BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00033788
         (1023 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADD31217.1| RNA polymerase alpha subunit protein [Meliosma af...    78   4e-12
ref|YP_740682.1| RNA polymerase alpha subunit [Nandina domestica...    77   7e-12
gb|AAZ03868.1| RNA polymerase alpha chain [Ranunculus macranthus]      77   9e-12
ref|YP_001004218.1| RNA polymerase alpha subunit [Ranunculus mac...    77   9e-12
ref|YP_004563899.1| RNA polymerase alpha subunit [Nelumbo lutea]...    76   1e-11

>gb|ADD31217.1| RNA polymerase alpha subunit protein [Meliosma aff. cuneifolia
           Moore 333]
          Length = 337

 Score = 77.8 bits (190), Expect = 4e-12
 Identities = 34/38 (89%), Positives = 37/38 (97%)
 Frame = -3

Query: 139 RMKTPKNAQNGSYPIDIVFMPVRNANHSIHSYGNGNEE 26
           RMKTPKN+Q+GSYPID VFMPVRNANHSIHSYGNGNE+
Sbjct: 158 RMKTPKNSQDGSYPIDAVFMPVRNANHSIHSYGNGNEK 195


>ref|YP_740682.1| RNA polymerase alpha subunit [Nandina domestica]
           gi|122165930|sp|Q09FS9.1|RPOA_NANDO RecName:
           Full=DNA-directed RNA polymerase subunit alpha;
           Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit alpha; Short=RNA polymerase subunit alpha
           gi|114054503|gb|ABI49896.1| RNA polymerase alpha subunit
           [Nandina domestica]
          Length = 338

 Score = 77.0 bits (188), Expect = 7e-12
 Identities = 34/45 (75%), Positives = 38/45 (84%)
 Frame = -3

Query: 160 MKEQKWIRMKTPKNAQNGSYPIDIVFMPVRNANHSIHSYGNGNEE 26
           ++  +  RMKTP  AQNGSYPID VFMPVRNANHSIHSYGNGNE+
Sbjct: 151 IERNRGYRMKTPNKAQNGSYPIDAVFMPVRNANHSIHSYGNGNEK 195


>gb|AAZ03868.1| RNA polymerase alpha chain [Ranunculus macranthus]
          Length = 339

 Score = 76.6 bits (187), Expect = 9e-12
 Identities = 34/44 (77%), Positives = 37/44 (84%)
 Frame = -3

Query: 160 MKEQKWIRMKTPKNAQNGSYPIDIVFMPVRNANHSIHSYGNGNE 29
           ++  +  RMKTP NAQ GSYPID VFMPVRNANHSIHSYGNGNE
Sbjct: 151 IESNRGYRMKTPNNAQKGSYPIDAVFMPVRNANHSIHSYGNGNE 194


>ref|YP_001004218.1| RNA polymerase alpha subunit [Ranunculus macranthus]
           gi|158514028|sp|A1XGS0.1|RPOA_RANMC RecName:
           Full=DNA-directed RNA polymerase subunit alpha;
           Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit alpha; Short=RNA polymerase subunit alpha
           gi|85540836|gb|ABC70788.1| RNA polymerase alpha subunit
           [Ranunculus macranthus]
          Length = 346

 Score = 76.6 bits (187), Expect = 9e-12
 Identities = 34/44 (77%), Positives = 37/44 (84%)
 Frame = -3

Query: 160 MKEQKWIRMKTPKNAQNGSYPIDIVFMPVRNANHSIHSYGNGNE 29
           ++  +  RMKTP NAQ GSYPID VFMPVRNANHSIHSYGNGNE
Sbjct: 151 IESNRGYRMKTPNNAQKGSYPIDAVFMPVRNANHSIHSYGNGNE 194


>ref|YP_004563899.1| RNA polymerase alpha subunit [Nelumbo lutea]
           gi|224474167|gb|ACN49356.1| RNA polymerase alpha subunit
           [Nelumbo lutea] gi|383286921|gb|AFH01570.1| RNA
           polymerase alpha subunit (chloroplast) [Nelumbo lutea]
          Length = 339

 Score = 76.3 bits (186), Expect = 1e-11
 Identities = 33/45 (73%), Positives = 39/45 (86%)
 Frame = -3

Query: 160 MKEQKWIRMKTPKNAQNGSYPIDIVFMPVRNANHSIHSYGNGNEE 26
           ++  +  RMKTP N+Q+GSYPID VFMPVRNANHSIHSYGNGNE+
Sbjct: 151 IERNRGYRMKTPNNSQDGSYPIDAVFMPVRNANHSIHSYGNGNEK 195