BLASTX nr result

ID: Coptis25_contig00034154 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00034154
         (480 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCH50966.1| T4.5 [Malus x robusta]                                 83   3e-14
emb|CAN65114.1| hypothetical protein VITISV_011221 [Vitis vinifera]    71   6e-13
ref|XP_002330417.1| predicted protein [Populus trichocarpa] gi|2...    78   8e-13
emb|CAB43904.1| putative protein [Arabidopsis thaliana] gi|72697...    69   4e-12
ref|XP_002324404.1| predicted protein [Populus trichocarpa] gi|2...    71   4e-12

>emb|CCH50966.1| T4.5 [Malus x robusta]
          Length = 1670

 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 43/109 (39%), Positives = 63/109 (57%), Gaps = 3/109 (2%)
 Frame = +1

Query: 4   TI*TTN---FISIKLTKDNYILWKSLFIQVLSSFDMFGFIDGSNACPDKYIETTEENTTT 174
           TI  TN    +  KL + NYI W+SLFI VL  F + G ++G + CP  ++    + + T
Sbjct: 264 TISITNVAGMVPTKLNRQNYITWRSLFIPVLKRFKLIGLVNGEDLCPPPFVR---DPSGT 320

Query: 175 RVLNDKFLDWKNRD*QVLIWLNATISELLLPCVVGVASSFELWSVLEKR 321
            V N  F  W  RD  ++IW+N+T+S+ LLP  +G+  S  LW  LE+R
Sbjct: 321 CVPNASFETWCERDQILMIWINSTLSKDLLPLTIGMEDSRSLWQSLERR 369


>emb|CAN65114.1| hypothetical protein VITISV_011221 [Vitis vinifera]
          Length = 787

 Score = 71.2 bits (173), Expect(2) = 6e-13
 Identities = 35/99 (35%), Positives = 62/99 (62%)
 Frame = +1

Query: 19  NFISIKLTKDNYILWKSLFIQVLSSFDMFGFIDGSNACPDKYIETTEENTTTRVLNDKFL 198
           + I+IKL+  NY+LWKS  + +L S D+ G++DG+   P ++     E  T+  L+ K+L
Sbjct: 16  HMITIKLSSSNYLLWKSQLLPLLESQDLLGYVDGTLVPPPRF-----EPATSTTLSTKYL 70

Query: 199 DWKNRD*QVLIWLNATISELLLPCVVGVASSFELWSVLE 315
            WK  D ++L  L ++++E  +  VVG++++ E+W  LE
Sbjct: 71  AWKAADQRLLCLLLSSLTEEAIAAVVGLSTAREVWLALE 109



 Score = 27.3 bits (59), Expect(2) = 6e-13
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +2

Query: 341 TRSHMLQLKNTLQNIKKGSHAMVKYLQIIEETCDLL 448
           +++  L+LK+ LQ +K+G+  + +Y +  +  CD L
Sbjct: 116 SKARELRLKDDLQLMKRGTKPVAEYARTFKTLCDQL 151


>ref|XP_002330417.1| predicted protein [Populus trichocarpa] gi|222871802|gb|EEF08933.1|
           predicted protein [Populus trichocarpa]
          Length = 231

 Score = 77.8 bits (190), Expect = 8e-13
 Identities = 37/102 (36%), Positives = 59/102 (57%)
 Frame = +1

Query: 16  TNFISIKLTKDNYILWKSLFIQVLSSFDMFGFIDGSNACPDKYIETTEENTTTRVLNDKF 195
           + F+SIKL + NY LW +  + +L S ++ GF+ G+N CP ++   T+   TT V + ++
Sbjct: 16  SGFMSIKLDRTNYPLWLAQIVPILKSKNLMGFVTGTNPCPPEFKSNTDGTITTEV-DPRY 74

Query: 196 LDWKNRD*QVLIWLNATISELLLPCVVGVASSFELWSVLEKR 321
             W  +D  +L W+N ++S  +L  V    SS   WS LEKR
Sbjct: 75  ATWHQQDQMILSWINNSLSPTVLSTVARFTSSQATWSSLEKR 116


>emb|CAB43904.1| putative protein [Arabidopsis thaliana] gi|7269745|emb|CAB81478.1|
           putative protein [Arabidopsis thaliana]
          Length = 1415

 Score = 68.9 bits (167), Expect(2) = 4e-12
 Identities = 33/102 (32%), Positives = 57/102 (55%)
 Frame = +1

Query: 16  TNFISIKLTKDNYILWKSLFIQVLSSFDMFGFIDGSNACPDKYIETTEENTTTRVLNDKF 195
           ++++++KL+  NY+LWK  F   L++  + GF+ G+N CP+        +  T   N  F
Sbjct: 14  SHYVTLKLSTANYLLWKIQFETWLNNQRLLGFVTGANPCPNATRSIRNGDQVTEATNPDF 73

Query: 196 LDWKNRD*QVLIWLNATISELLLPCVVGVASSFELWSVLEKR 321
           L W   D +++ WL  ++SE  L  V G+ +S E+W  L K+
Sbjct: 74  LTWVQNDQKIMGWLLGSLSEDALRSVYGLHTSREVWFSLAKK 115



 Score = 26.9 bits (58), Expect(2) = 4e-12
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 338 VTRSHMLQLKNTLQNIKKGSHAMVKYLQIIEETCDLL 448
           V+ S    L+  L  + K   +M++YL  +++ CD L
Sbjct: 119 VSASRKSDLQRRLNPVSKNEKSMLEYLNCVKQICDQL 155


>ref|XP_002324404.1| predicted protein [Populus trichocarpa] gi|222865838|gb|EEF02969.1|
           predicted protein [Populus trichocarpa]
          Length = 344

 Score = 70.9 bits (172), Expect(2) = 4e-12
 Identities = 35/100 (35%), Positives = 55/100 (55%)
 Frame = +1

Query: 16  TNFISIKLTKDNYILWKSLFIQVLSSFDMFGFIDGSNACPDKYIETTEENTTTRVLNDKF 195
           TNF  +KLT+DNY LW    +  L   ++FG++D S   P   + +T +  TT   N  F
Sbjct: 19  TNFNPVKLTRDNYPLWLPQIVPHLRGRNLFGYVDDSTPPPPSTVSSTIDGVTTTSPNPVF 78

Query: 196 LDWKNRD*QVLIWLNATISELLLPCVVGVASSFELWSVLE 315
           L W  +D  +L  +N+T++E +L  V+   +S   W+ LE
Sbjct: 79  LHWTKQDQIILGAINSTLTEKMLTHVIRCTTSISAWTTLE 118



 Score = 25.0 bits (53), Expect(2) = 4e-12
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 341 TRSHMLQLKNTLQNIKKGSHAMVKYLQIIEETCDLLA 451
           +R+  +Q+   L  +KKGS ++  Y Q  +   D LA
Sbjct: 125 SRARTMQVHYQLTILKKGSSSVADYFQRFQSLTDSLA 161


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