BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00034033
         (287 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002866187.1| ATLIG4 [Arabidopsis lyrata subsp. lyrata] gi...   106   2e-21
dbj|BAA97366.1| unnamed protein product [Arabidopsis thaliana]        106   2e-21
ref|NP_568851.2| DNA ligase 4 [Arabidopsis thaliana] gi|75174554...   106   2e-21
ref|XP_004149513.1| PREDICTED: DNA ligase 4-like [Cucumis sativus]    101   7e-20
ref|XP_002527709.1| DNA ligase IV, putative [Ricinus communis] g...    99   3e-19

>ref|XP_002866187.1| ATLIG4 [Arabidopsis lyrata subsp. lyrata]
           gi|297312022|gb|EFH42446.1| ATLIG4 [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1221

 Score =  106 bits (264), Expect = 2e-21
 Identities = 54/85 (63%), Positives = 63/85 (74%)
 Frame = +3

Query: 33  VPFSVLCSMYNWMAXXXXXXXXXXXXXXXLDNYCKSPSDYFNSIRLILPSLDRERGSYGL 212
           + FSVL S++NW+                LD YCK PSDYF ++RLI+PSLDRERGSYGL
Sbjct: 5   IKFSVLVSLFNWIQKSKTSSQKRSKFRKFLDTYCK-PSDYFVAVRLIIPSLDRERGSYGL 63

Query: 213 KESVLATCLIDALGISRESEDAVRL 287
           KESVLATCLIDALGISR++ DAVRL
Sbjct: 64  KESVLATCLIDALGISRDAPDAVRL 88


>dbj|BAA97366.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1184

 Score =  106 bits (264), Expect = 2e-21
 Identities = 54/85 (63%), Positives = 63/85 (74%)
 Frame = +3

Query: 33  VPFSVLCSMYNWMAXXXXXXXXXXXXXXXLDNYCKSPSDYFNSIRLILPSLDRERGSYGL 212
           + FSVL S++NW+                LD YCK PSDYF ++RLI+PSLDRERGSYGL
Sbjct: 5   IKFSVLVSLFNWIQKSKTSSQKRSKFRKFLDTYCK-PSDYFVAVRLIIPSLDRERGSYGL 63

Query: 213 KESVLATCLIDALGISRESEDAVRL 287
           KESVLATCLIDALGISR++ DAVRL
Sbjct: 64  KESVLATCLIDALGISRDAPDAVRL 88


>ref|NP_568851.2| DNA ligase 4 [Arabidopsis thaliana]
           gi|75174554|sp|Q9LL84.1|DNLI4_ARATH RecName: Full=DNA
           ligase 4; AltName: Full=DNA ligase IV; AltName:
           Full=Polydeoxyribonucleotide synthase [ATP] 4
           gi|9651815|gb|AAF91284.1|AF233527_1 DNA ligase IV
           [Arabidopsis thaliana] gi|332009474|gb|AED96857.1| DNA
           ligase 4 [Arabidopsis thaliana]
          Length = 1219

 Score =  106 bits (264), Expect = 2e-21
 Identities = 54/85 (63%), Positives = 63/85 (74%)
 Frame = +3

Query: 33  VPFSVLCSMYNWMAXXXXXXXXXXXXXXXLDNYCKSPSDYFNSIRLILPSLDRERGSYGL 212
           + FSVL S++NW+                LD YCK PSDYF ++RLI+PSLDRERGSYGL
Sbjct: 5   IKFSVLVSLFNWIQKSKTSSQKRSKFRKFLDTYCK-PSDYFVAVRLIIPSLDRERGSYGL 63

Query: 213 KESVLATCLIDALGISRESEDAVRL 287
           KESVLATCLIDALGISR++ DAVRL
Sbjct: 64  KESVLATCLIDALGISRDAPDAVRL 88


>ref|XP_004149513.1| PREDICTED: DNA ligase 4-like [Cucumis sativus]
          Length = 1214

 Score =  101 bits (251), Expect = 7e-20
 Identities = 51/85 (60%), Positives = 64/85 (75%)
 Frame = +3

Query: 33  VPFSVLCSMYNWMAXXXXXXXXXXXXXXXLDNYCKSPSDYFNSIRLILPSLDRERGSYGL 212
           + F+VL S+++W+                LD +C SPS YF++IRLILPSLDRERG+YGL
Sbjct: 5   IKFAVLSSLFDWIQRSKSSAKKRSKFRKFLDTFC-SPSHYFSAIRLILPSLDRERGTYGL 63

Query: 213 KESVLATCLIDALGISRESEDAVRL 287
           KESVLATCLIDALG+SR+SEDA+RL
Sbjct: 64  KESVLATCLIDALGMSRDSEDALRL 88


>ref|XP_002527709.1| DNA ligase IV, putative [Ricinus communis]
           gi|223532899|gb|EEF34668.1| DNA ligase IV, putative
           [Ricinus communis]
          Length = 850

 Score = 99.4 bits (246), Expect = 3e-19
 Identities = 50/83 (60%), Positives = 60/83 (72%)
 Frame = +3

Query: 39  FSVLCSMYNWMAXXXXXXXXXXXXXXXLDNYCKSPSDYFNSIRLILPSLDRERGSYGLKE 218
           FSV+ S++ W+                LD +CK P DYF++IRLILPSLDRERGSYGLKE
Sbjct: 8   FSVMVSLFEWIQKSKYSAKKRSKFRKFLDTFCK-PDDYFSAIRLILPSLDRERGSYGLKE 66

Query: 219 SVLATCLIDALGISRESEDAVRL 287
           SVLATCL+DAL +SR+S DAVRL
Sbjct: 67  SVLATCLVDALAMSRDSPDAVRL 89