BLASTX nr result

ID: Coptis25_contig00034119 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00034119
         (429 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519623.1| conserved hypothetical protein [Ricinus comm...   117   1e-24
emb|CBI35345.3| unnamed protein product [Vitis vinifera]              114   8e-24
ref|XP_002268419.1| PREDICTED: uncharacterized protein LOC100242...   114   8e-24
ref|XP_002321345.1| predicted protein [Populus trichocarpa] gi|2...   112   4e-23
emb|CBI35346.3| unnamed protein product [Vitis vinifera]              108   6e-22

>ref|XP_002519623.1| conserved hypothetical protein [Ricinus communis]
           gi|223541213|gb|EEF42768.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 246

 Score =  117 bits (293), Expect = 1e-24
 Identities = 56/70 (80%), Positives = 59/70 (84%)
 Frame = +3

Query: 39  HLTVEYVGKAVNRGSYFWSLGLRAFYFSFPLFLWIFGPIPMFLSCLSLVSMFYFLDVTFF 218
           HLT EYV ++VNRGSYFWSLGLRAFYFSFPLFLWIFGPIPMFL CL LV M YFLDVT F
Sbjct: 161 HLTAEYVSRSVNRGSYFWSLGLRAFYFSFPLFLWIFGPIPMFLCCLVLVLMLYFLDVT-F 219

Query: 219 EVGSAVVVDD 248
           E G AV + D
Sbjct: 220 ECGWAVAISD 229


>emb|CBI35345.3| unnamed protein product [Vitis vinifera]
          Length = 262

 Score =  114 bits (285), Expect = 8e-24
 Identities = 52/65 (80%), Positives = 56/65 (86%)
 Frame = +3

Query: 21  LASKSAHLTVEYVGKAVNRGSYFWSLGLRAFYFSFPLFLWIFGPIPMFLSCLSLVSMFYF 200
           L+  S HLT EYVG  VN+GSYFWSLGLRAFYFSFPLFLWIFGPIPMFLSCL +V M YF
Sbjct: 154 LSPHSHHLTAEYVGTTVNKGSYFWSLGLRAFYFSFPLFLWIFGPIPMFLSCLVMVLMLYF 213

Query: 201 LDVTF 215
           +DVTF
Sbjct: 214 VDVTF 218


>ref|XP_002268419.1| PREDICTED: uncharacterized protein LOC100242299 [Vitis vinifera]
          Length = 239

 Score =  114 bits (285), Expect = 8e-24
 Identities = 52/65 (80%), Positives = 56/65 (86%)
 Frame = +3

Query: 21  LASKSAHLTVEYVGKAVNRGSYFWSLGLRAFYFSFPLFLWIFGPIPMFLSCLSLVSMFYF 200
           L+  S HLT EYVG  VN+GSYFWSLGLRAFYFSFPLFLWIFGPIPMFLSCL +V M YF
Sbjct: 154 LSPHSHHLTAEYVGTTVNKGSYFWSLGLRAFYFSFPLFLWIFGPIPMFLSCLVMVLMLYF 213

Query: 201 LDVTF 215
           +DVTF
Sbjct: 214 VDVTF 218


>ref|XP_002321345.1| predicted protein [Populus trichocarpa]
           gi|224151094|ref|XP_002337058.1| predicted protein
           [Populus trichocarpa] gi|222837933|gb|EEE76298.1|
           predicted protein [Populus trichocarpa]
           gi|222868341|gb|EEF05472.1| predicted protein [Populus
           trichocarpa]
          Length = 219

 Score =  112 bits (279), Expect = 4e-23
 Identities = 50/58 (86%), Positives = 54/58 (93%)
 Frame = +3

Query: 39  HLTVEYVGKAVNRGSYFWSLGLRAFYFSFPLFLWIFGPIPMFLSCLSLVSMFYFLDVT 212
           HL+ EYV ++VNRGSYFWSLGLRAFYFSFPLFLWIFGPIPMFLSC+ LVSM YFLDVT
Sbjct: 161 HLSTEYVARSVNRGSYFWSLGLRAFYFSFPLFLWIFGPIPMFLSCVFLVSMLYFLDVT 218


>emb|CBI35346.3| unnamed protein product [Vitis vinifera]
          Length = 248

 Score =  108 bits (269), Expect = 6e-22
 Identities = 50/68 (73%), Positives = 54/68 (79%)
 Frame = +3

Query: 9   KITSLASKSAHLTVEYVGKAVNRGSYFWSLGLRAFYFSFPLFLWIFGPIPMFLSCLSLVS 188
           K  SL+  S  LT EYVG  VN G YFWSLGLRAFYFS PLFLW+FGPIPMFLSCL +VS
Sbjct: 150 KKMSLSPNSHQLTAEYVGTIVNNGCYFWSLGLRAFYFSIPLFLWLFGPIPMFLSCLLMVS 209

Query: 189 MFYFLDVT 212
           M YFLD+T
Sbjct: 210 MLYFLDIT 217


Top