BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00033860
         (334 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulga...    80   2e-13
gb|ABD64923.1| hypothetical protein 24.t00067 [Brassica oleracea]      71   8e-11
dbj|BAF01759.1| putative non-LTR retroelement reverse transcript...    71   8e-11
gb|AAD17398.1| putative non-LTR retroelement reverse transcripta...    71   8e-11
emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulga...    70   2e-10

>emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1389

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 38/86 (44%), Positives = 57/86 (66%)
 Frame = -3

Query: 260 DNYDATREVTIEEIRDALFSMDPHKASGPDGFTPLFYQKYWDGIIHLNLLHMVKSFMNSD 81
           DN   T  V+ EEI++A+F + P K+ GPDGF P F+QKYW  +I  ++   V++F +S 
Sbjct: 436 DNAYLTSAVSPEEIKNAVFDLAPDKSPGPDGFPPYFFQKYWT-LIGKSVCRAVQAFFHSG 494

Query: 80  HLLRELNHTNITLIPKIQGLENLNQF 3
           ++L+E+NHT + LIPK+    N N F
Sbjct: 495 YMLKEVNHTFLALIPKVDKPVNANHF 520


>gb|ABD64923.1| hypothetical protein 24.t00067 [Brassica oleracea]
          Length = 381

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 35/81 (43%), Positives = 50/81 (61%)
 Frame = -3

Query: 245 TREVTIEEIRDALFSMDPHKASGPDGFTPLFYQKYWDGIIHLNLLHMVKSFMNSDHLLRE 66
           +R+VT EE+R ++FS+   +A GPDG T  FYQ YWD I+   ++  V+ F N+     +
Sbjct: 227 SRDVTAEEVRISVFSIGATRAPGPDGLTASFYQTYWD-IVGPAVVEEVRHFFNTGEFYSD 285

Query: 65  LNHTNITLIPKIQGLENLNQF 3
           LNHTN+ LIPKI     +  F
Sbjct: 286 LNHTNLCLIPKITNPITMKDF 306


>dbj|BAF01759.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 400

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 35/85 (41%), Positives = 53/85 (62%)
 Frame = -3

Query: 257 NYDATREVTIEEIRDALFSMDPHKASGPDGFTPLFYQKYWDGIIHLNLLHMVKSFMNSDH 78
           N   T+ ++ EE++ ALFS++P KA GPDG T  FYQ YWD +   +L+ +V++F ++  
Sbjct: 2   NKSLTKVISPEEVKRALFSLNPDKAPGPDGMTAFFYQHYWD-LTGPDLIKLVQNFHSTGF 60

Query: 77  LLRELNHTNITLIPKIQGLENLNQF 3
               LN TNI LIPK +    + +F
Sbjct: 61  FDERLNETNICLIPKTERPRKMAEF 85


>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1225

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 35/85 (41%), Positives = 53/85 (62%)
 Frame = -3

Query: 257 NYDATREVTIEEIRDALFSMDPHKASGPDGFTPLFYQKYWDGIIHLNLLHMVKSFMNSDH 78
           N   T+ ++ EE++ ALFS++P KA GPDG T  FYQ YWD +   +L+ +V++F ++  
Sbjct: 368 NKSLTKVISPEEVKRALFSLNPDKAPGPDGMTAFFYQHYWD-LTGPDLIKLVQNFHSTGF 426

Query: 77  LLRELNHTNITLIPKIQGLENLNQF 3
               LN TNI LIPK +    + +F
Sbjct: 427 FDERLNETNICLIPKTERPRKMAEF 451


>emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1365

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 35/83 (42%), Positives = 50/83 (60%)
 Frame = -3

Query: 251 DATREVTIEEIRDALFSMDPHKASGPDGFTPLFYQKYWDGIIHLNLLHMVKSFMNSDHLL 72
           D  + VT EE+R+ +F M   KA GPDG   +FYQK+W  I+  ++   V  F  + ++L
Sbjct: 436 DLIKPVTREEVRNVVFQMGSLKAPGPDGIPAIFYQKHW-SIVGEDIWRAVSHFFTTGYIL 494

Query: 71  RELNHTNITLIPKIQGLENLNQF 3
           +E N TNI LIPK++  E   QF
Sbjct: 495 QEWNQTNICLIPKVERPEQACQF 517