BLASTX nr result

ID: Coptis25_contig00033925 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00033925
         (342 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003548375.1| PREDICTED: ABC transporter B family member 1...    91   1e-16
ref|XP_002331205.1| multidrug/pheromone exporter, MDR family, AB...    89   3e-16
ref|XP_002529182.1| multidrug resistance protein 1, 2, putative ...    88   8e-16
ref|XP_003632759.1| PREDICTED: ABC transporter B family member 1...    87   1e-15
ref|XP_004155963.1| PREDICTED: ABC transporter B family member 1...    87   2e-15

>ref|XP_003548375.1| PREDICTED: ABC transporter B family member 19-like [Glycine max]
          Length = 1515

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 51/104 (49%), Positives = 62/104 (59%), Gaps = 6/104 (5%)
 Frame = -3

Query: 340 GSRHYKS----TYDQHSIT--GGHDDKGRSMGHHYDSGLXXXXXXXXDMESGRGTKSVGL 179
           GS+ Y+S    TY  H I     +D++G                   D E  R  K+VG+
Sbjct: 237 GSQIYRSGGDYTYSHHDIEKLSAYDEEGEE---------------DMDEEDARPPKTVGI 281

Query: 178 LGLFKYSSKFDMILVFFGCLGALINGGSLPWYSYLFGDFVNKIA 47
             LFKYS+K D++LVF GCLGALINGGSLPWYSYLFGD VNKI+
Sbjct: 282 FSLFKYSTKLDLVLVFVGCLGALINGGSLPWYSYLFGDVVNKIS 325


>ref|XP_002331205.1| multidrug/pheromone exporter, MDR family, ABC transporter family
           [Populus trichocarpa] gi|222873326|gb|EEF10457.1|
           multidrug/pheromone exporter, MDR family, ABC
           transporter family [Populus trichocarpa]
          Length = 1547

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 39/49 (79%), Positives = 44/49 (89%)
 Frame = -3

Query: 193 KSVGLLGLFKYSSKFDMILVFFGCLGALINGGSLPWYSYLFGDFVNKIA 47
           + VGL  LFKYS+K+DM+LVF GCLGALINGGSLPWYSY FGDFVN+IA
Sbjct: 319 RQVGLFSLFKYSTKWDMVLVFLGCLGALINGGSLPWYSYFFGDFVNRIA 367


>ref|XP_002529182.1| multidrug resistance protein 1, 2, putative [Ricinus communis]
           gi|223531360|gb|EEF33196.1| multidrug resistance protein
           1, 2, putative [Ricinus communis]
          Length = 1580

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 38/49 (77%), Positives = 45/49 (91%)
 Frame = -3

Query: 193 KSVGLLGLFKYSSKFDMILVFFGCLGALINGGSLPWYSYLFGDFVNKIA 47
           + VGL GLFKYS+K+D++LV  GCLGALINGG+LPWYS+LFGDFVNKIA
Sbjct: 348 RQVGLFGLFKYSTKWDIVLVILGCLGALINGGALPWYSFLFGDFVNKIA 396


>ref|XP_003632759.1| PREDICTED: ABC transporter B family member 19-like [Vitis vinifera]
          Length = 1542

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 48/104 (46%), Positives = 57/104 (54%), Gaps = 17/104 (16%)
 Frame = -3

Query: 307 HSITGGHDDKG---------RSMGHHYDSGLXXXXXXXXDM--------ESGRGTKSVGL 179
           H   GGH   G         +S  HHYD+                    + G   +SVGL
Sbjct: 252 HHHDGGHGHHGHGYHDHGVWKSTSHHYDTDEGYNDNDQDSAYDEDEDDEDDGMAPRSVGL 311

Query: 178 LGLFKYSSKFDMILVFFGCLGALINGGSLPWYSYLFGDFVNKIA 47
             LF+YS+K D++LV  GCLGALINGGSLPWYS LFG+FVNKIA
Sbjct: 312 FSLFRYSTKSDILLVILGCLGALINGGSLPWYSLLFGNFVNKIA 355


>ref|XP_004155963.1| PREDICTED: ABC transporter B family member 19-like [Cucumis
           sativus]
          Length = 1450

 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 37/50 (74%), Positives = 45/50 (90%)
 Frame = -3

Query: 193 KSVGLLGLFKYSSKFDMILVFFGCLGALINGGSLPWYSYLFGDFVNKIAT 44
           K+VGL  LFKYS+K D++L+  GCLGALINGGSLPWYSYLFG+FVN++AT
Sbjct: 224 KAVGLFSLFKYSTKLDLLLIILGCLGALINGGSLPWYSYLFGNFVNQLAT 273


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