BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00034063
         (1249 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ...   181   5e-43
emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]   180   6e-43
ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus ...   161   3e-37
ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|2...   154   5e-35
ref|XP_002510608.1| conserved hypothetical protein [Ricinus comm...   149   1e-33

>ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
          Length = 389

 Score =  181 bits (458), Expect = 5e-43
 Identities = 135/399 (33%), Positives = 194/399 (48%), Gaps = 23/399 (5%)
 Frame = -1

Query: 1174 SDWSQLPPELTDQITARLAL-PDLIRFGYVCTTWKSR--STPVRHKGRLPWLIVPFKNSI 1004
            +DWSQL PEL D I  +  +  D +RF  VC  W++    TP     +LPWL++P   S 
Sbjct: 2    ADWSQLHPELLDFIAKKFKIYTDYVRFRAVCHNWRASVPKTPHHLPTQLPWLMLP--QSQ 59

Query: 1003 PKKASIWINSPPFYSILDNKYYKVNLPEIIDCRIC-GASNGWLMTIHENGDIQLLHPFTR 827
            P          PF+S+  NK++ + LPE    R   G+S+GWL+ + E  +I LL+P TR
Sbjct: 60   PHHTH-----RPFFSLSLNKFHFLQLPEASHRRRRRGSSHGWLLILDEAPEIFLLNPLTR 114

Query: 826  KVIDIPSLLDMPEVFRMNRSDDGTLQYLVHYLKMTTWEDATLIRDTYIQKAIIISTPQHV 647
              + +P L   P V R N +D G    L              +RD++I+K I+ S+P + 
Sbjct: 115  SKVHLPPLSTFPNVVRFNFADVGREYALRTSSGDVYTRSLKKMRDSFIKKTILSSSPANG 174

Query: 646  EVVVCIVYTR----LFFCMPEKDDEWNYVRNSDSKKLGITGYIDVTYCRGKLYTVIFDGS 479
               + +V       L  C  + DD W ++ ++ S         DV + RG  Y V   GS
Sbjct: 175  SDFIAVVILNQTGDLALCR-KSDDSWTFLEDAQSYAE------DVIFHRGLFYAVNKYGS 227

Query: 478  LFVVEGLEGPTPVTKMLICDEGYHYGRGELNLVESSGELLKIKAIRDERKT--------- 326
            + V + + G +P  ++ I +    +G     LVES  ELL +    D             
Sbjct: 228  IAVCD-VSGSSP--RVSIIEMPQQFGGDLQYLVESGEELLLVTRYLDLTYDVEPDQTSLI 284

Query: 325  --TLSFKVSELDFEECKWVEVNDLGDRAIFLGFNYSFSLSTSDFPSCVRNCIYFTDPSVV 152
              T  F+V  LD +  +W  V+ LGDRA+FLG N S SLS+ DFP C  NCIY+TD    
Sbjct: 285  YRTTRFQVCRLDLKAPRWEVVSSLGDRALFLGENLSLSLSSVDFPGCKGNCIYYTDDYSE 344

Query: 151  ENRGG----YDLHIYNLEDGTIETIFLDDSASVWEEPIW 47
            +N  G     DL I+NLEDG+IE +        W  P+W
Sbjct: 345  DNYDGIGGEQDLGIFNLEDGSIEPLPCSHFRIRWPPPLW 383


>emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]
          Length = 389

 Score =  180 bits (457), Expect = 6e-43
 Identities = 135/399 (33%), Positives = 194/399 (48%), Gaps = 23/399 (5%)
 Frame = -1

Query: 1174 SDWSQLPPELTDQITARLAL-PDLIRFGYVCTTWKSR--STPVRHKGRLPWLIVPFKNSI 1004
            +DWSQL PEL D I  +  +  D +RF  VC  W++    TP     +LPWL++P   S 
Sbjct: 2    ADWSQLHPELLDFIAKKFKIYTDYVRFRAVCHNWRASVPKTPHHLPTQLPWLMLP--QSQ 59

Query: 1003 PKKASIWINSPPFYSILDNKYYKVNLPEIIDCRIC-GASNGWLMTIHENGDIQLLHPFTR 827
            P          PF+S+  NK++ + LPE    R   G+S+GWL+ + E  +I LL+P TR
Sbjct: 60   PHHTH-----RPFFSLSLNKFHFLQLPEASHRRRRRGSSHGWLLILDEAPEIFLLNPLTR 114

Query: 826  KVIDIPSLLDMPEVFRMNRSDDGTLQYLVHYLKMTTWEDATLIRDTYIQKAIIISTPQHV 647
              + +P L   P V R N +D G    L              +RD++I+K I+ S+P + 
Sbjct: 115  SKVHLPPLSTFPNVVRFNFADVGREYALRTSSGDVYTRSLKKMRDSFIKKTILSSSPANG 174

Query: 646  EVVVCIVYTR----LFFCMPEKDDEWNYVRNSDSKKLGITGYIDVTYCRGKLYTVIFDGS 479
               + +V       L  C  + DD W ++ ++ S         DV + RG  Y V   GS
Sbjct: 175  SDFIAVVILNQTGDLALCR-KSDDSWTFLEDAQSYSE------DVIFHRGLFYAVNKYGS 227

Query: 478  LFVVEGLEGPTPVTKMLICDEGYHYGRGELNLVESSGELLKIKAIRDERKT--------- 326
            + V + + G +P  ++ I +    +G     LVES  ELL +    D             
Sbjct: 228  IAVCD-VSGSSP--RVSIIEMPQQFGGDLQYLVESGEELLLVTRYLDLTYDVEXDQTSLI 284

Query: 325  --TLSFKVSELDFEECKWVEVNDLGDRAIFLGFNYSFSLSTSDFPSCVRNCIYFTDPSVV 152
              T  F+V  LD +  +W  V+ LGDRA+FLG N S SLS+ DFP C  NCIY+TD    
Sbjct: 285  YRTTRFQVCRLDSKAPRWEVVSSLGDRALFLGENLSLSLSSVDFPGCKGNCIYYTDDYSE 344

Query: 151  ENRGG----YDLHIYNLEDGTIETIFLDDSASVWEEPIW 47
            +N  G     DL I+NLEDG+IE +        W  P+W
Sbjct: 345  DNYDGIGGEQDLGIFNLEDGSIEPLPCSHFRIRWPPPLW 383


>ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus communis]
            gi|223551319|gb|EEF52805.1| ubiquitin-protein ligase,
            putative [Ricinus communis]
          Length = 398

 Score =  161 bits (408), Expect = 3e-37
 Identities = 125/408 (30%), Positives = 190/408 (46%), Gaps = 30/408 (7%)
 Frame = -1

Query: 1180 MSSDWSQLPPELTDQITARLAL-PDLIRFGYVCTTWKSR--STPVRHKGRLPWLIVPFKN 1010
            M  DWSQLPPEL + I+  L +  D +    VC  W+     TP     +LPWL++P   
Sbjct: 1    MIMDWSQLPPELIEIISKGLTIYSDYLYSRAVCHAWRFSIPKTPNHLPPQLPWLMLPQSQ 60

Query: 1009 SIPKKASIWINSPPFYSILDNKYYKVNLPEI-IDCRICGASNGWLMTIHENGDIQLLHPF 833
            S   ++        F+S+  NK++ +NLPE+    R CG+S+GWLM + +   I L++P 
Sbjct: 61   SQSNQSR-----RAFFSLSTNKFHFLNLPEVSYRKRHCGSSHGWLMILDDTPTILLINPL 115

Query: 832  TRKVIDIPSLLDMPEVFRMNRSDDGTLQYLVHYLKMTTWEDATLIRDTYIQKAIIISTP- 656
            TR  + +P L   P V   N SD G    L + L          +RD++I+K ++ S+P 
Sbjct: 116  TRAKLSLPPLSSFPNVISFNYSDIGREYALRNLLGERVTVSLRQMRDSFIRKVVLSSSPL 175

Query: 655  ---QHVEVVVCIVYTRLFFCMPEKDDEWNYVRNSDSKKLGITGYIDVTYCRGKLYTVIFD 485
                 V + +      L +C    D  W+ V N+ S         DV +  G  Y V   
Sbjct: 176  KDNNFVVIAILNQTDDLAYCR-NGDKSWSLVENARSF------CEDVIFVNGMFYAVNKA 228

Query: 484  GSLFVVEGLEGPTPVTKMLICDEGYHYGRGELN-LVESSGELLKIKAIRDERKT------ 326
            G + + + +   +P    +   E      G++  LV S  ELL +    D          
Sbjct: 229  GQIVICD-ISSDSPRVSFM---ETPRQAGGDMQYLVNSGDELLLVTRYLDLEYEFDHPDM 284

Query: 325  -------TLSFKVSELDFEECKWVEVNDLGDRAIFLGFNYSFSLSTSDFPSCVRNCIYFT 167
                   T+ F+V  LD+   +W+ ++ LGD+A+F+G N S SLS +DF  C+ NCIY+T
Sbjct: 285  EPHLIYRTIRFEVFRLDWNGPQWLRMSTLGDKALFIGENSSLSLSATDFSGCMGNCIYYT 344

Query: 166  DPSVVENR----GGYDLHIYNLEDGTIETIFL----DDSASVWEEPIW 47
            D  +  N     G +DL I+ L D TIE +        S   W  P+W
Sbjct: 345  DDYLDANYDGHFGDHDLGIFKLCDETIEPLPCYPRNFTSPLQWSPPLW 392


>ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|222842400|gb|EEE79947.1|
            predicted protein [Populus trichocarpa]
          Length = 393

 Score =  154 bits (389), Expect = 5e-35
 Identities = 120/403 (29%), Positives = 190/403 (47%), Gaps = 25/403 (6%)
 Frame = -1

Query: 1180 MSSDWSQLPPELTDQITARLAL-PDLIRFGYVCTTWKSR--STPVRHKGRLPWLIVPFKN 1010
            M+ DW+QLPPEL + I+ ++ +  D + F  VC  WKS    TP     +LPWL+     
Sbjct: 1    MAVDWTQLPPELIEIISKKITIYSDYLHFQAVCHAWKSSIPKTPNHLPPQLPWLL----- 55

Query: 1009 SIPKKASIWINSPPFYSILDNKYYKVNLPEIIDCRI-CGASNGWLMTIHENGDIQLLHPF 833
             +P+  S   +   F+++   K++ +NLPE    +  CG+S+GWL+ + ++  I +++P 
Sbjct: 56   -LPQSQSNQSSYRAFFNLSTYKFHSLNLPEASHRKKHCGSSHGWLIILDDSPSILVINPL 114

Query: 832  TRKVIDIPSLLDMPEVFRMNRSDDGTLQYLVHYLKMTTWEDATLIRDTYIQKAIIISTPQ 653
            TR+ I +P++   P V   + ++ G    LV+            +RD +I+K ++ S+P 
Sbjct: 115  TRRKIHLPAISSFPNVVSFDYANVGREYLLVNPQGERNTASLRQMRDGFIKKVVMSSSPL 174

Query: 652  H------VEVVVCIVYTRLFFCMPEKDDEWNYVRNSDSKKLGITGYIDVTYCRGKLYTVI 491
                   V + +      L +C    D+ WN V NS S         DV Y  G  Y V 
Sbjct: 175  EKKGDFFVAMAILCSTGDLAYCK-NGDECWNIVENSRSFSE------DVIYFNGLFYAVN 227

Query: 490  FDGSLFVVEGLEGPTPVTKMLICDEGYHYGRGELNLVESSGELLKIKAIRDERKT----- 326
              G + V + + G +P  K+   +     G     LV S   LL +    D         
Sbjct: 228  KAGQIVVCD-VNGNSP--KVSFIETPRQIGGDMQYLVSSGDGLLLVTRYLDLDVEFDIFI 284

Query: 325  --TLSFKVSELDFEECKWVEVNDLGDRAIFLGFNYSFSLSTSDFPSCVRNCIYFTDPSVV 152
              T  F+V +LD    +W  V  LGD  +F+G N S +LS S    C+ +CIY+TD    
Sbjct: 285  YKTARFEVFKLDLNGPRWERVTSLGDMMLFIGENSSLALSASGLSGCMGDCIYYTDDYSA 344

Query: 151  ENRGG----YDLHIYNLEDGTIETI--FLDDSAS--VWEEPIW 47
             N  G    +DL I+ L DG+IE +  +  +S S   W  P+W
Sbjct: 345  NNYDGHIGEHDLGIFKLSDGSIEPLPCYPRNSYSRLQWPPPLW 387


>ref|XP_002510608.1| conserved hypothetical protein [Ricinus communis]
            gi|223551309|gb|EEF52795.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 406

 Score =  149 bits (376), Expect = 1e-33
 Identities = 118/391 (30%), Positives = 184/391 (47%), Gaps = 27/391 (6%)
 Frame = -1

Query: 1174 SDWSQLPPELTDQITARLA-LPDLIRFGYVCTTWKSRSTPVRHK--GRLPWLIVPFKNSI 1004
            S+WS+LP EL   IT + +   D I    VC +W S      H    +LPWL++P+  + 
Sbjct: 2    SNWSELPQELLQTITQKQSNYVDYISTRAVCKSWWSAIPKKPHDLLCQLPWLLLPYHKNN 61

Query: 1003 PKKASIWINSPPFYSILDNKYYKVNLPEIIDCRICGASNGWLMTIHENGDIQLLHPFTRK 824
            P       N   FY++ D K Y + LPE I+ R CG+S+GWL+ + +   I LL+P T+ 
Sbjct: 62   P-------NHRGFYNLADGKTYHLELPETIEKRCCGSSHGWLVMVEDTPSIFLLNPLTKA 114

Query: 823  VIDIPSLLDMP-----EVFRMNRSDDGTLQYLVHYLKMTTWEDATLIRDTYIQKAIIIST 659
             I++PSL   P      V+  +R+ +   +Y     K+        IR+TYI+KAI+   
Sbjct: 115  RIELPSLSTFPYFPTEVVYENSRNIN---EYFNTKAKLR-------IRETYIRKAIVSED 164

Query: 658  PQHVEVVVCIVY------TRLFFCMPEKDDEWNYVRNSDSKKLGITGYIDVTYCRGKLYT 497
            P      V  +Y        + FC    D  W  ++ +  K      Y DV + RGK Y 
Sbjct: 165  PSTGNFAVMAIYKTINSTENIAFC-KSGDATWFTIQETSQK----IHYQDVMFHRGKFYA 219

Query: 496  VIFDGSLFV---------VEGLEGPTPVTKMLICDEGYHYGRGELNLVESSGELLKIKAI 344
            V   G + +         V  +  P PV  ++   + Y     E  ++  +G   K +  
Sbjct: 220  VDDKGRVSICITDINPPSVIQVADPPPVPPLMGYKQWYLASLDEDLIL--AGRFRKYRGS 277

Query: 343  RDERKTTLSFKVSELDFEECKWVEVNDLGDRAIFLGFNYSFSLSTSDFPSCVRNCIYFTD 164
              E +T   F V +LD     W+E++ LGD   FLG+N   S+ST ++ +   NCIYFTD
Sbjct: 278  GYEYQTH-KFMVYKLDASSSNWLELDGLGDMLSFLGWNCFHSISTQNYRNYSGNCIYFTD 336

Query: 163  PSVVENRG----GYDLHIYNLEDGTIETIFL 83
               +        G+D  I+NL+D +++ + L
Sbjct: 337  DKFIVGSDFPWEGHDYGIFNLDDKSVQRLGL 367