BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00034229
         (601 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEV41134.1| D2/4-type cyclin [Populus x canadensis]                134   1e-29
ref|XP_002306546.1| predicted protein [Populus trichocarpa] gi|2...   131   8e-29
emb|CAN88855.1| D2/4-type cyclin [Populus trichocarpa]                131   8e-29
ref|XP_002514014.1| cyclin d, putative [Ricinus communis] gi|223...   131   1e-28
ref|XP_003634482.1| PREDICTED: LOW QUALITY PROTEIN: cyclin-D4-2-...   126   3e-27

>gb|AEV41134.1| D2/4-type cyclin [Populus x canadensis]
          Length = 353

 Score =  134 bits (337), Expect = 1e-29
 Identities = 68/134 (50%), Positives = 91/134 (67%), Gaps = 3/134 (2%)
 Frame = +1

Query: 208 SLLCPENSNVCFDDEIGNGFLEEQWNP---HKLDKKINFFHSGDFFQLGNLPLQSEECMS 378
           +LLC E++N  FDD        E++     H   +  N    GD    G LP+QS+EC+ 
Sbjct: 11  NLLCAEDNNSIFDDNDHYDATVEEFEATWHHGNHQICNQNGGGDG---GCLPMQSDECLV 67

Query: 379 LIVEKECDFLPRSDYLKRLQNGDLDLMVRKDALDWMKKVHSYYSFGPLTAYLSISYFDRF 558
           L+VEKEC  LP  DYLKRL+NGDLD+  RK+A+DW+ KVH+++ FGPL AYLSI+Y DRF
Sbjct: 68  LMVEKECQHLPNGDYLKRLRNGDLDMGARKEAVDWIAKVHAHFGFGPLCAYLSINYLDRF 127

Query: 559 LSNYELPSGRAWVV 600
           LS YELP+G+ W++
Sbjct: 128 LSAYELPNGKPWMM 141


>ref|XP_002306546.1| predicted protein [Populus trichocarpa] gi|222855995|gb|EEE93542.1|
           predicted protein [Populus trichocarpa]
          Length = 337

 Score =  131 bits (330), Expect = 8e-29
 Identities = 68/133 (51%), Positives = 91/133 (68%), Gaps = 2/133 (1%)
 Frame = +1

Query: 208 SLLCPENSNVCFDDEIGNGFLEEQWNP--HKLDKKINFFHSGDFFQLGNLPLQSEECMSL 381
           SLLC E++N  FDD        E++    H  + +I   +SG +     LP+QSEEC+ L
Sbjct: 11  SLLCAEDNNSIFDDNDCYDATVEEFEATWHHGNHQIQNQNSGWW-----LPMQSEECLVL 65

Query: 382 IVEKECDFLPRSDYLKRLQNGDLDLMVRKDALDWMKKVHSYYSFGPLTAYLSISYFDRFL 561
           +VEKEC  LP  DYLKRL+NGDL L  RK+A+DW+ KV++++ FGPL AYLS++Y DRFL
Sbjct: 66  MVEKECQHLPSGDYLKRLRNGDLGLGARKEAVDWIAKVNAHFGFGPLCAYLSVNYLDRFL 125

Query: 562 SNYELPSGRAWVV 600
           S YELP G AW++
Sbjct: 126 SAYELPKGNAWMM 138


>emb|CAN88855.1| D2/4-type cyclin [Populus trichocarpa]
          Length = 319

 Score =  131 bits (330), Expect = 8e-29
 Identities = 68/133 (51%), Positives = 91/133 (68%), Gaps = 2/133 (1%)
 Frame = +1

Query: 208 SLLCPENSNVCFDDEIGNGFLEEQWNP--HKLDKKINFFHSGDFFQLGNLPLQSEECMSL 381
           SLLC E++N  FDD        E++    H  + +I   +SG +     LP+QSEEC+ L
Sbjct: 11  SLLCAEDNNSIFDDNDCYDATVEEFEATWHHGNHQIQNQNSGWW-----LPMQSEECLVL 65

Query: 382 IVEKECDFLPRSDYLKRLQNGDLDLMVRKDALDWMKKVHSYYSFGPLTAYLSISYFDRFL 561
           +VEKEC  LP  DYLKRL+NGDL L  RK+A+DW+ KV++++ FGPL AYLS++Y DRFL
Sbjct: 66  MVEKECQHLPSGDYLKRLRNGDLGLGARKEAVDWIAKVNAHFGFGPLCAYLSVNYLDRFL 125

Query: 562 SNYELPSGRAWVV 600
           S YELP G AW++
Sbjct: 126 SAYELPKGNAWMM 138


>ref|XP_002514014.1| cyclin d, putative [Ricinus communis] gi|223547100|gb|EEF48597.1|
           cyclin d, putative [Ricinus communis]
          Length = 354

 Score =  131 bits (329), Expect = 1e-28
 Identities = 68/139 (48%), Positives = 93/139 (66%), Gaps = 8/139 (5%)
 Frame = +1

Query: 208 SLLCPENSNVCFDDEIGNGF--------LEEQWNPHKLDKKINFFHSGDFFQLGNLPLQS 363
           SLLC E++   FDD+    +         E  W  H  + +IN  H    F + +LP+ S
Sbjct: 11  SLLCAEDNISIFDDDNNKDYCYGDVVDEFEGSW--HHGNHRIN--HQDRGFDV-SLPMLS 65

Query: 364 EECMSLIVEKECDFLPRSDYLKRLQNGDLDLMVRKDALDWMKKVHSYYSFGPLTAYLSIS 543
           EEC+ L+VEKEC  LP +DYLKRL+ G+LDL  RK+A+DW+ KVH+++ FGPL+AYLSI+
Sbjct: 66  EECLRLMVEKECQHLPNADYLKRLRRGELDLGARKEAIDWIGKVHAHFGFGPLSAYLSIN 125

Query: 544 YFDRFLSNYELPSGRAWVV 600
           Y DRFLS YELP G+ W++
Sbjct: 126 YLDRFLSAYELPKGKDWMM 144


>ref|XP_003634482.1| PREDICTED: LOW QUALITY PROTEIN: cyclin-D4-2-like [Vitis vinifera]
          Length = 325

 Score =  126 bits (316), Expect = 3e-27
 Identities = 63/135 (46%), Positives = 91/135 (67%), Gaps = 5/135 (3%)
 Frame = +1

Query: 208 SLLCPENSNVCFDDEIGNGFLEE---QWNP--HKLDKKINFFHSGDFFQLGNLPLQSEEC 372
           SLLC E+++  FDD       EE    W+   H+   +   F+ G+F  L  LP+QS+EC
Sbjct: 11  SLLCGEDNSSIFDDADYGAAAEEFETAWHHQNHRSRNQEKSFNGGEF--LIGLPVQSDEC 68

Query: 373 MSLIVEKECDFLPRSDYLKRLQNGDLDLMVRKDALDWMKKVHSYYSFGPLTAYLSISYFD 552
           ++L++EKE   LP +DYL RL++GDLD+  R+D + W+ K H+++ FGPL AYL+I+Y D
Sbjct: 69  LALMIEKESQHLPAADYLMRLRSGDLDIGSRQDVVGWIAKAHAHFGFGPLCAYLAINYLD 128

Query: 553 RFLSNYELPSGRAWV 597
           RFLS YELP G+AW+
Sbjct: 129 RFLSTYELPKGKAWM 143