BLASTX nr result
ID: Coptis25_contig00034034
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00034034
(694 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002595085.1| hypothetical protein BRAFLDRAFT_90195 [Branc... 62 1e-07
gb|ELW62726.1| Splicing factor 3B subunit 1 [Tupaia chinensis] 62 1e-07
ref|XP_004085416.1| PREDICTED: splicing factor 3B subunit 1-like... 62 1e-07
gb|ELK04810.1| Splicing factor 3B subunit 1 [Pteropus alecto] 62 1e-07
gb|JAA59670.1| Putative splicing factor 3b subunit 1 [Rhipicepha... 62 1e-07
>ref|XP_002595085.1| hypothetical protein BRAFLDRAFT_90195 [Branchiostoma floridae]
gi|229280327|gb|EEN51096.1| hypothetical protein
BRAFLDRAFT_90195 [Branchiostoma floridae]
Length = 1317
Score = 62.0 bits (149), Expect = 1e-07
Identities = 42/95 (44%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Frame = -1
Query: 385 PNLCYHQVVLKQYNYMSAKVRQQAANRSYVEDSSCLEAVRVNCQEEQLMGHL-VILFEHL 209
P +C +L + N +AKVRQQAA+ S + V CQEE+LMGHL V+L+E+L
Sbjct: 943 PQIC--GTILWRLNNKAAKVRQQAADLI-----SRIAVVMKTCQEEKLMGHLGVVLYEYL 995
Query: 208 GIEYQEVVGLIFRALKTNSQWCWFEKMSP*IIQFL 104
G EY EV+G I ALK +KM+P I L
Sbjct: 996 GEEYPEVLGSILGALKAIVNVIGMQKMTPPIKDLL 1030
Score = 60.5 bits (145), Expect = 3e-07
Identities = 45/108 (41%), Positives = 57/108 (52%), Gaps = 6/108 (5%)
Frame = -2
Query: 579 RRMVTETIGNVLLNLGASDIDAYLEELLIDPVCILRTNQQ*C*CDSERVRYCS------K 418
R+MV ETI ++ NLGA+DID+ LEE LID + Q +E V +
Sbjct: 878 RKMVMETIEKIMANLGAADIDSRLEEQLIDGILYAFQEQ-----TTEDVVMLNGFGTIVN 932
Query: 417 CSLTES*PDLPQICATIKWCLNNIIT*VQRLGNKQQIDLMSRIAVVLK 274
P LPQIC TI W LNN V+ +Q DL+SRIAVV+K
Sbjct: 933 ALAKRVKPYLPQICGTILWRLNNKAAKVR----QQAADLISRIAVVMK 976
Score = 57.4 bits (137), Expect = 3e-06
Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 4/165 (2%)
Frame = -3
Query: 491 ILCAF*EQTSSDVNVILNGFAIAVNAL*QRVNPTFPKF---VLPSSGA*TI*LHECKG*A 321
IL AF EQT+ DV V+LNGF VNAL +RV P P+ +L + +
Sbjct: 909 ILYAFQEQTTEDV-VMLNGFGTIVNALAKRVKPYLPQICGTILWRLNNKAAKVRQQAADL 967
Query: 320 TSSKSILCRG*QLXXXSTCQLSRGTTHGSSGYLV*ALGNRVPRGCGLDF*SIEDK*SMVL 141
S +++ + TCQ + H L LG P G +++ +++
Sbjct: 968 ISRIAVVMK--------TCQEEKLMGH-LGVVLYEYLGEEYPEVLGSILGALKAIVNVIG 1018
Query: 140 V*E-NESLNHSISQLAHILKNRHKRVEGNCVELDGRIADRRAEFV 9
+ + + + +L ILKNRH++V+ NC++L GRIADR +EFV
Sbjct: 1019 MQKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGSEFV 1063
>gb|ELW62726.1| Splicing factor 3B subunit 1 [Tupaia chinensis]
Length = 1364
Score = 61.6 bits (148), Expect = 1e-07
Identities = 44/95 (46%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Frame = -1
Query: 385 PNLCYHQVVLKQYNYMSAKVRQQAANRSYVEDSSCLEAVRVNCQEEQLMGHL-VILFEHL 209
P +C VL + N SAKVRQQAA+ S V CQEE+LMGHL V+L+E+L
Sbjct: 990 PQIC--GTVLWRLNNKSAKVRQQAADLI-----SRTAVVMKTCQEEKLMGHLGVVLYEYL 1042
Query: 208 GIEYQEVVGLIFRALKTNSQWCWFEKMSP*IIQFL 104
G EY EV+G I ALK KM+P I L
Sbjct: 1043 GEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLL 1077
Score = 58.2 bits (139), Expect = 2e-06
Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 4/165 (2%)
Frame = -3
Query: 491 ILCAF*EQTSSDVNVILNGFAIAVNAL*QRVNPTFPKF---VLPSSGA*TI*LHECKG*A 321
IL AF EQT+ D +V+LNGF VNAL +RV P P+ VL + + +
Sbjct: 956 ILYAFQEQTTED-SVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADL 1014
Query: 320 TSSKSILCRG*QLXXXSTCQLSRGTTHGSSGYLV*ALGNRVPRGCGLDF*SIEDK*SMVL 141
S +++ + TCQ + H L LG P G +++ +++
Sbjct: 1015 ISRTAVVMK--------TCQEEKLMGH-LGVVLYEYLGEEYPEVLGSILGALKAIVNVIG 1065
Query: 140 V*E-NESLNHSISQLAHILKNRHKRVEGNCVELDGRIADRRAEFV 9
+ + + + +L ILKNRH++V+ NC++L GRIADR AE+V
Sbjct: 1066 MHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYV 1110
>ref|XP_004085416.1| PREDICTED: splicing factor 3B subunit 1-like [Oryzias latipes]
Length = 1314
Score = 61.6 bits (148), Expect = 1e-07
Identities = 44/95 (46%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Frame = -1
Query: 385 PNLCYHQVVLKQYNYMSAKVRQQAANRSYVEDSSCLEAVRVNCQEEQLMGHL-VILFEHL 209
P +C VL + N SAKVRQQAA+ S V CQEE+LMGHL V+L+E+L
Sbjct: 940 PQIC--GTVLWRLNNKSAKVRQQAADLI-----SRTAVVMKTCQEEKLMGHLGVVLYEYL 992
Query: 208 GIEYQEVVGLIFRALKTNSQWCWFEKMSP*IIQFL 104
G EY EV+G I ALK KM+P I L
Sbjct: 993 GEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLL 1027
Score = 58.2 bits (139), Expect = 2e-06
Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 4/165 (2%)
Frame = -3
Query: 491 ILCAF*EQTSSDVNVILNGFAIAVNAL*QRVNPTFPKF---VLPSSGA*TI*LHECKG*A 321
IL AF EQT+ D +V+LNGF VNAL +RV P P+ VL + + +
Sbjct: 906 ILYAFQEQTTED-SVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADL 964
Query: 320 TSSKSILCRG*QLXXXSTCQLSRGTTHGSSGYLV*ALGNRVPRGCGLDF*SIEDK*SMVL 141
S +++ + TCQ + H L LG P G +++ +++
Sbjct: 965 ISRTAVVMK--------TCQEEKLMGH-LGVVLYEYLGEEYPEVLGSILGALKAIVNVIG 1015
Query: 140 V*E-NESLNHSISQLAHILKNRHKRVEGNCVELDGRIADRRAEFV 9
+ + + + +L ILKNRH++V+ NC++L GRIADR AE+V
Sbjct: 1016 MHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYV 1060
>gb|ELK04810.1| Splicing factor 3B subunit 1 [Pteropus alecto]
Length = 1337
Score = 61.6 bits (148), Expect = 1e-07
Identities = 44/95 (46%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Frame = -1
Query: 385 PNLCYHQVVLKQYNYMSAKVRQQAANRSYVEDSSCLEAVRVNCQEEQLMGHL-VILFEHL 209
P +C VL + N SAKVRQQAA+ S V CQEE+LMGHL V+L+E+L
Sbjct: 963 PQIC--GTVLWRLNNKSAKVRQQAADLI-----SRTAVVMKTCQEEKLMGHLGVVLYEYL 1015
Query: 208 GIEYQEVVGLIFRALKTNSQWCWFEKMSP*IIQFL 104
G EY EV+G I ALK KM+P I L
Sbjct: 1016 GEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLL 1050
Score = 58.2 bits (139), Expect = 2e-06
Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 4/165 (2%)
Frame = -3
Query: 491 ILCAF*EQTSSDVNVILNGFAIAVNAL*QRVNPTFPKF---VLPSSGA*TI*LHECKG*A 321
IL AF EQT+ D +V+LNGF VNAL +RV P P+ VL + + +
Sbjct: 929 ILYAFQEQTTED-SVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADL 987
Query: 320 TSSKSILCRG*QLXXXSTCQLSRGTTHGSSGYLV*ALGNRVPRGCGLDF*SIEDK*SMVL 141
S +++ + TCQ + H L LG P G +++ +++
Sbjct: 988 ISRTAVVMK--------TCQEEKLMGH-LGVVLYEYLGEEYPEVLGSILGALKAIVNVIG 1038
Query: 140 V*E-NESLNHSISQLAHILKNRHKRVEGNCVELDGRIADRRAEFV 9
+ + + + +L ILKNRH++V+ NC++L GRIADR AE+V
Sbjct: 1039 MHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYV 1083
>gb|JAA59670.1| Putative splicing factor 3b subunit 1 [Rhipicephalus pulchellus]
Length = 1331
Score = 61.6 bits (148), Expect = 1e-07
Identities = 43/95 (45%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Frame = -1
Query: 385 PNLCYHQVVLKQYNYMSAKVRQQAANRSYVEDSSCLEAVRVNCQEEQLMGHL-VILFEHL 209
P +C +L + N SAKVRQQAA+ S + V CQEE+LMGHL V+L+E+L
Sbjct: 957 PQIC--GTILWRLNNKSAKVRQQAADLI-----SRIAVVMKTCQEEKLMGHLGVVLYEYL 1009
Query: 208 GIEYQEVVGLIFRALKTNSQWCWFEKMSP*IIQFL 104
G EY EV+G I ALK KM+P I L
Sbjct: 1010 GEEYPEVLGSILGALKGIVNVIGMHKMTPPIKDLL 1044
Score = 57.8 bits (138), Expect = 2e-06
Identities = 44/107 (41%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Frame = -2
Query: 579 RRMVTETIGNVLLNLGASDIDAYLEELLIDPVCILRTNQQ*C*CDSERVRYCSKCSLTES 400
R+MV ETI +L NLGA+DID+ LEE LID + Q + V ++ +
Sbjct: 892 RKMVMETIEKILGNLGATDIDSRLEEQLIDGILYAYQEQ----TTEDMVMLNGFGTIVNA 947
Query: 399 *PD-----LPQICATIKWCLNNIIT*VQRLGNKQQIDLMSRIAVVLK 274
LPQIC TI W LNN V+ +Q DL+SRIAVV+K
Sbjct: 948 LGKRVKAYLPQICGTILWRLNNKSAKVR----QQAADLISRIAVVMK 990