BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00033594
         (234 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAC87848.1| thylakoid structural protein [Coptis laciniata]       167   1e-39
ref|YP_007353792.1| PSII 47 kDa protein (chloroplast) [Chrysanth...   165   3e-39
gb|ADM63284.1| photosystem II cp47 protein [Patrinia triloba]         165   3e-39
ref|YP_002836116.1| photosystem II CP47 chlorophyll apoprotein [...   165   3e-39
ref|YP_001004212.1| photosystem II CP47 chlorophyll apoprotein [...   165   3e-39

>emb|CAC87848.1| thylakoid structural protein [Coptis laciniata]
          Length = 451

 Score =  167 bits (422), Expect = 1e-39
 Identities = 77/77 (100%), Positives = 77/77 (100%)
 Frame = +3

Query: 3   RLLAVHIMHTALVSGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGG 182
           RLLAVHIMHTALVSGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGG
Sbjct: 8   RLLAVHIMHTALVSGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGG 67

Query: 183 WSITGGAITNPGIWSYE 233
           WSITGGAITNPGIWSYE
Sbjct: 68  WSITGGAITNPGIWSYE 84


>ref|YP_007353792.1| PSII 47 kDa protein (chloroplast) [Chrysanthemum x morifolium]
           gi|452849077|ref|YP_007474755.1| PSII 47 kDa protein
           (chloroplast) [Chrysanthemum indicum]
           gi|372863232|gb|AEX99304.1| PSII 47 kDa protein
           (chloroplast) [Chrysanthemum indicum]
           gi|372863471|gb|AEX99540.1| PSII 47 kDa protein
           (chloroplast) [Chrysanthemum indicum]
           gi|375298862|gb|AFA45301.1| PSII 47 kDa protein
           (chloroplast) [Chrysanthemum x morifolium]
          Length = 508

 Score =  165 bits (418), Expect = 3e-39
 Identities = 76/77 (98%), Positives = 76/77 (98%)
 Frame = +3

Query: 3   RLLAVHIMHTALVSGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGG 182
           RLLAVHIMHTALVSGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGG
Sbjct: 18  RLLAVHIMHTALVSGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGG 77

Query: 183 WSITGGAITNPGIWSYE 233
           WSITGG ITNPGIWSYE
Sbjct: 78  WSITGGTITNPGIWSYE 94


>gb|ADM63284.1| photosystem II cp47 protein [Patrinia triloba]
          Length = 498

 Score =  165 bits (418), Expect = 3e-39
 Identities = 75/77 (97%), Positives = 77/77 (100%)
 Frame = +3

Query: 3   RLLAVHIMHTALVSGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGG 182
           RLLAVHIMHTALV+GWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGG
Sbjct: 8   RLLAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGG 67

Query: 183 WSITGGAITNPGIWSYE 233
           WSITGGA+TNPGIWSYE
Sbjct: 68  WSITGGAVTNPGIWSYE 84


>ref|YP_002836116.1| photosystem II CP47 chlorophyll apoprotein [Megaleranthis
           saniculifolia] gi|226933908|gb|ACO92041.1| photosystem
           II CP47 chlorophyll apoprotein [Megaleranthis
           saniculifolia]
          Length = 508

 Score =  165 bits (418), Expect = 3e-39
 Identities = 76/77 (98%), Positives = 76/77 (98%)
 Frame = +3

Query: 3   RLLAVHIMHTALVSGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGG 182
           RLLAVHIMHTALVSGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGG
Sbjct: 18  RLLAVHIMHTALVSGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGG 77

Query: 183 WSITGGAITNPGIWSYE 233
           WSITGG ITNPGIWSYE
Sbjct: 78  WSITGGTITNPGIWSYE 94


>ref|YP_001004212.1| photosystem II CP47 chlorophyll apoprotein [Ranunculus macranthus]
           gi|122219795|sp|Q4FFM9.1|PSBB_RANMC RecName:
           Full=Photosystem II CP47 chlorophyll apoprotein;
           AltName: Full=PSII 47 kDa protein; AltName: Full=Protein
           CP-47 gi|69217595|gb|AAZ04084.1| photosystem II 47 kDa
           protein [Ranunculus macranthus]
           gi|85540830|gb|ABC70782.1| photosystem II CP47
           chlorophyll apoprotein [Ranunculus macranthus]
          Length = 508

 Score =  165 bits (418), Expect = 3e-39
 Identities = 76/77 (98%), Positives = 76/77 (98%)
 Frame = +3

Query: 3   RLLAVHIMHTALVSGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGG 182
           RLLAVHIMHTALVSGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGG
Sbjct: 18  RLLAVHIMHTALVSGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGG 77

Query: 183 WSITGGAITNPGIWSYE 233
           WSITGG ITNPGIWSYE
Sbjct: 78  WSITGGTITNPGIWSYE 94