BLASTX nr result
ID: Coptis25_contig00033953
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00033953
(531 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI36671.3| unnamed protein product [Vitis vinifera] 75 1e-20
ref|XP_003571468.1| PREDICTED: U5 small nuclear ribonucleoprotei... 69 1e-19
ref|XP_002451361.1| hypothetical protein SORBIDRAFT_04g000670 [S... 70 3e-19
ref|XP_003595992.1| U5 small nuclear ribonucleoprotein 200 kDa h... 67 3e-19
ref|XP_002266580.1| PREDICTED: U5 small nuclear ribonucleoprotei... 70 4e-19
>emb|CBI36671.3| unnamed protein product [Vitis vinifera]
Length = 1405
Score = 75.5 bits (184), Expect(2) = 1e-20
Identities = 57/146 (39%), Positives = 71/146 (48%), Gaps = 16/146 (10%)
Frame = -1
Query: 399 RTLAQRVSLMIFDEIHLLYDRRGAXXXXXXXEQLNEIRP*KS---TYGWSQSVIVICEYV 229
RT Q V L+I DEIHLL+D RG + +I K G S + + E V
Sbjct: 476 RTYTQLVKLLIVDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS-ATLPNYEDV 534
Query: 228 TSFLQVCPSVGLFYFDNRYMPCQLAQQYI*EI------------SVIG*TLLCEAGEHQV 85
FL+V GLF+FDN Y PC LAQQYI V ++ AG+HQV
Sbjct: 535 ALFLRVDLKKGLFHFDNSYRPCPLAQQYIGITVKKPLQRFQLMNDVCYEKVMAVAGKHQV 594
Query: 84 LIFVHS-KTVRTTNLVAHSHGNLLSH 10
LIFVHS K T + HSH L+ +
Sbjct: 595 LIFVHSRKETAKTAQILHSHTELVKN 620
Score = 49.3 bits (116), Expect(2) = 1e-20
Identities = 22/43 (51%), Positives = 33/43 (76%)
Frame = -2
Query: 530 SIRLRDYNFLVKELNWNHTLTCQQLQEAHIIVTTPDIWDVVSR 402
S RL+ Y+ VKEL+ + +LT QQ++E IIVTTP+ WD+++R
Sbjct: 429 SNRLQHYDVKVKELSGDQSLTRQQIEETQIIVTTPEKWDIITR 471
>ref|XP_003571468.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase
[Brachypodium distachyon]
Length = 2179
Score = 69.3 bits (168), Expect(2) = 1e-19
Identities = 53/137 (38%), Positives = 68/137 (49%), Gaps = 17/137 (12%)
Frame = -1
Query: 399 RTLAQRVSLMIFDEIHLLYDRRGAXXXXXXXEQLNEIRP*KS---TYGWSQSVIVICEYV 229
RT Q V L+I DEIHLL+D RG + +I K G S + + E V
Sbjct: 641 RTYTQMVKLLIIDEIHLLHDNRGPVLESIVSRTVRQIETTKEHIRLVGLS-ATLPNYEDV 699
Query: 228 TSFLQVCPSVGLFYFDNRYMPCQLAQQYI*EI------------SVIG*TLLCEAGEHQV 85
FL+V S GLF+FDN Y PC LAQQYI + ++ AG+HQV
Sbjct: 700 AVFLRV-RSEGLFHFDNSYRPCPLAQQYIGITVRKPLQRFQLMNEICYEKVMAAAGKHQV 758
Query: 84 LIFVHSK--TVRTTNLV 40
LIFVHS+ T +T +
Sbjct: 759 LIFVHSRKETAKTARAI 775
Score = 52.0 bits (123), Expect(2) = 1e-19
Identities = 23/43 (53%), Positives = 32/43 (74%)
Frame = -2
Query: 530 SIRLRDYNFLVKELNWNHTLTCQQLQEAHIIVTTPDIWDVVSR 402
S RL+D+N V+EL+ + LT QQ+ E IIVTTP+ WD+V+R
Sbjct: 594 SARLKDFNVTVRELSGDQNLTKQQIDETQIIVTTPEKWDIVTR 636
>ref|XP_002451361.1| hypothetical protein SORBIDRAFT_04g000670 [Sorghum bicolor]
gi|241931192|gb|EES04337.1| hypothetical protein
SORBIDRAFT_04g000670 [Sorghum bicolor]
Length = 2173
Score = 70.5 bits (171), Expect(2) = 3e-19
Identities = 51/127 (40%), Positives = 63/127 (49%), Gaps = 15/127 (11%)
Frame = -1
Query: 399 RTLAQRVSLMIFDEIHLLYDRRGAXXXXXXXEQLNEIRP*KS---TYGWSQSVIVICEYV 229
RT Q V L+I DEIHLL+D RG + +I K G S + + E V
Sbjct: 635 RTYTQMVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS-ATLPNYEDV 693
Query: 228 TSFLQVCPSVGLFYFDNRYMPCQLAQQYI*EI------------SVIG*TLLCEAGEHQV 85
FL+V P LFYFDN Y PC LAQQYI + ++ AG+HQV
Sbjct: 694 ALFLRV-PKESLFYFDNSYRPCPLAQQYIGITVRKPVQRMPLMNEICYEKVMAAAGKHQV 752
Query: 84 LIFVHSK 64
LIFVHS+
Sbjct: 753 LIFVHSR 759
Score = 49.7 bits (117), Expect(2) = 3e-19
Identities = 23/43 (53%), Positives = 30/43 (69%)
Frame = -2
Query: 530 SIRLRDYNFLVKELNWNHTLTCQQLQEAHIIVTTPDIWDVVSR 402
S RL YN VKEL+ + LT QQ+ E +IVTTP+ WD+V+R
Sbjct: 588 SKRLAGYNVTVKELSGDQNLTKQQIDETQVIVTTPEKWDIVTR 630
>ref|XP_003595992.1| U5 small nuclear ribonucleoprotein 200 kDa helicase [Medicago
truncatula] gi|355485040|gb|AES66243.1| U5 small nuclear
ribonucleoprotein 200 kDa helicase [Medicago truncatula]
Length = 2223
Score = 66.6 bits (161), Expect(2) = 3e-19
Identities = 52/137 (37%), Positives = 67/137 (48%), Gaps = 17/137 (12%)
Frame = -1
Query: 399 RTLAQRVSLMIFDEIHLLYDRRGAXXXXXXXEQLNEIRP*KS---TYGWSQSVIVICEYV 229
RT Q V L+I DEIHLL+D RG + +I K G S + + E V
Sbjct: 647 RTYTQLVKLVIIDEIHLLHDNRGPVLESIVARTVRQIETSKDYIRLVGLS-ATLPNYEDV 705
Query: 228 TSFLQVCPSVGLFYFDNRYMPCQLAQQYI*EI------------SVIG*TLLCEAGEHQV 85
FL+V + GLFYFDN Y P L+QQYI + +L AG+HQV
Sbjct: 706 ALFLRVDLNKGLFYFDNSYRPVPLSQQYIGITIKKPLQRFQLMNDICYRKVLDVAGKHQV 765
Query: 84 LIFVHSK--TVRTTNLV 40
LIFVHS+ T +T +
Sbjct: 766 LIFVHSRKETAKTARAI 782
Score = 53.1 bits (126), Expect(2) = 3e-19
Identities = 23/43 (53%), Positives = 34/43 (79%)
Frame = -2
Query: 530 SIRLRDYNFLVKELNWNHTLTCQQLQEAHIIVTTPDIWDVVSR 402
S RL+DYN V+EL+ + +LT QQ++E IIVTTP+ WD+++R
Sbjct: 600 SNRLQDYNVTVRELSGDQSLTRQQIEETQIIVTTPEKWDIITR 642
>ref|XP_002266580.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Vitis
vinifera]
Length = 2177
Score = 70.1 bits (170), Expect(2) = 4e-19
Identities = 53/137 (38%), Positives = 67/137 (48%), Gaps = 17/137 (12%)
Frame = -1
Query: 399 RTLAQRVSLMIFDEIHLLYDRRGAXXXXXXXEQLNEIRP*KS---TYGWSQSVIVICEYV 229
RT Q V L+I DEIHLL+D RG + +I K G S + + E V
Sbjct: 634 RTYTQLVKLLIVDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS-ATLPNYEDV 692
Query: 228 TSFLQVCPSVGLFYFDNRYMPCQLAQQYI*EI------------SVIG*TLLCEAGEHQV 85
FL+V GLF+FDN Y PC LAQQYI V ++ AG+HQV
Sbjct: 693 ALFLRVDLKKGLFHFDNSYRPCPLAQQYIGITVKKPLQRFQLMNDVCYEKVMAVAGKHQV 752
Query: 84 LIFVHSK--TVRTTNLV 40
LIFVHS+ T +T +
Sbjct: 753 LIFVHSRKETAKTARAI 769
Score = 49.3 bits (116), Expect(2) = 4e-19
Identities = 22/43 (51%), Positives = 33/43 (76%)
Frame = -2
Query: 530 SIRLRDYNFLVKELNWNHTLTCQQLQEAHIIVTTPDIWDVVSR 402
S RL+ Y+ VKEL+ + +LT QQ++E IIVTTP+ WD+++R
Sbjct: 587 SNRLQHYDVKVKELSGDQSLTRQQIEETQIIVTTPEKWDIITR 629