BLASTX nr result

ID: Coptis25_contig00033833 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00033833
         (349 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002510111.1| conserved hypothetical protein [Ricinus comm...    73   2e-11
ref|XP_002320697.1| predicted protein [Populus trichocarpa] gi|2...    69   4e-10
emb|CBI19417.3| unnamed protein product [Vitis vinifera]               64   2e-08
ref|XP_002283295.1| PREDICTED: uncharacterized protein LOC100242...    64   2e-08
ref|NP_001236322.1| uncharacterized protein LOC100527200 precurs...    62   5e-08

>ref|XP_002510111.1| conserved hypothetical protein [Ricinus communis]
           gi|223550812|gb|EEF52298.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 120

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 39/61 (63%), Positives = 46/61 (75%), Gaps = 2/61 (3%)
 Frame = +3

Query: 69  LITLIHSRKLKES-FDPSTKRKSHTDL-NLEDYRPIDPVPSSKATIKPKPIAHGSPLMPY 242
           LI    SRKLKE+ + PST +K  T L NL+DY PIDPVPSSKA+IKP PI HG+PL P+
Sbjct: 45  LIMTATSRKLKENNYYPSTDKKGDTSLLNLDDYHPIDPVPSSKASIKPGPIEHGTPLNPF 104

Query: 243 I 245
           I
Sbjct: 105 I 105


>ref|XP_002320697.1| predicted protein [Populus trichocarpa] gi|222861470|gb|EEE99012.1|
           predicted protein [Populus trichocarpa]
          Length = 112

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 38/65 (58%), Positives = 47/65 (72%), Gaps = 3/65 (4%)
 Frame = +3

Query: 60  SVTLITLIHSRKLKES---FDPSTKRKSHTDLNLEDYRPIDPVPSSKATIKPKPIAHGSP 230
           S+T+ T   SRKLKE+    +   K  +H ++NLEDY PIDPVPSSKA+IKP PI HG+P
Sbjct: 26  SMTMATT--SRKLKENGYDLNDDVKTNAH-NVNLEDYHPIDPVPSSKASIKPGPIEHGTP 82

Query: 231 LMPYI 245
           L PYI
Sbjct: 83  LNPYI 87


>emb|CBI19417.3| unnamed protein product [Vitis vinifera]
          Length = 117

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 34/57 (59%), Positives = 41/57 (71%), Gaps = 4/57 (7%)
 Frame = +3

Query: 87  SRKLK----ESFDPSTKRKSHTDLNLEDYRPIDPVPSSKATIKPKPIAHGSPLMPYI 245
           SRKLK    E    + K+    ++NLEDY PIDPVPSSKA+IKP PI HG+PL+PYI
Sbjct: 46  SRKLKVNGYEHNLGTDKKIIAGNVNLEDYHPIDPVPSSKASIKPGPIQHGTPLIPYI 102


>ref|XP_002283295.1| PREDICTED: uncharacterized protein LOC100242050 [Vitis vinifera]
          Length = 743

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 34/57 (59%), Positives = 41/57 (71%), Gaps = 4/57 (7%)
 Frame = +3

Query: 87  SRKLK----ESFDPSTKRKSHTDLNLEDYRPIDPVPSSKATIKPKPIAHGSPLMPYI 245
           SRKLK    E    + K+    ++NLEDY PIDPVPSSKA+IKP PI HG+PL+PYI
Sbjct: 16  SRKLKVNGYEHNLGTDKKIIAGNVNLEDYHPIDPVPSSKASIKPGPIQHGTPLIPYI 72


>ref|NP_001236322.1| uncharacterized protein LOC100527200 precursor [Glycine max]
           gi|255631770|gb|ACU16252.1| unknown [Glycine max]
          Length = 124

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 37/69 (53%), Positives = 44/69 (63%), Gaps = 6/69 (8%)
 Frame = +3

Query: 57  DSVTLITLIHSRKLKESFDPSTKRKSHT-----DLNLEDYRPIDPVPSS-KATIKPKPIA 218
           D  TLI +  SRKLKES   + K +S+       + L DY PIDPVPSS KA+I P PI 
Sbjct: 42  DKATLIAV--SRKLKESDSGTIKSRSNNKGDIGQVTLNDYNPIDPVPSSSKASINPGPIE 99

Query: 219 HGSPLMPYI 245
           HG+PL PYI
Sbjct: 100 HGTPLNPYI 108


Top