BLASTX nr result
ID: Coptis25_contig00033827
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00033827 (520 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002278166.1| PREDICTED: pentatricopeptide repeat-containi... 128 4e-28 emb|CAN82226.1| hypothetical protein VITISV_011875 [Vitis vinifera] 127 7e-28 ref|XP_004160350.1| PREDICTED: pentatricopeptide repeat-containi... 116 2e-24 ref|XP_004137884.1| PREDICTED: pentatricopeptide repeat-containi... 116 2e-24 ref|XP_002512699.1| pentatricopeptide repeat-containing protein,... 115 3e-24 >ref|XP_002278166.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750, chloroplastic-like [Vitis vinifera] Length = 662 Score = 128 bits (322), Expect = 4e-28 Identities = 60/101 (59%), Positives = 79/101 (78%), Gaps = 2/101 (1%) Frame = -2 Query: 297 RVLDEIPHTDTFAWNCIIQAHLSNADLHLALLVYPQMLLRGVRPDKHTLPRLLTASR--Q 124 ++ DEIP ++TFAWN +IQ HL+N D + Y QMLLRGVRPDKHT+PR+LTA+R Sbjct: 48 QLFDEIPVSNTFAWNNLIQTHLTNGDSDRVVSTYRQMLLRGVRPDKHTIPRILTAARHTS 107 Query: 123 AFFVGKQIHGHALKLGFSSDKYVVTALMALYGHFDGAHAAR 1 +F GKQ+HGHALKLG SS+ YV++AL+ +YG DGA+AA+ Sbjct: 108 SFSFGKQVHGHALKLGLSSESYVISALLEMYGRLDGANAAK 148 >emb|CAN82226.1| hypothetical protein VITISV_011875 [Vitis vinifera] Length = 734 Score = 127 bits (320), Expect = 7e-28 Identities = 60/101 (59%), Positives = 78/101 (77%), Gaps = 2/101 (1%) Frame = -2 Query: 297 RVLDEIPHTDTFAWNCIIQAHLSNADLHLALLVYPQMLLRGVRPDKHTLPRLLTASR--Q 124 ++ DEIP ++TFAWN +IQ HL+N D + Y QMLLRGVRPDKHT+PR+LTA+R Sbjct: 143 QLFDEIPVSNTFAWNNLIQTHLTNGDSGRVVSTYRQMLLRGVRPDKHTIPRILTAARHTS 202 Query: 123 AFFVGKQIHGHALKLGFSSDKYVVTALMALYGHFDGAHAAR 1 +F GKQ+HGHALKLG SS+ YV++AL+ +YG DGA AA+ Sbjct: 203 SFSFGKQVHGHALKLGLSSESYVISALLEMYGRLDGABAAK 243 >ref|XP_004160350.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750, chloroplastic-like [Cucumis sativus] Length = 429 Score = 116 bits (291), Expect = 2e-24 Identities = 60/107 (56%), Positives = 74/107 (69%), Gaps = 2/107 (1%) Frame = -2 Query: 315 NHSTALRVLDEIPHTDTFAWNCIIQAHLSNADLHLALLVYPQMLLRGVRPDKHTLPRLLT 136 N A +V D+IP DTFAWN +IQ HL+N DL + Y QML RGVRPDKHTLPR++ Sbjct: 8 NLCVAHQVFDDIPIWDTFAWNNLIQTHLTNGDLGHVISTYRQMLFRGVRPDKHTLPRIIC 67 Query: 135 ASRQ--AFFVGKQIHGHALKLGFSSDKYVVTALMALYGHFDGAHAAR 1 A+RQ VGKQ+H A KLGFSS+ YV+T+L+ LYG D A A+ Sbjct: 68 ATRQYGDLQVGKQLHAQAFKLGFSSNLYVLTSLIELYGILDSADTAK 114 >ref|XP_004137884.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750, chloroplastic-like [Cucumis sativus] Length = 629 Score = 116 bits (291), Expect = 2e-24 Identities = 60/107 (56%), Positives = 74/107 (69%), Gaps = 2/107 (1%) Frame = -2 Query: 315 NHSTALRVLDEIPHTDTFAWNCIIQAHLSNADLHLALLVYPQMLLRGVRPDKHTLPRLLT 136 N A +V D+IP DTFAWN +IQ HL+N DL + Y QML RGVRPDKHTLPR++ Sbjct: 8 NLCVAHQVFDDIPIWDTFAWNNLIQTHLTNGDLGHVISTYRQMLFRGVRPDKHTLPRIIC 67 Query: 135 ASRQ--AFFVGKQIHGHALKLGFSSDKYVVTALMALYGHFDGAHAAR 1 A+RQ VGKQ+H A KLGFSS+ YV+T+L+ LYG D A A+ Sbjct: 68 ATRQYGDLQVGKQLHAQAFKLGFSSNLYVLTSLIELYGILDSADTAK 114 >ref|XP_002512699.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223548660|gb|EEF50151.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 686 Score = 115 bits (289), Expect = 3e-24 Identities = 58/102 (56%), Positives = 72/102 (70%), Gaps = 2/102 (1%) Frame = -2 Query: 300 LRVLDEIPHTDTFAWNCIIQAHLSNADLHLALLVYPQMLLRGVRPDKHTLPRLLTASRQA 121 L+ LDEIP +DTFAWN +I +HL+N D AL +Y MLLRG PD+ T PR+L ASR + Sbjct: 51 LQPLDEIPLSDTFAWNNLIHSHLTNRDPFSALSIYLHMLLRGALPDRRTFPRVLNASRLS 110 Query: 120 --FFVGKQIHGHALKLGFSSDKYVVTALMALYGHFDGAHAAR 1 F+GKQIH ALK GFSSD YV+++L+ YGH D AAR Sbjct: 111 TNLFLGKQIHAQALKFGFSSDPYVISSLIDFYGHLDSTDAAR 152