BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00033996
         (563 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas...    43   3e-08
ref|XP_002466618.1| hypothetical protein SORBIDRAFT_01g011130 [S...    44   2e-06
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...    45   6e-06

>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase);
           Polynucleotidyl transferase, Ribonuclease H fold
           [Medicago truncatula]
          Length = 729

 Score = 43.1 bits (100), Expect(2) = 3e-08
 Identities = 27/70 (38%), Positives = 38/70 (54%)
 Frame = -3

Query: 252 NPLTVIRLSQKFAQELHLLHLNIASNSIRADKRTIPLYWMSPPFDYLKFNVDGSSLGNQG 73
           NP  VI   QKF +E+      +  +S +  K TI + WM PPF ++K N DG+  G+  
Sbjct: 595 NPTLVI---QKFTREIEDNTKLVHKSSHQ--KETIYIGWMRPPFGWVKLNCDGAWKGSGT 649

Query: 72  HTGAGGVLHD 43
             G GG+L D
Sbjct: 650 LAGCGGLLRD 659



 Score = 39.7 bits (91), Expect(2) = 3e-08
 Identities = 23/85 (27%), Positives = 34/85 (40%)
 Frame = -1

Query: 530 PYCYVCTDKDESATHLFVDCSFARGVWFGLNFCSTVNQASQVNFHSWMVDVLKVLAQDID 351
           P C  C  +DE+  H+  DC  +  VW  L   + +      +   W+ + L       +
Sbjct: 503 PTCPCCAREDETVIHVLRDCVHSTQVWLRLIPHNYITNFFSFDCREWVFNNLNKKGIGDN 562

Query: 350 STYLLILFATTMW*LWLERNKFQFQ 276
                  F TT W LW  RNK  F+
Sbjct: 563 PATWQTTFMTTCWYLWNWRNKSIFE 587


>ref|XP_002466618.1| hypothetical protein SORBIDRAFT_01g011130 [Sorghum bicolor]
           gi|241920472|gb|EER93616.1| hypothetical protein
           SORBIDRAFT_01g011130 [Sorghum bicolor]
          Length = 463

 Score = 44.3 bits (103), Expect(2) = 2e-06
 Identities = 26/81 (32%), Positives = 41/81 (50%)
 Frame = -1

Query: 533 IPYCYVCTDKDESATHLFVDCSFARGVWFGLNFCSTVNQASQVNFHSWMVDVLKVLAQDI 354
           +P C VC    E   HLF  C  AR VW  L    +  +    NF++  +DV++ + +  
Sbjct: 180 VPRCPVCNQVGEDGGHLFFKCGMARQVWELLGL--STEREVLANFYT-PIDVVEFILRAS 236

Query: 353 DSTYLLILFATTMW*LWLERN 291
           +S  L+++ A  +W  W ERN
Sbjct: 237 ESRKLMMIVA--LWYTWSERN 255



 Score = 32.3 bits (72), Expect(2) = 2e-06
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = -3

Query: 258 RPNPLTVIRLSQKFAQELHLLHLNIASNSIRADKRTIPLYWMSPPFDYLKFNVDGSSLGN 79
           R +P T+ R  + + QE+        + +  A++      W  PP D LK N DG S   
Sbjct: 263 RRSPQTLARCVELYVQEMRTTE---TTANPTANQEQQQYKWSKPPVDILKLNCDG-SFSP 318

Query: 78  QGHTGAGGVL 49
           +   G+ GVL
Sbjct: 319 ETRAGSWGVL 328


>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1715

 Score = 44.7 bits (104), Expect(2) = 6e-06
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
 Frame = -1

Query: 530  PYCYVCTDKDESATHLFVDCSFARGVWFGLNFCSTVNQASQVNFHSWMVDVLKVLAQDID 351
            P C  C + DE+  H+   CS+A+ VW   NF    + ++++ F   + + ++++ Q   
Sbjct: 1424 PTCQRCCNADETINHIIFTCSYAQVVWRSANF----SGSNRLCFTDNLEENIRLILQGKK 1479

Query: 350  STYLLILFAT----TMW*LWLERNKFQFQ 276
            +  L IL        MW LW  RN++ FQ
Sbjct: 1480 NQNLPILNGLMPFWIMWRLWKSRNEYLFQ 1508



 Score = 30.4 bits (67), Expect(2) = 6e-06
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -3

Query: 186  IASNSIRADKRTIPL--YWMSPPFDYLKFNVDGSSLGNQGHTGAGGVLHD 43
            I+ N+ +++ R +     W SPP  +LK N D   +  + +T  G +L D
Sbjct: 1538 ISHNTAQSNDRPLSRSKQWSSPPEGFLKCNFDSGYVQGRDYTSTGWILRD 1587