BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00034020
         (487 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002305539.1| f-box family protein [Populus trichocarpa] g...    72   5e-11
ref|XP_004154592.1| PREDICTED: F-box protein SKIP23-like [Cucumi...    71   8e-11
ref|XP_004140043.1| PREDICTED: F-box protein SKIP23-like [Cucumi...    71   8e-11
ref|XP_002884031.1| hypothetical protein ARALYDRAFT_480586 [Arab...    67   2e-09
emb|CAN66619.1| hypothetical protein VITISV_028369 [Vitis vinifera]    66   3e-09

>ref|XP_002305539.1| f-box family protein [Populus trichocarpa]
           gi|222848503|gb|EEE86050.1| f-box family protein
           [Populus trichocarpa]
          Length = 469

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 47/139 (33%), Positives = 64/139 (46%)
 Frame = +1

Query: 34  DWSGLQEDLLIEISKHIHTRFESIKFRSVCQSWRSXXXXXXXXXXXXXXXXILDDHDITH 213
           +W+ L +DL+  ISK + T  + ++FRSVC SWRS                IL +  I+H
Sbjct: 3   EWTHLPKDLMELISKRLDTSTDLLRFRSVCNSWRS-SIPPEPPCLSSNTFKILPNDGISH 61

Query: 214 TRLGSCKLVETTIYTLRPKEQLQTQPESGSSWLIKVEEESPNVVHLIDPLLRWYEYAPPE 393
           T  G      T      P    QT  +    WLIK+EE+ P   HL DPL R    + P 
Sbjct: 62  TSFGFSLFKRTVFLVGLPNSHNQTDTQ---GWLIKIEEDVPGKKHLFDPLSRCRSTSLPN 118

Query: 394 PFSEVLNLSDFQIYGLCKE 450
               VL+L + +I  L  E
Sbjct: 119 NLPRVLDLMNLRIRELGHE 137


>ref|XP_004154592.1| PREDICTED: F-box protein SKIP23-like [Cucumis sativus]
          Length = 458

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 44/139 (31%), Positives = 73/139 (52%)
 Frame = +1

Query: 34  DWSGLQEDLLIEISKHIHTRFESIKFRSVCQSWRSXXXXXXXXXXXXXXXXILDDHDITH 213
           +WS L +DLL  IS+ +   F++++FRSVC SWRS                 L +H I+ 
Sbjct: 3   EWSHLPKDLLYLISQRLQNPFDTMRFRSVCSSWRS--VVSPKRHTLPVRFPFLPNHGISD 60

Query: 214 TRLGSCKLVETTIYTLRPKEQLQTQPESGSSWLIKVEEESPNVVHLIDPLLRWYEYAPPE 393
              G   L + +I+      ++ +  +    WLIKVEE++  ++ + +PL + Y    P+
Sbjct: 61  PTWG-FNLTKRSIF------RVGSPMDHSDGWLIKVEEDACGMIKISNPLSKSYFKPLPK 113

Query: 394 PFSEVLNLSDFQIYGLCKE 450
            F +VLNL +F +  LC+E
Sbjct: 114 NFPKVLNLLNFPVLELCQE 132


>ref|XP_004140043.1| PREDICTED: F-box protein SKIP23-like [Cucumis sativus]
          Length = 404

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 44/139 (31%), Positives = 73/139 (52%)
 Frame = +1

Query: 34  DWSGLQEDLLIEISKHIHTRFESIKFRSVCQSWRSXXXXXXXXXXXXXXXXILDDHDITH 213
           +WS L +DLL  IS+ +   F++++FRSVC SWRS                 L +H I+ 
Sbjct: 3   EWSHLPKDLLYLISQRLQNPFDTMRFRSVCSSWRS--VVSPKRHTLPVRFPFLPNHGISD 60

Query: 214 TRLGSCKLVETTIYTLRPKEQLQTQPESGSSWLIKVEEESPNVVHLIDPLLRWYEYAPPE 393
              G   L + +I+      ++ +  +    WLIKVEE++  ++ + +PL + Y    P+
Sbjct: 61  PTWG-FNLTKRSIF------RVGSPMDHSDGWLIKVEEDACGMIKISNPLSKSYFKPLPK 113

Query: 394 PFSEVLNLSDFQIYGLCKE 450
            F +VLNL +F +  LC+E
Sbjct: 114 NFPKVLNLLNFPVLELCQE 132


>ref|XP_002884031.1| hypothetical protein ARALYDRAFT_480586 [Arabidopsis lyrata subsp.
           lyrata] gi|297329871|gb|EFH60290.1| hypothetical protein
           ARALYDRAFT_480586 [Arabidopsis lyrata subsp. lyrata]
          Length = 395

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 2/141 (1%)
 Frame = +1

Query: 34  DWSGLQEDLLIEISKHIHTRFESIKFRSVCQSWRSXXXXXXXXXXXXXXXXILDDHDITH 213
           DWS L +DLL  ISK + + F+ ++FRSVC SWRS                  +   +  
Sbjct: 3   DWSTLPKDLLDLISKSLESSFDLVQFRSVCSSWRSAAEPKRPLPTHHLPILPDNGGSLFP 62

Query: 214 TRLGSCKLVETTIYTLRPKEQLQTQPESGSSWLIKVEEE--SPNVVHLIDPLLRWYEYAP 387
                 +L + +I  ++P E    + +S   WLIKVEE+   P  V L+DPL      + 
Sbjct: 63  DSAVGFRLSQRSILLIKPHEPPHNEADS-FGWLIKVEEDLNVPRKVTLLDPLCD-KRNSI 120

Query: 388 PEPFSEVLNLSDFQIYGLCKE 450
           PE F  VL++S F++  L +E
Sbjct: 121 PENFPHVLDMSKFKVRELGRE 141


>emb|CAN66619.1| hypothetical protein VITISV_028369 [Vitis vinifera]
          Length = 986

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 45/143 (31%), Positives = 69/143 (48%), Gaps = 11/143 (7%)
 Frame = +1

Query: 37  WSGLQEDLLIEISKHIHTRFESIKFRSVCQSWRSXXXXXXXXXXXXXXXXI--------- 189
           WS L +DLL +I+  + TR + + FR VC SW S                +         
Sbjct: 8   WSHLPKDLLAKIAGRLDTRIDFLHFRGVCSSWMSSVSPTFPSKNPLLSLKLPYPIASNAN 67

Query: 190 --LDDHDITHTRLGSCKLVETTIYTLRPKEQLQTQPESGSSWLIKVEEESPNVVHLIDPL 363
             + D D  + R GS  L+E+T+Y L+P   L+  P+S  + L+K+EE  P    L+D L
Sbjct: 68  LNIXDPDTRNPR-GSFSLIESTLYYLQP---LRQTPDSKEALLVKLEEPKPGKGRLMDTL 123

Query: 364 LRWYEYAPPEPFSEVLNLSDFQI 432
            R      P+ F +VLN  +F++
Sbjct: 124 SRCAIQHLPKNFPKVLNTLNFRV 146



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 45/143 (31%), Positives = 69/143 (48%), Gaps = 11/143 (7%)
 Frame = +1

Query: 37  WSGLQEDLLIEISKHIHTRFESIKFRSVCQSWRSXXXXXXXXXXXXXXXXI--------- 189
           WS L +DLL +I+  + T  + ++FR VC SW S                I         
Sbjct: 398 WSHLPKDLLAKIAGRLDTXIDFLRFRGVCSSWMSSVSPTFPSKNPLLSLKIPYPIDSIAN 457

Query: 190 --LDDHDITHTRLGSCKLVETTIYTLRPKEQLQTQPESGSSWLIKVEEESPNVVHLIDPL 363
             + D D  + R+ S  L+E+T+Y L+P   L+  P+S  + L+K+ E  P  V L+D L
Sbjct: 458 LNISDPDTPNPRV-SFSLIESTLYYLQP---LRQTPDSKEALLVKLXEPKPGKVRLMDTL 513

Query: 364 LRWYEYAPPEPFSEVLNLSDFQI 432
            R      P+ F +VLN  DF++
Sbjct: 514 SRRAIKHLPKNFPKVLNTLDFRV 536