BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00033924
         (562 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI32919.3| unnamed protein product [Vitis vinifera]               94   1e-17
ref|XP_002520241.1| conserved hypothetical protein [Ricinus comm...    87   2e-15
ref|XP_002319944.1| f-box family protein [Populus trichocarpa] g...    87   2e-15
ref|XP_003617104.1| F-box family-9 [Medicago truncatula] gi|3555...    83   3e-14
ref|NP_568800.1| F-box/FBD/LRR-repeat protein [Arabidopsis thali...    83   3e-14

>emb|CBI32919.3| unnamed protein product [Vitis vinifera]
          Length = 411

 Score = 94.4 bits (233), Expect = 1e-17
 Identities = 59/143 (41%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
 Frame = -2

Query: 519 DRLGTLPDNVLHEIFSLLDMKYAVQASIYGLRWRDLWVSLPTLNFDSRIINERKPKAG-- 346
           DR+  LPD VL  I S L  K+AV  S+   RWR LW S+P L+FD  ++ +R    G  
Sbjct: 10  DRISNLPDAVLCHIISFLPTKFAVGTSVLSKRWRYLWASIPNLDFDDDLLLDRDKPIGDS 69

Query: 345 -RKSHFEKFVNVVFIQHDTSDIQKLRLFYNDKYEISPKCICSWIRGSIRRNIQELDIDMP 169
            R   F+ FV+ V +    S I+K RL  +D +E+    + SWI  ++ RN+QELD+   
Sbjct: 70  ERSICFKNFVDKVLLHGSISCIRKFRLKCSD-HELD-SAVNSWICTALERNVQELDLYF- 126

Query: 168 DTVCLFEFPTGLFTCETLKVLKL 100
           DT    E P   F C+TL VLKL
Sbjct: 127 DTEYPIELPPKFFFCKTLVVLKL 149


>ref|XP_002520241.1| conserved hypothetical protein [Ricinus communis]
           gi|223540587|gb|EEF42153.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 193

 Score = 87.0 bits (214), Expect = 2e-15
 Identities = 60/172 (34%), Positives = 87/172 (50%), Gaps = 3/172 (1%)
 Frame = -2

Query: 546 AKKVKHDQEDRLGTLPDNVLHEIFSLLDMKYAVQASIYGLRWRDLWVSLPTLNFDSRIIN 367
           A K +   +DR+  LP+ +L  I S LD   AV++SI    WR  W S+  L     +  
Sbjct: 4   ASKRQRANDDRISGLPEPILCHILSSLDTVDAVKSSILSRIWRHNWTSVADLKIHDSLCP 63

Query: 366 ERKPKAGRKSHFEKFV---NVVFIQHDTSDIQKLRLFYNDKYEISPKCICSWIRGSIRRN 196
            R+ K  + +H + FV   N V + H    I++L L  N+ Y  S   I SWI  ++  N
Sbjct: 64  NRRSKRAKLAHMKSFVDLLNRVLMLHKHPYIERLSLTLNNAYSTSD--INSWILVAVTHN 121

Query: 195 IQELDIDMPDTVCLFEFPTGLFTCETLKVLKLKFEKGEPHIRHNLKFLNLIS 40
           ++EL + + +  C  + P  LFTCE+LKVLKL           +LKFL L S
Sbjct: 122 VEELALSIRNE-CTLQLPKILFTCESLKVLKLDSR------IESLKFLKLNS 166


>ref|XP_002319944.1| f-box family protein [Populus trichocarpa]
           gi|222858320|gb|EEE95867.1| f-box family protein
           [Populus trichocarpa]
          Length = 511

 Score = 87.0 bits (214), Expect = 2e-15
 Identities = 64/175 (36%), Positives = 90/175 (51%), Gaps = 6/175 (3%)
 Frame = -2

Query: 519 DRLGTLPDNVLHEIFSLLDMKYAVQASIYGLRWRDLWVSLPTLNF-----DSRIINERKP 355
           DR+  LPD +LH I  LL +K   Q S+   RWR LW S P L+F        I + RK 
Sbjct: 24  DRISDLPDAILHHILLLLPLKSIAQTSVLSQRWRSLWSSFPDLDFTTMNPSKAICSTRKL 83

Query: 354 KAGRKSHFEKFV-NVVFIQHDTSDIQKLRLFYNDKYEISPKCICSWIRGSIRRNIQELDI 178
           K+ R      F+ NV+ ++   SD++ LR     +  +S   +   IR +IR N+QELD+
Sbjct: 84  KSKRWWPSMDFIANVLALRDKHSDLRALRF----RAHLSFSHLNGLIRRAIRCNVQELDV 139

Query: 177 DMPDTVCLFEFPTGLFTCETLKVLKLKFEKGEPHIRHNLKFLNLISLPLLETLHL 13
           ++  T   F FP G+ T E+L+VLKL+     P  R     +  I  P L TL L
Sbjct: 140 EVA-TGDYFNFPRGVITSESLRVLKLR--SRYPGFRLLPSSVMTIGFPSLHTLSL 191


>ref|XP_003617104.1| F-box family-9 [Medicago truncatula] gi|355518439|gb|AET00063.1|
           F-box family-9 [Medicago truncatula]
          Length = 402

 Score = 83.2 bits (204), Expect = 3e-14
 Identities = 68/187 (36%), Positives = 93/187 (49%), Gaps = 4/187 (2%)
 Frame = -2

Query: 552 PMAKKVKHDQ---EDRLGTLPDNVLHEIFSLLDMKYAVQASIYGLRWRDLWVSLPTLNFD 382
           P  K+VK D+   EDRL  LPD V+  I S L+ K AV  SI  LRWRDLW  LP L  D
Sbjct: 12  PATKRVKLDESENEDRLSDLPDCVILHILSFLNAKQAVTTSILSLRWRDLWKLLPALILD 71

Query: 381 SRIINERKPKAGRKSHFEKFVNVVFIQHDTS-DIQKLRLFYNDKYEISPKCICSWIRGSI 205
           S               F KFV+ V    D+S  +  L   +N      P+ I S +  +I
Sbjct: 72  SSDFR-------TIPIFNKFVHRVLTLRDSSLALNSLNFRHN-----QPRIIKSVVNYAI 119

Query: 204 RRNIQELDIDMPDTVCLFEFPTGLFTCETLKVLKLKFEKGEPHIRHNLKFLNLISLPLLE 25
             NIQ L + +   +   + P  +F+C+TL  L+L F  GE  +     F   ++LP L 
Sbjct: 120 SHNIQRLRLYVGCHIA--QIPPSVFSCQTLTHLELYF--GEQTL-----FPKSLNLPSLT 170

Query: 24  TLHLKSF 4
           +L+LK+F
Sbjct: 171 SLYLKNF 177


>ref|NP_568800.1| F-box/FBD/LRR-repeat protein [Arabidopsis thaliana]
           gi|75333820|sp|Q9FGQ3.1|FDL37_ARATH RecName:
           Full=F-box/FBD/LRR-repeat protein At5g53840
           gi|10176949|dbj|BAB10069.1| unnamed protein product
           [Arabidopsis thaliana] gi|67633880|gb|AAY78864.1| F-box
           family protein [Arabidopsis thaliana]
           gi|332009029|gb|AED96412.1| F-box/FBD/LRR-repeat protein
           [Arabidopsis thaliana]
          Length = 444

 Score = 83.2 bits (204), Expect = 3e-14
 Identities = 61/171 (35%), Positives = 81/171 (47%)
 Frame = -2

Query: 525 QEDRLGTLPDNVLHEIFSLLDMKYAVQASIYGLRWRDLWVSLPTLNFDSRIINERKPKAG 346
           +E+RL  LPD+++  I S L  K AV+ SI   RWR+LW  +P L+FDSR +        
Sbjct: 16  EEERLSQLPDHLICVILSHLSTKDAVRTSILSTRWRNLWQLVPVLDFDSRELRS------ 69

Query: 345 RKSHFEKFVNVVFIQHDTSDIQKLRLFYNDKYEISPKCICSWIRGSIRRNIQELDIDMPD 166
             S F  F    F  H  S IQKLR+   D        + SWI    R  IQ +DI +  
Sbjct: 70  -FSEFVSFAGSFFYLHKDSYIQKLRVCIYDL--AGNYYLTSWIDLVTRHRIQHIDISVFT 126

Query: 165 TVCLFEFPTGLFTCETLKVLKLKFEKGEPHIRHNLKFLNLISLPLLETLHL 13
                  P  L+TC+TL  LKL         R  +  +  +SLP L+ L L
Sbjct: 127 CSGFGVIPLSLYTCDTLVHLKLS--------RVTMVNVEFVSLPCLKILDL 169