BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00034015
         (314 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]             107   8e-22
gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]             107   8e-22
emb|CAN69143.1| hypothetical protein VITISV_027770 [Vitis vinifera]   106   2e-21
gb|AAD22505.1| putative retroelement gag/pol polyprotein [Arabid...   106   2e-21
emb|CAN84035.1| hypothetical protein VITISV_016995 [Vitis vinifera]   103   2e-20

>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score =  107 bits (268), Expect = 8e-22
 Identities = 51/102 (50%), Positives = 77/102 (75%)
 Frame = -1

Query: 308  ECEEAFQELKIYLGKAPLLSRPMEGEILYLYLGVSEYAISSVLVRIVEKIEKPVYFQSKT 129
            + EEAF++LK YL   P+L +P  GE LYLY+ VS++A+SSVLVR     ++P+++ SK+
Sbjct: 1094 DSEEAFEKLKDYLSTPPILVKPEVGETLYLYIAVSDHAVSSVLVREDRGEQRPIFYTSKS 1153

Query: 128  MLTAETRYSRIKKHALALIFSALKLKPYFDAHSVVVITNLPL 3
            ++ AETRY  I+K ALA++ SA KL+PYF +H++ V+T+ PL
Sbjct: 1154 LVEAETRYPVIEKAALAVVTSARKLRPYFQSHTIAVLTDQPL 1195


>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score =  107 bits (268), Expect = 8e-22
 Identities = 54/102 (52%), Positives = 73/102 (71%)
 Frame = -1

Query: 308 ECEEAFQELKIYLGKAPLLSRPMEGEILYLYLGVSEYAISSVLVRIVEKIEKPVYFQSKT 129
           +CEEAF +LK YL   P+LS+P   E LYLY+ VS +A+S VLVR     +KP+Y+ SK+
Sbjct: 291 KCEEAFGQLKAYLTTPPILSKPEVDEKLYLYVSVSNHAVSGVLVREDRGEQKPIYYVSKS 350

Query: 128 MLTAETRYSRIKKHALALIFSALKLKPYFDAHSVVVITNLPL 3
           M   ETRY+ ++K ALA++ SA KL+PYF +H V V+TN PL
Sbjct: 351 MTDPETRYTMMEKLALAVVTSARKLRPYFQSHPVQVLTNQPL 392


>emb|CAN69143.1| hypothetical protein VITISV_027770 [Vitis vinifera]
          Length = 622

 Score =  106 bits (265), Expect = 2e-21
 Identities = 54/102 (52%), Positives = 73/102 (71%), Gaps = 1/102 (0%)
 Frame = -1

Query: 305 CEEAFQELKIYLGKAPLLSRPMEGEILYLYLGVSEYAISSVLVRIVEKIE-KPVYFQSKT 129
           C+ AF+E+K YL + P+LS P  GE LYLYL V ++A+S VL+R +   E +PVYF SK 
Sbjct: 144 CQNAFEEIKRYLSQPPILSSPQPGERLYLYLAVIDWAVSVVLLRSLSPREQRPVYFISKA 203

Query: 128 MLTAETRYSRIKKHALALIFSALKLKPYFDAHSVVVITNLPL 3
           +   ETRYSR+++ ALAL  +A KL+PYF AH + V+TN PL
Sbjct: 204 LADTETRYSRMEQTALALRTAAQKLRPYFQAHPITVLTNQPL 245


>gb|AAD22505.1| putative retroelement gag/pol polyprotein [Arabidopsis thaliana]
          Length = 1212

 Score =  106 bits (265), Expect = 2e-21
 Identities = 51/101 (50%), Positives = 75/101 (74%)
 Frame = -1

Query: 305 CEEAFQELKIYLGKAPLLSRPMEGEILYLYLGVSEYAISSVLVRIVEKIEKPVYFQSKTM 126
           CEEAF++LK YL +  +L++P  GE L+LY+ VSE AIS VLVR+    E+P+++ SK+ 
Sbjct: 592 CEEAFRQLKSYLSEPLVLAKPEFGERLFLYISVSENAISGVLVRVERSDERPIFYVSKSF 651

Query: 125 LTAETRYSRIKKHALALIFSALKLKPYFDAHSVVVITNLPL 3
              ETRY  ++K ALA++ +A KL+PYF +H +VV+T+LPL
Sbjct: 652 SDVETRYPMMEKLALAVVTAARKLRPYFQSHPIVVLTSLPL 692


>emb|CAN84035.1| hypothetical protein VITISV_016995 [Vitis vinifera]
          Length = 965

 Score =  103 bits (256), Expect = 2e-20
 Identities = 53/105 (50%), Positives = 75/105 (71%), Gaps = 1/105 (0%)
 Frame = -1

Query: 314 TTECEEAFQELKIYLGKAPLLSRPMEGEILYLYLGVSEYAISSVLVRIVE-KIEKPVYFQ 138
           T  C+ AF+++K YL + P+LS P+  E LY+YL VSE+AIS+VL R    K +KPVY+ 
Sbjct: 289 TDSCQNAFEKIKHYLMQPPILSSPIPKEKLYMYLAVSEWAISAVLFRYPSPKEQKPVYYV 348

Query: 137 SKTMLTAETRYSRIKKHALALIFSALKLKPYFDAHSVVVITNLPL 3
           S+ +   ETRYS+++  ALAL  +A KL+PYF AH V+V+T+ PL
Sbjct: 349 SRALADVETRYSKMELTALALRSAAQKLRPYFQAHPVIVLTDQPL 393