BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00033687
         (336 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_174474.1| pentatricopeptide repeat-containing protein [Ar...    75   4e-12
dbj|BAE98745.1| hypothetical protein [Arabidopsis thaliana]            75   4e-12
ref|XP_002526706.1| pentatricopeptide repeat-containing protein,...    74   1e-11
ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago ...    72   4e-11
ref|XP_002893694.1| pentatricopeptide repeat-containing protein ...    72   6e-11

>ref|NP_174474.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75169173|sp|Q9C6T2.1|PPR68_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g31920 gi|12321292|gb|AAG50713.1|AC079041_6
           PPR-repeat protein, putative [Arabidopsis thaliana]
           gi|332193295|gb|AEE31416.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 39/82 (47%), Positives = 49/82 (59%)
 Frame = -1

Query: 246 NSLIKDLVQKCHFSEALEHYTERWNAGFRPDNFTYPYILKATTQLKDQTMGHLIHNTVIK 67
           N++I+  V    F EAL  Y E    G  PDNFTYP +LKA T+LK    G  IH  V K
Sbjct: 101 NTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFK 160

Query: 66  TGFESNLFVANSLILFYGQLGK 1
            G E+++FV NSLI  YG+ G+
Sbjct: 161 LGLEADVFVQNSLINMYGRCGE 182


>dbj|BAE98745.1| hypothetical protein [Arabidopsis thaliana]
          Length = 527

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 39/82 (47%), Positives = 49/82 (59%)
 Frame = -1

Query: 246 NSLIKDLVQKCHFSEALEHYTERWNAGFRPDNFTYPYILKATTQLKDQTMGHLIHNTVIK 67
           N++I+  V    F EAL  Y E    G  PDNFTYP +LKA T+LK    G  IH  V K
Sbjct: 101 NTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFK 160

Query: 66  TGFESNLFVANSLILFYGQLGK 1
            G E+++FV NSLI  YG+ G+
Sbjct: 161 LGLEADVFVQNSLINMYGRCGE 182


>ref|XP_002526706.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223534006|gb|EEF35728.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 461

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 33/81 (40%), Positives = 52/81 (64%)
 Frame = -1

Query: 246 NSLIKDLVQKCHFSEALEHYTERWNAGFRPDNFTYPYILKATTQLKDQTMGHLIHNTVIK 67
           N++I+ LV    F+E++E Y      GF P+NFT+P+++KA  +L D  +G ++H  V+K
Sbjct: 83  NTMIRGLVSSDCFTESIEFYYSMRKKGFLPNNFTFPFVIKACARLLDFQLGIMMHTLVVK 142

Query: 66  TGFESNLFVANSLILFYGQLG 4
            GF+ NLFV  SL+  Y + G
Sbjct: 143 LGFDCNLFVNTSLVSLYAKCG 163


>ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
           gi|355522693|gb|AET03147.1| hypothetical protein
           MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 35/81 (43%), Positives = 48/81 (59%)
 Frame = -1

Query: 246 NSLIKDLVQKCHFSEALEHYTERWNAGFRPDNFTYPYILKATTQLKDQTMGHLIHNTVIK 67
           N +I+  V    + + L  + E  N GFRPDN+TYP +LKA +  ++   G LIH  V+K
Sbjct: 88  NVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLK 147

Query: 66  TGFESNLFVANSLILFYGQLG 4
            G + NLFV N LI  YG+ G
Sbjct: 148 VGLDFNLFVGNGLIAMYGKCG 168


>ref|XP_002893694.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297339536|gb|EFH69953.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 607

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 37/81 (45%), Positives = 48/81 (59%)
 Frame = -1

Query: 243 SLIKDLVQKCHFSEALEHYTERWNAGFRPDNFTYPYILKATTQLKDQTMGHLIHNTVIKT 64
           ++I+  V +  F  AL  Y E    G  PDNFTYP +LKA T+LK    G  IH  V K 
Sbjct: 103 TMIRGYVNEMSFEVALCFYNEMMERGIEPDNFTYPCLLKACTRLKAIREGKQIHGHVFKL 162

Query: 63  GFESNLFVANSLILFYGQLGK 1
           G E+++FV NSLI  YG+ G+
Sbjct: 163 GLEADVFVQNSLINMYGRCGE 183