFDLSW--ERNIQVWNTMIGGYVQNDCYRDGLDLFFRVLELDKI 357
            I MY+    +  ++K+F+ S   ER+   WN+MI GY QN    +   +F ++LE +  
Sbjct: 463 LIDMYAKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEETFLVFRKMLEQN-- 520

Query: 358 VVPDTVTFLASLTAVSQLQWLDLGQQLHAY 447
           + P+ VT  + L A SQ+  +DLG+QLH +
Sbjct: 521 IRPNAVTVASILPACSQVGSVDLGKQLHGF 550