BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00034158
         (232 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACD63089.1| RNA polymerase II largest subunit [Persea americana]    88   5e-31
ref|XP_003055604.1| predicted protein [Micromonas pusilla CCMP15...    88   7e-31
emb|CAA36735.1| DNA-directed RNA polymerase [Arabidopsis thaliana]     87   1e-30
emb|CAA37130.1| RNA polymerase II [Arabidopsis thaliana]               87   1e-30
emb|CAA21466.2| DNA-directed RNA polymerase (EC 2.7.7.6) II larg...    87   1e-30

>gb|ACD63089.1| RNA polymerase II largest subunit [Persea americana]
          Length = 1009

 Score = 88.2 bits (217), Expect(2) = 5e-31
 Identities = 38/43 (88%), Positives = 42/43 (97%)
 Frame = +3

Query: 3   NVEGKRIPYGFNGRSLPHFTKDDYGPESRGFVENSYLQGLSPR 131
           NVEGKRIPYGFNGR+LPHFTKDDYGPE RGFVENSYL+GL+P+
Sbjct: 705 NVEGKRIPYGFNGRTLPHFTKDDYGPEXRGFVENSYLRGLTPQ 747



 Score = 71.2 bits (173), Expect(2) = 5e-31
 Identities = 34/34 (100%), Positives = 34/34 (100%)
 Frame = +1

Query: 130 EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 231
           EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM
Sbjct: 748 EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 781


>ref|XP_003055604.1| predicted protein [Micromonas pusilla CCMP1545]
           gi|226463578|gb|EEH60856.1| predicted protein
           [Micromonas pusilla CCMP1545]
          Length = 1694

 Score = 87.8 bits (216), Expect(2) = 7e-31
 Identities = 38/43 (88%), Positives = 43/43 (100%)
 Frame = +3

Query: 3   NVEGKRIPYGFNGRSLPHFTKDDYGPESRGFVENSYLQGLSPR 131
           NVEGKRIP+GF+GRSLPHFTKDDYGPESRGFVENSYL+GL+P+
Sbjct: 767 NVEGKRIPFGFDGRSLPHFTKDDYGPESRGFVENSYLRGLTPQ 809



 Score = 71.2 bits (173), Expect(2) = 7e-31
 Identities = 34/34 (100%), Positives = 34/34 (100%)
 Frame = +1

Query: 130 EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 231
           EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM
Sbjct: 810 EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 843


>emb|CAA36735.1| DNA-directed RNA polymerase [Arabidopsis thaliana]
          Length = 1860

 Score = 86.7 bits (213), Expect(2) = 1e-30
 Identities = 37/43 (86%), Positives = 43/43 (100%)
 Frame = +3

Query: 3   NVEGKRIPYGFNGRSLPHFTKDDYGPESRGFVENSYLQGLSPR 131
           NVEGKRIP+GF+GR+LPHFTKDDYGPESRGFVENSYL+GL+P+
Sbjct: 809 NVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQ 851



 Score = 71.2 bits (173), Expect(2) = 1e-30
 Identities = 34/34 (100%), Positives = 34/34 (100%)
 Frame = +1

Query: 130 EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 231
           EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM
Sbjct: 852 EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 885


>emb|CAA37130.1| RNA polymerase II [Arabidopsis thaliana]
          Length = 1841

 Score = 86.7 bits (213), Expect(2) = 1e-30
 Identities = 37/43 (86%), Positives = 43/43 (100%)
 Frame = +3

Query: 3   NVEGKRIPYGFNGRSLPHFTKDDYGPESRGFVENSYLQGLSPR 131
           NVEGKRIP+GF+GR+LPHFTKDDYGPESRGFVENSYL+GL+P+
Sbjct: 783 NVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQ 825



 Score = 71.2 bits (173), Expect(2) = 1e-30
 Identities = 34/34 (100%), Positives = 34/34 (100%)
 Frame = +1

Query: 130 EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 231
           EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM
Sbjct: 826 EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 859


>emb|CAA21466.2| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
           [Arabidopsis thaliana] gi|7270532|emb|CAB81489.1|
           DNA-directed RNA polymerase (EC 2.7.7.6) II largest
           chain [Arabidopsis thaliana]
          Length = 1840

 Score = 86.7 bits (213), Expect(2) = 1e-30
 Identities = 37/43 (86%), Positives = 43/43 (100%)
 Frame = +3

Query: 3   NVEGKRIPYGFNGRSLPHFTKDDYGPESRGFVENSYLQGLSPR 131
           NVEGKRIP+GF+GR+LPHFTKDDYGPESRGFVENSYL+GL+P+
Sbjct: 789 NVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQ 831



 Score = 71.2 bits (173), Expect(2) = 1e-30
 Identities = 34/34 (100%), Positives = 34/34 (100%)
 Frame = +1

Query: 130 EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 231
           EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM
Sbjct: 832 EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 865