BLASTX nr result

ID: Coptis25_contig00034153 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00034153
         (351 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN82674.1| hypothetical protein VITISV_034254 [Vitis vinifera]    60   2e-07
emb|CAN71383.1| hypothetical protein VITISV_013611 [Vitis vinifera]    58   9e-07
ref|XP_002266041.1| PREDICTED: uncharacterized protein LOC100265...    55   5e-06
ref|XP_002312663.1| predicted protein [Populus trichocarpa] gi|2...    55   5e-06
emb|CAN77191.1| hypothetical protein VITISV_006389 [Vitis vinifera]    55   5e-06

>emb|CAN82674.1| hypothetical protein VITISV_034254 [Vitis vinifera]
          Length = 241

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 39/114 (34%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
 Frame = +3

Query: 30  VEEFRPPVQSQSGF------LLANFIRLRPPEFVGSSEVKVAEXXXXXXXXXXXXXXCTD 191
           V E RP +   +G       L+  F  L PP F G      AE                +
Sbjct: 26  VTEGRPVIHPVAGSECQNVSLILEFKALNPPSFRGGPNFLEAENWMKEIKKILDVMAVPE 85

Query: 192 VERVTLAAFMLRGEAKHWWISVKDV-ETFPMSWAKFEELFLLRYVTEAARDKKQ 350
             RV+LA+FMLR EA +WW  +K   +   M W +FEEL L  Y  EA R +K+
Sbjct: 86  ERRVSLASFMLRDEADNWWDMIKTTQDVTKMVWMQFEELLLSNYFPEAVRRQKR 139


>emb|CAN71383.1| hypothetical protein VITISV_013611 [Vitis vinifera]
          Length = 173

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
 Frame = +3

Query: 27  RVEEFRPPVQSQSGFLLANFIRLRPPEFVGSSEVKVAEXXXXXXXXXXXXXXCTDVERVT 206
           R    + PV SQ   ++  F+ ++PP F G    + AE                +  RV+
Sbjct: 17  RKSRSKRPVMSQIK-VMKRFMVMQPPSFNGEPNAEAAEHCLRRMKRILVGLDIPEERRVS 75

Query: 207 LAAFMLRGEAKHWWISVKDV-ETFPMSWAKFEELFLLRYVTEAARDKKQ 350
           LA +ML  +A  WW SVK V +   M+W +FE +FL +Y  E A+  K+
Sbjct: 76  LAVYMLGDKADFWWESVKKVYDIEVMTWEEFERIFLSKYCGEVAKHAKK 124


>ref|XP_002266041.1| PREDICTED: uncharacterized protein LOC100265452 [Vitis vinifera]
          Length = 429

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
 Frame = +3

Query: 48  PVQSQSGFLLANFIRLRPPEFVGSSEVKVAEXXXXXXXXXXXXXXCTDVERVTLAAFMLR 227
           PV SQ   ++  F+ ++PP F G    + AE                + +RV LAA+ML 
Sbjct: 66  PVMSQIE-VMKRFMVMQPPSFNGEPIAEAAEHWLRRIRRILVGLDIPEEKRVGLAAYMLV 124

Query: 228 GEAKHWWISVKDV-ETFPMSWAKFEELFLLRYVTEAARDKKQ 350
            +A  WW S++ V +   M+W +FE +FL +Y  E A+D K+
Sbjct: 125 DKADFWWESIEKVYDIEVMTWEEFEIIFLGKYFGEVAKDAKR 166


>ref|XP_002312663.1| predicted protein [Populus trichocarpa] gi|222852483|gb|EEE90030.1|
           predicted protein [Populus trichocarpa]
          Length = 610

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
 Frame = +3

Query: 75  LANFIRLRPPEFVGSSEVKVAEXXXXXXXXXXXXXXCTDVERVTLAAFMLRGE-AKHWWI 251
           L+ F++L PP F G    +  +              CTD   VTLA+F L GE A +W+ 
Sbjct: 77  LSEFLKLAPPTFKGVDNSEDPQQFLDAVWRRCEAMGCTDHRAVTLASFRLEGEVAVNWYE 136

Query: 252 SVKD---VETFPMSWAKFEELFLLRYVTEAARDKK 347
           S +    V + PM W +F E+FL R++ E+ R+ +
Sbjct: 137 SKRGERAVSSPPMEWKEFSEMFLERFLPESVREAR 171


>emb|CAN77191.1| hypothetical protein VITISV_006389 [Vitis vinifera]
          Length = 1387

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
 Frame = +3

Query: 48  PVQSQSGFLLANFIRLRPPEFVGSSEVKVAEXXXXXXXXXXXXXXCTDVERVTLAAFMLR 227
           PV SQ    +  F+ ++PP F G    + AE                +  RV LA +ML 
Sbjct: 44  PVMSQME-AMKRFMVMQPPSFNGEPSAEAAEHWLXRMRRILVGLDIPEERRVGLATYMLV 102

Query: 228 GEAKHWWISVKDV-ETFPMSWAKFEELFLLRYVTEAARDKKQ 350
            +A  WW S+K V +T  M+W +FE +FL +Y  E A+  K+
Sbjct: 103 DKADFWWESMKRVYDTEVMTWEEFERIFLGKYFGEVAKHAKR 144


Top