BLASTX nr result
ID: Coptis25_contig00033788
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00033788 (1023 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ADD31217.1| RNA polymerase alpha subunit protein [Meliosma af... 78 4e-12 ref|YP_740682.1| RNA polymerase alpha subunit [Nandina domestica... 77 7e-12 gb|AAZ03868.1| RNA polymerase alpha chain [Ranunculus macranthus] 77 9e-12 ref|YP_001004218.1| RNA polymerase alpha subunit [Ranunculus mac... 77 9e-12 ref|YP_004563899.1| RNA polymerase alpha subunit [Nelumbo lutea]... 76 1e-11 >gb|ADD31217.1| RNA polymerase alpha subunit protein [Meliosma aff. cuneifolia Moore 333] Length = 337 Score = 77.8 bits (190), Expect = 4e-12 Identities = 34/38 (89%), Positives = 37/38 (97%) Frame = -3 Query: 139 RMKTPKNAQNGSYPIDIVFMPVRNANHSIHSYGNGNEE 26 RMKTPKN+Q+GSYPID VFMPVRNANHSIHSYGNGNE+ Sbjct: 158 RMKTPKNSQDGSYPIDAVFMPVRNANHSIHSYGNGNEK 195 >ref|YP_740682.1| RNA polymerase alpha subunit [Nandina domestica] gi|122165930|sp|Q09FS9.1|RPOA_NANDO RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit alpha; Short=RNA polymerase subunit alpha gi|114054503|gb|ABI49896.1| RNA polymerase alpha subunit [Nandina domestica] Length = 338 Score = 77.0 bits (188), Expect = 7e-12 Identities = 34/45 (75%), Positives = 38/45 (84%) Frame = -3 Query: 160 MKEQKWIRMKTPKNAQNGSYPIDIVFMPVRNANHSIHSYGNGNEE 26 ++ + RMKTP AQNGSYPID VFMPVRNANHSIHSYGNGNE+ Sbjct: 151 IERNRGYRMKTPNKAQNGSYPIDAVFMPVRNANHSIHSYGNGNEK 195 >gb|AAZ03868.1| RNA polymerase alpha chain [Ranunculus macranthus] Length = 339 Score = 76.6 bits (187), Expect = 9e-12 Identities = 34/44 (77%), Positives = 37/44 (84%) Frame = -3 Query: 160 MKEQKWIRMKTPKNAQNGSYPIDIVFMPVRNANHSIHSYGNGNE 29 ++ + RMKTP NAQ GSYPID VFMPVRNANHSIHSYGNGNE Sbjct: 151 IESNRGYRMKTPNNAQKGSYPIDAVFMPVRNANHSIHSYGNGNE 194 >ref|YP_001004218.1| RNA polymerase alpha subunit [Ranunculus macranthus] gi|158514028|sp|A1XGS0.1|RPOA_RANMC RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit alpha; Short=RNA polymerase subunit alpha gi|85540836|gb|ABC70788.1| RNA polymerase alpha subunit [Ranunculus macranthus] Length = 346 Score = 76.6 bits (187), Expect = 9e-12 Identities = 34/44 (77%), Positives = 37/44 (84%) Frame = -3 Query: 160 MKEQKWIRMKTPKNAQNGSYPIDIVFMPVRNANHSIHSYGNGNE 29 ++ + RMKTP NAQ GSYPID VFMPVRNANHSIHSYGNGNE Sbjct: 151 IESNRGYRMKTPNNAQKGSYPIDAVFMPVRNANHSIHSYGNGNE 194 >ref|YP_004563899.1| RNA polymerase alpha subunit [Nelumbo lutea] gi|224474167|gb|ACN49356.1| RNA polymerase alpha subunit [Nelumbo lutea] gi|383286921|gb|AFH01570.1| RNA polymerase alpha subunit (chloroplast) [Nelumbo lutea] Length = 339 Score = 76.3 bits (186), Expect = 1e-11 Identities = 33/45 (73%), Positives = 39/45 (86%) Frame = -3 Query: 160 MKEQKWIRMKTPKNAQNGSYPIDIVFMPVRNANHSIHSYGNGNEE 26 ++ + RMKTP N+Q+GSYPID VFMPVRNANHSIHSYGNGNE+ Sbjct: 151 IERNRGYRMKTPNNSQDGSYPIDAVFMPVRNANHSIHSYGNGNEK 195