BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00033827
         (520 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278166.1| PREDICTED: pentatricopeptide repeat-containi...   128   4e-28
emb|CAN82226.1| hypothetical protein VITISV_011875 [Vitis vinifera]   127   7e-28
ref|XP_004160350.1| PREDICTED: pentatricopeptide repeat-containi...   116   2e-24
ref|XP_004137884.1| PREDICTED: pentatricopeptide repeat-containi...   116   2e-24
ref|XP_002512699.1| pentatricopeptide repeat-containing protein,...   115   3e-24

>ref|XP_002278166.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 662

 Score =  128 bits (322), Expect = 4e-28
 Identities = 60/101 (59%), Positives = 79/101 (78%), Gaps = 2/101 (1%)
 Frame = -2

Query: 297 RVLDEIPHTDTFAWNCIIQAHLSNADLHLALLVYPQMLLRGVRPDKHTLPRLLTASR--Q 124
           ++ DEIP ++TFAWN +IQ HL+N D    +  Y QMLLRGVRPDKHT+PR+LTA+R   
Sbjct: 48  QLFDEIPVSNTFAWNNLIQTHLTNGDSDRVVSTYRQMLLRGVRPDKHTIPRILTAARHTS 107

Query: 123 AFFVGKQIHGHALKLGFSSDKYVVTALMALYGHFDGAHAAR 1
           +F  GKQ+HGHALKLG SS+ YV++AL+ +YG  DGA+AA+
Sbjct: 108 SFSFGKQVHGHALKLGLSSESYVISALLEMYGRLDGANAAK 148


>emb|CAN82226.1| hypothetical protein VITISV_011875 [Vitis vinifera]
          Length = 734

 Score =  127 bits (320), Expect = 7e-28
 Identities = 60/101 (59%), Positives = 78/101 (77%), Gaps = 2/101 (1%)
 Frame = -2

Query: 297 RVLDEIPHTDTFAWNCIIQAHLSNADLHLALLVYPQMLLRGVRPDKHTLPRLLTASR--Q 124
           ++ DEIP ++TFAWN +IQ HL+N D    +  Y QMLLRGVRPDKHT+PR+LTA+R   
Sbjct: 143 QLFDEIPVSNTFAWNNLIQTHLTNGDSGRVVSTYRQMLLRGVRPDKHTIPRILTAARHTS 202

Query: 123 AFFVGKQIHGHALKLGFSSDKYVVTALMALYGHFDGAHAAR 1
           +F  GKQ+HGHALKLG SS+ YV++AL+ +YG  DGA AA+
Sbjct: 203 SFSFGKQVHGHALKLGLSSESYVISALLEMYGRLDGABAAK 243


>ref|XP_004160350.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 429

 Score =  116 bits (291), Expect = 2e-24
 Identities = 60/107 (56%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
 Frame = -2

Query: 315 NHSTALRVLDEIPHTDTFAWNCIIQAHLSNADLHLALLVYPQMLLRGVRPDKHTLPRLLT 136
           N   A +V D+IP  DTFAWN +IQ HL+N DL   +  Y QML RGVRPDKHTLPR++ 
Sbjct: 8   NLCVAHQVFDDIPIWDTFAWNNLIQTHLTNGDLGHVISTYRQMLFRGVRPDKHTLPRIIC 67

Query: 135 ASRQ--AFFVGKQIHGHALKLGFSSDKYVVTALMALYGHFDGAHAAR 1
           A+RQ     VGKQ+H  A KLGFSS+ YV+T+L+ LYG  D A  A+
Sbjct: 68  ATRQYGDLQVGKQLHAQAFKLGFSSNLYVLTSLIELYGILDSADTAK 114


>ref|XP_004137884.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 629

 Score =  116 bits (291), Expect = 2e-24
 Identities = 60/107 (56%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
 Frame = -2

Query: 315 NHSTALRVLDEIPHTDTFAWNCIIQAHLSNADLHLALLVYPQMLLRGVRPDKHTLPRLLT 136
           N   A +V D+IP  DTFAWN +IQ HL+N DL   +  Y QML RGVRPDKHTLPR++ 
Sbjct: 8   NLCVAHQVFDDIPIWDTFAWNNLIQTHLTNGDLGHVISTYRQMLFRGVRPDKHTLPRIIC 67

Query: 135 ASRQ--AFFVGKQIHGHALKLGFSSDKYVVTALMALYGHFDGAHAAR 1
           A+RQ     VGKQ+H  A KLGFSS+ YV+T+L+ LYG  D A  A+
Sbjct: 68  ATRQYGDLQVGKQLHAQAFKLGFSSNLYVLTSLIELYGILDSADTAK 114


>ref|XP_002512699.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548660|gb|EEF50151.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 686

 Score =  115 bits (289), Expect = 3e-24
 Identities = 58/102 (56%), Positives = 72/102 (70%), Gaps = 2/102 (1%)
 Frame = -2

Query: 300 LRVLDEIPHTDTFAWNCIIQAHLSNADLHLALLVYPQMLLRGVRPDKHTLPRLLTASRQA 121
           L+ LDEIP +DTFAWN +I +HL+N D   AL +Y  MLLRG  PD+ T PR+L ASR +
Sbjct: 51  LQPLDEIPLSDTFAWNNLIHSHLTNRDPFSALSIYLHMLLRGALPDRRTFPRVLNASRLS 110

Query: 120 --FFVGKQIHGHALKLGFSSDKYVVTALMALYGHFDGAHAAR 1
              F+GKQIH  ALK GFSSD YV+++L+  YGH D   AAR
Sbjct: 111 TNLFLGKQIHAQALKFGFSSDPYVISSLIDFYGHLDSTDAAR 152