BLASTX nr result
ID: Coptis25_contig00033998
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00033998 (1125 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002320506.1| f-box family protein [Populus trichocarpa] g... 108 3e-21 ref|XP_002301588.1| f-box family protein [Populus trichocarpa] g... 106 1e-20 ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vi... 99 3e-18 ref|XP_004140601.1| PREDICTED: F-box protein At3g07870-like [Cuc... 94 8e-17 ref|XP_002308787.1| f-box family protein [Populus trichocarpa] g... 93 1e-16 >ref|XP_002320506.1| f-box family protein [Populus trichocarpa] gi|222861279|gb|EEE98821.1| f-box family protein [Populus trichocarpa] Length = 422 Score = 108 bits (269), Expect = 3e-21 Identities = 70/214 (32%), Positives = 100/214 (46%), Gaps = 16/214 (7%) Frame = -3 Query: 1114 SCNGLVFSAIQPY----FISNPVTGEYIVIPKPPRYAHVDVVTGFGFDPVSKVFKIIRII 947 SCNGL+ + Y +I NP TG Y +PK +Y +VV+GFGF+P +K +K+IRI+ Sbjct: 127 SCNGLLCLSDSLYNDSLYIYNPFTGCYKELPKSLQYPDQEVVSGFGFNPKTKEYKVIRIV 186 Query: 946 QDTEEFE------------TSAEVYNVGTGKWRLISKVPYSFKGTKSNVFVNGALHWIGS 803 + ++ +G +WR + KV Y S VNG LHWI Sbjct: 187 YYRNGHGGYPRSRRIIYPLSEVQILTLGCPEWRSLGKVSYRLVRRASGALVNGRLHWISR 246 Query: 802 PCVKTMDSEVIVSFKLDTEEFQQVXXXXXXXXXXXXXSHFLSDLFASILRRFSQYLAVLD 623 PC + + +VSF L E+F++V S L R + +L VL Sbjct: 247 PC-RNKPARRLVSFDLTDEQFREV-----------------SKPDCGGLNRCNYHLVVLR 288 Query: 622 ECLCIVRTFNNENIEIWMMKEYGFWSSWVSKYTV 521 CL N +EIW+MKEY SWV +Y + Sbjct: 289 GCLSAAVYCNYGRLEIWVMKEYNVKESWVKEYNI 322 >ref|XP_002301588.1| f-box family protein [Populus trichocarpa] gi|222843314|gb|EEE80861.1| f-box family protein [Populus trichocarpa] Length = 408 Score = 106 bits (264), Expect = 1e-20 Identities = 67/214 (31%), Positives = 97/214 (45%), Gaps = 16/214 (7%) Frame = -3 Query: 1114 SCNGLVFSAIQPY----FISNPVTGEYIVIPKPPRYAHVDVVTGFGFDPVSKVFKIIRII 947 SCNGL+ + + +I NP TG Y +PK +Y +VV GFGF+P + +K+IRI+ Sbjct: 126 SCNGLLCLSDSLFNDSLYIYNPFTGRYKELPKSLQYPDQEVVFGFGFNPKTNEYKVIRIV 185 Query: 946 QDTEEFE------------TSAEVYNVGTGKWRLISKVPYSFKGTKSNVFVNGALHWIGS 803 + ++ +G WR + KV Y S VNG LHW+ Sbjct: 186 YYRNGHGRYPRSRRIIYPLSQVQILTLGCPGWRSLGKVSYRLVRRASETLVNGRLHWVSR 245 Query: 802 PCVKTMDSEVIVSFKLDTEEFQQVXXXXXXXXXXXXXSHFLSDLFASILRRFSQYLAVLD 623 PC + + +VSF L E+F++V L R +LAVL Sbjct: 246 PC-RNKPARRLVSFDLTDEQFREVPKPDCGG-----------------LNRCDYHLAVLR 287 Query: 622 ECLCIVRTFNNENIEIWMMKEYGFWSSWVSKYTV 521 CL + N +EIW+MKEY SWV +Y + Sbjct: 288 GCLSVAVYCNYGRLEIWVMKEYNVKESWVKEYNI 321 >ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vinifera] gi|147785390|emb|CAN68678.1| hypothetical protein VITISV_041941 [Vitis vinifera] Length = 409 Score = 98.6 bits (244), Expect = 3e-18 Identities = 58/214 (27%), Positives = 101/214 (47%), Gaps = 16/214 (7%) Frame = -3 Query: 1114 SCNGLVFSAIQPY----FISNPVTGEYIVIPKPPRYAHVDVVTGFGFDPVSKVFKIIRII 947 SCNGL+ A + ++ NP T ++ +PK +Y +VV GFG+ P+++V+K+++++ Sbjct: 127 SCNGLLCLADSLFKDAVYVHNPFTRDFKQLPKSLQYPDQEVVFGFGYHPMTEVYKVVKVV 186 Query: 946 QDTEEF------------ETSAEVYNVGTGKWRLISKVPYSFKGTKSNVFVNGALHWIGS 803 + ++ +V +G+ WR + KV Y S VNG LHW+ Sbjct: 187 YYRNGYGGFSRFRRITCSQSEVQVLTLGSPTWRSLGKVSYQLDRWPSEALVNGRLHWVTR 246 Query: 802 PCVKTMDSEVIVSFKLDTEEFQQVXXXXXXXXXXXXXSHFLSDLFASILRRFSQYLAVLD 623 P + + IVSF L E+F+++ L R + +L VL Sbjct: 247 P--RRYVTRFIVSFDLADEQFREIPKPDCGG-----------------LSRCNYHLLVLG 287 Query: 622 ECLCIVRTFNNENIEIWMMKEYGFWSSWVSKYTV 521 CL +N +E+W+MKEY SW+ ++ + Sbjct: 288 GCLSAAVHRSNGKLEVWVMKEYDVKESWIKEFNI 321 >ref|XP_004140601.1| PREDICTED: F-box protein At3g07870-like [Cucumis sativus] gi|449519392|ref|XP_004166719.1| PREDICTED: F-box protein At3g07870-like [Cucumis sativus] Length = 375 Score = 93.6 bits (231), Expect = 8e-17 Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 11/209 (5%) Frame = -3 Query: 1114 SCNGLVFSAIQPY----FISNPVTGEYIVIPKPPRYAHVDVVTGFGFDPVSKVFKIIRII 947 SCNG + + Y FI NP T +Y+ +PK +++ DVV G GF P +K KI++I+ Sbjct: 97 SCNGFLCLSDSLYNENLFIYNPFTRDYLELPKSKDFSNPDVVYGIGFHPQTKRLKILKIV 156 Query: 946 Q-------DTEEFETSAEVYNVGTGKWRLISKVPYSFKGTKSNVFVNGALHWIGSPCVKT 788 + +V+ +GT WR I ++ + +S +NG LHW+ P + Sbjct: 157 YSKGFRRIQRRFHHSEVQVFTLGTSNWRSIGRIFHHLAQGQSPAAINGRLHWVSLP-RRH 215 Query: 787 MDSEVIVSFKLDTEEFQQVXXXXXXXXXXXXXSHFLSDLFASILRRFSQYLAVLDECLCI 608 IVSF L +EEF + L R + L L++CL Sbjct: 216 YVGRTIVSFDLASEEFIDIPKPDY-----------------GSLSRCNFQLMNLNDCLSA 258 Query: 607 VRTFNNENIEIWMMKEYGFWSSWVSKYTV 521 V + +EIW+M++YG SWV + + Sbjct: 259 VVYCSYGKMEIWVMEQYGVKESWVKSFNI 287 >ref|XP_002308787.1| f-box family protein [Populus trichocarpa] gi|222854763|gb|EEE92310.1| f-box family protein [Populus trichocarpa] Length = 396 Score = 92.8 bits (229), Expect = 1e-16 Identities = 63/213 (29%), Positives = 98/213 (46%), Gaps = 15/213 (7%) Frame = -3 Query: 1114 SCNGL--VFSAIQPYFISNPVTGEYIVIPKPP----RYAHVD----VVTGFGFDPVSKVF 965 S NGL + + + + NP T ++ V+P P RY V GFG+D V + Sbjct: 101 SVNGLLCISNVVDDIAVWNPSTRKHRVVPFLPIELKRYFGTKSCSVYVFGFGYDSVRDDY 160 Query: 964 KIIRIIQ----DTEEFETSAEVYNVGTGKWRLISKVPYSFKGTKSN-VFVNGALHWIGSP 800 K++RI Q FE+ +VY++ WR I +PY +N VF NGALHW+ Sbjct: 161 KLVRIAQFGGGGKRSFESEVKVYSLRKQSWRRIGDMPYCVHYPGANGVFANGALHWVVGE 220 Query: 799 CVKTMDSEVIVSFKLDTEEFQQVXXXXXXXXXXXXXSHFLSDLFASILRRFSQYLAVLDE 620 ++ + ++V+ L E++++V + F L VL Sbjct: 221 NPESNVANIVVALDLGVEDYREVLQPEYKD------------------KNFYIDLGVLRG 262 Query: 619 CLCIVRTFNNENIEIWMMKEYGFWSSWVSKYTV 521 CLC + F E +++WMMKEYG SW ++V Sbjct: 263 CLCFLANFLGERVDVWMMKEYGVKESWTKLFSV 295