BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00034262
         (634 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003588352.1| NADH dehydrogenase subunit [Medicago truncat...   218   7e-55
emb|CAN64512.1| hypothetical protein VITISV_004351 [Vitis vinifera]   218   1e-54
ref|XP_004153848.1| PREDICTED: LOW QUALITY PROTEIN: NADH-ubiquin...   194   1e-47
ref|NP_064003.1| orf300 gene product (mitochondrion) [Beta vulga...   181   1e-43
sp|P15688.2|NU2M_BETVU RecName: Full=NADH-ubiquinone oxidoreduct...   181   1e-43

>ref|XP_003588352.1| NADH dehydrogenase subunit [Medicago truncatula]
            gi|355477400|gb|AES58603.1| NADH dehydrogenase subunit
            [Medicago truncatula]
          Length = 1094

 Score =  218 bits (555), Expect = 7e-55
 Identities = 126/205 (61%), Positives = 130/205 (63%)
 Frame = +1

Query: 1    GFCSKFYLFFAALGCGAYFLASVGVVTSVIGCWAAGRLP*VS*FGGPKAVLRAPDT*LTE 180
            GFCSKFYLFFAALGCGAYFLA VGVVTSVIGCWAAGRLP VS FGGPKAVLRAPDT    
Sbjct: 673  GFCSKFYLFFAALGCGAYFLAPVGVVTSVIGCWAAGRLPRVSQFGGPKAVLRAPDT---- 728

Query: 181  SVATRMGMHATKEKVESDTSTVYSISLYESTITTRDEPWFGELKLALGVIGLPVTARDRI 360
                          VES+TSTVYSISLYESTITTRDEPWFGELK ALGV       +   
Sbjct: 729  --------------VESETSTVYSISLYESTITTRDEPWFGELKFALGV------KKRTP 768

Query: 361  LRCSPPVVGTTRAGPRFRKMKGQRLQIPHLIGGRKTNRHLDVIQPFLF*LGKNGEVHPNR 540
              C+        AG      +G      H   GRKTNRHLDVIQPFLF LGKNGEVHPNR
Sbjct: 769  SYCARSYTEVLPAGCWNDASRGVNNSPSH--WGRKTNRHLDVIQPFLFLLGKNGEVHPNR 826

Query: 541  PMXXXXXXXXXXXXXXXXNGHGEKK 615
            PM                 GHGEKK
Sbjct: 827  PMKNKRRAKRQWRAKRMRKGHGEKK 851


>emb|CAN64512.1| hypothetical protein VITISV_004351 [Vitis vinifera]
          Length = 282

 Score =  218 bits (554), Expect = 1e-54
 Identities = 113/135 (83%), Positives = 115/135 (85%)
 Frame = +1

Query: 1   GFCSKFYLFFAALGCGAYFLASVGVVTSVIGCWAAGRLP*VS*FGGPKAVLRAPDT*LTE 180
           GFCSKFYLFFAALGCGAYFLA VGVVTSVIG WAAGRLP                  LTE
Sbjct: 159 GFCSKFYLFFAALGCGAYFLAPVGVVTSVIGRWAAGRLPR-----------------LTE 201

Query: 181 SVATRMGMHATKEKVESDTSTVYSISLYESTITTRDEPWFGELKLALGVIGLPVTARDRI 360
           SVATRMGMHATK++VESDTSTVYSISLYESTITTRDEPWFGELKLALGVIGLPVTARDRI
Sbjct: 202 SVATRMGMHATKDRVESDTSTVYSISLYESTITTRDEPWFGELKLALGVIGLPVTARDRI 261

Query: 361 LRCSPPVVGTTRAGP 405
           LRCSPPVVGTTRAGP
Sbjct: 262 LRCSPPVVGTTRAGP 276


>ref|XP_004153848.1| PREDICTED: LOW QUALITY PROTEIN: NADH-ubiquinone oxidoreductase
           chain 2-like, partial [Cucumis sativus]
          Length = 472

 Score =  194 bits (492), Expect = 1e-47
 Identities = 117/184 (63%), Positives = 119/184 (64%), Gaps = 2/184 (1%)
 Frame = +1

Query: 1   GFCSKFYLFFAALGCGAYFLASVGVVTSVIGCWAAGRLP*VS*FGGPKAVLRAPDT*LTE 180
           GFCSKFYLFFAALGCGAYFLA VGVVTSVIG WAAGRLP VS FG PKAVLRAPDT    
Sbjct: 252 GFCSKFYLFFAALGCGAYFLAPVGVVTSVIGRWAAGRLPRVSLFGRPKAVLRAPDT---- 307

Query: 181 SVATRMGMHATKEKVESDTSTVYSISLYESTITTRDEPWFGELKLA--LGVIGLPVTARD 354
                         VESDTSTVYSISLYESTITTRDEPWFGELKLA   GV   P     
Sbjct: 308 --------------VESDTSTVYSISLYESTITTRDEPWFGELKLAPRSGVXRTP----- 348

Query: 355 RILRCSPPVVGTTRAGPRFRKMKGQRLQIPHLIGGRKTNRHLDVIQPFLF*LGKNGEVHP 534
               C+        AG      +G      H   GRKTNRHLDV QP  F LGKNGEVHP
Sbjct: 349 --SYCARSYTEVLPAGCWNDASRGVTNSPSH--WGRKTNRHLDVRQPLKFELGKNGEVHP 404

Query: 535 NRPM 546
           NRPM
Sbjct: 405 NRPM 408


>ref|NP_064003.1| orf300 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]
           gi|323435152|ref|YP_004222370.1| hypothetical protein
           BevumaM_p137 [Beta vulgaris subsp. maritima]
           gi|346683243|ref|YP_004842175.1| hypothetical protein
           BemaM_p131 [Beta macrocarpa] gi|9049305|dbj|BAA99315.1|
           orf300 [Beta vulgaris subsp. vulgaris]
           gi|317905602|emb|CBJ14009.1| hypothetical protein [Beta
           vulgaris subsp. maritima] gi|319439885|emb|CBJ17585.1|
           hypothetical protein [Beta vulgaris subsp. maritima]
           gi|320148039|emb|CBJ20703.1| hypothetical protein [Beta
           vulgaris subsp. maritima] gi|345500161|emb|CBX24980.1|
           hypothetical protein [Beta macrocarpa]
           gi|384977913|emb|CBL54137.1| hypothetical protein
           (mitochondrion) [Beta vulgaris subsp. maritima]
          Length = 300

 Score =  181 bits (459), Expect = 1e-43
 Identities = 98/138 (71%), Positives = 103/138 (74%), Gaps = 3/138 (2%)
 Frame = +1

Query: 1   GFCSKFYLFFAALGCGAYFLASVGVVTSVIGCWAAGRLP*VS*FGGPKAVLRAPDT*LTE 180
           GFCSKFYLFFAALGCGAYFLA VGVVTSVIGCWAAGRLP VS FG  +         L  
Sbjct: 159 GFCSKFYLFFAALGCGAYFLAPVGVVTSVIGCWAAGRLPRVSQFGDRRQFSVHRTRSLPN 218

Query: 181 SVATRMGMHATKEKVESDT---STVYSISLYESTITTRDEPWFGELKLALGVIGLPVTAR 351
            +  R G      K+ S      +VYSISLYESTITTRDEPWFGE +LALGVIGLPVTA 
Sbjct: 219 QL--RHGWECMLRKIGSSLIHQPSVYSISLYESTITTRDEPWFGEFELALGVIGLPVTAH 276

Query: 352 DRILRCSPPVVGTTRAGP 405
           DRILRCSPPVVGTTRAGP
Sbjct: 277 DRILRCSPPVVGTTRAGP 294


>sp|P15688.2|NU2M_BETVU RecName: Full=NADH-ubiquinone oxidoreductase chain 2; AltName:
           Full=NADH dehydrogenase subunit 2
           gi|12822|emb|CAA34728.1| NADH:ubiquinone reductase
           subunit 2 [Beta vulgaris subsp. vulgaris]
          Length = 515

 Score =  181 bits (459), Expect = 1e-43
 Identities = 98/138 (71%), Positives = 103/138 (74%), Gaps = 3/138 (2%)
 Frame = +1

Query: 1   GFCSKFYLFFAALGCGAYFLASVGVVTSVIGCWAAGRLP*VS*FGGPKAVLRAPDT*LTE 180
           GFCSKFYLFFAALGCGAYFLA VGVVTSVIGCWAAGRLP VS FG  +         L  
Sbjct: 374 GFCSKFYLFFAALGCGAYFLAPVGVVTSVIGCWAAGRLPRVSQFGDRRQFSVHRTRSLPN 433

Query: 181 SVATRMGMHATKEKVESDT---STVYSISLYESTITTRDEPWFGELKLALGVIGLPVTAR 351
            +  R G      K+ S      +VYSISLYESTITTRDEPWFGE +LALGVIGLPVTA 
Sbjct: 434 QL--RHGWECMLRKIGSSLIHQPSVYSISLYESTITTRDEPWFGEFELALGVIGLPVTAH 491

Query: 352 DRILRCSPPVVGTTRAGP 405
           DRILRCSPPVVGTTRAGP
Sbjct: 492 DRILRCSPPVVGTTRAGP 509