BLASTX nr result
ID: Coptis25_contig00033568
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00033568
(322 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containi... 149 2e-34
emb|CBI40590.3| unnamed protein product [Vitis vinifera] 149 2e-34
ref|XP_002523296.1| pentatricopeptide repeat-containing protein,... 124 1e-26
ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containi... 119 2e-25
ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containi... 119 2e-25
>ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Vitis vinifera]
Length = 512
Score = 149 bits (377), Expect = 2e-34
Identities = 73/104 (70%), Positives = 81/104 (77%)
Frame = -3
Query: 317 QCLKLYSQMCLRGCWPNPHSFTFLFAACASLLSRQQGQMVHTQFFKLGFEYDPYALTALV 138
QC LY+QMCL+GC PN HSFTFLF+ACASL S QQG+M+HT F K GF D +ALTALV
Sbjct: 65 QCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGCDVFALTALV 124
Query: 137 DMYAKCGLAGLARKVFDEMSGDRDLPAWNSMITGYTRCGDLAEA 6
DMYAK GL LARK FDEM+ RD+P WNSMI GY RCGDL A
Sbjct: 125 DMYAKLGLLSLARKQFDEMT-VRDVPTWNSMIAGYARCGDLEGA 167
Score = 57.4 bits (137), Expect = 1e-06
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Frame = -3
Query: 272 PNPHSFTFLFAACASLLSRQQGQMVHTQFFKLGFEYDPYALTALVDMYAKCGLAGLARKV 93
PN + + ACA+L + + G+ + G+ + Y AL++MYA+CG A V
Sbjct: 213 PNEVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWGV 272
Query: 92 FDEMSGDRDLPAWNSMITG---YTRCGDLAE 9
F+E+ G R+L +WNSMI G + RC + E
Sbjct: 273 FEEIDGRRNLCSWNSMIMGLAVHGRCDEAIE 303
>emb|CBI40590.3| unnamed protein product [Vitis vinifera]
Length = 495
Score = 149 bits (377), Expect = 2e-34
Identities = 73/104 (70%), Positives = 81/104 (77%)
Frame = -3
Query: 317 QCLKLYSQMCLRGCWPNPHSFTFLFAACASLLSRQQGQMVHTQFFKLGFEYDPYALTALV 138
QC LY+QMCL+GC PN HSFTFLF+ACASL S QQG+M+HT F K GF D +ALTALV
Sbjct: 65 QCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGCDVFALTALV 124
Query: 137 DMYAKCGLAGLARKVFDEMSGDRDLPAWNSMITGYTRCGDLAEA 6
DMYAK GL LARK FDEM+ RD+P WNSMI GY RCGDL A
Sbjct: 125 DMYAKLGLLSLARKQFDEMT-VRDVPTWNSMIAGYARCGDLEGA 167
Score = 57.4 bits (137), Expect = 1e-06
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Frame = -3
Query: 272 PNPHSFTFLFAACASLLSRQQGQMVHTQFFKLGFEYDPYALTALVDMYAKCGLAGLARKV 93
PN + + ACA+L + + G+ + G+ + Y AL++MYA+CG A V
Sbjct: 213 PNEVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWGV 272
Query: 92 FDEMSGDRDLPAWNSMITG---YTRCGDLAE 9
F+E+ G R+L +WNSMI G + RC + E
Sbjct: 273 FEEIDGRRNLCSWNSMIMGLAVHGRCDEAIE 303
>ref|XP_002523296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223537384|gb|EEF39012.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 353
Score = 124 bits (310), Expect = 1e-26
Identities = 60/104 (57%), Positives = 71/104 (68%)
Frame = -3
Query: 317 QCLKLYSQMCLRGCWPNPHSFTFLFAACASLLSRQQGQMVHTQFFKLGFEYDPYALTALV 138
QC +YSQM R C N H+FTFLFAACAS S QM+HT F K GFE D ALTALV
Sbjct: 65 QCFSIYSQMRSRNCTGNQHTFTFLFAACASFFSPLHAQMLHTHFKKSGFESDVIALTALV 124
Query: 137 DMYAKCGLAGLARKVFDEMSGDRDLPAWNSMITGYTRCGDLAEA 6
DMY K G+ A +VFDE+ RD+P WN++I GY+RCGD+ A
Sbjct: 125 DMYCKLGMVAFAHRVFDEIP-VRDIPTWNALIAGYSRCGDMEGA 167
Score = 60.5 bits (145), Expect = 1e-07
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Frame = -3
Query: 281 GCWPNPHSFTFLFAACASLLSRQQGQMVHTQFFKLGFEYDPYALTALVDMYAKCGLAGLA 102
G PN + + ACA+L + + G + T + G + Y AL++MYA+CG +A
Sbjct: 210 GLRPNEVTIASILPACANLGALEVGDRIETYARENGLLRNLYVSNALLEMYARCGKIDMA 269
Query: 101 RKVFDEMSGD-RDLPAWNSMITG 36
RKVFD++ G R+L +WNSMI G
Sbjct: 270 RKVFDKIIGKRRNLCSWNSMIMG 292
>ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 512
Score = 119 bits (299), Expect = 2e-25
Identities = 58/104 (55%), Positives = 73/104 (70%)
Frame = -3
Query: 317 QCLKLYSQMCLRGCWPNPHSFTFLFAACASLLSRQQGQMVHTQFFKLGFEYDPYALTALV 138
+C LY QMC +GC PN +SFTFLF ACASL + GQM+H+ F K GF D +A+TAL+
Sbjct: 65 RCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFAMTALL 124
Query: 137 DMYAKCGLAGLARKVFDEMSGDRDLPAWNSMITGYTRCGDLAEA 6
DMYAK G+ AR++FDEM RD+P WNS+I GY R G + A
Sbjct: 125 DMYAKLGMLRSARQLFDEMP-VRDIPTWNSLIAGYARSGHMEAA 167
Score = 54.7 bits (130), Expect = 8e-06
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Frame = -3
Query: 284 RGCWPNPHSFTFLFAACASLLSRQQGQMVHTQFFKLGFEYDPYALTALVDMYAKCGLAGL 105
+G PN S + AC+ L + G+ + GF + Y A+++++A+CG
Sbjct: 209 KGTKPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIEE 268
Query: 104 ARKVFDEMSGDRDLPAWNSMITG---YTRCGD 18
A++VFDE+ R+L +WN+MI G + RC D
Sbjct: 269 AQQVFDEIGSKRNLCSWNTMIMGLAVHGRCID 300
>ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 589
Score = 119 bits (299), Expect = 2e-25
Identities = 58/104 (55%), Positives = 73/104 (70%)
Frame = -3
Query: 317 QCLKLYSQMCLRGCWPNPHSFTFLFAACASLLSRQQGQMVHTQFFKLGFEYDPYALTALV 138
+C LY QMC +GC PN +SFTFLF ACASL + GQM+H+ F K GF D +A+TAL+
Sbjct: 65 RCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFAMTALL 124
Query: 137 DMYAKCGLAGLARKVFDEMSGDRDLPAWNSMITGYTRCGDLAEA 6
DMYAK G+ AR++FDEM RD+P WNS+I GY R G + A
Sbjct: 125 DMYAKLGMLRSARQLFDEMP-VRDIPTWNSLIAGYARSGHMEAA 167
Score = 54.7 bits (130), Expect = 8e-06
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Frame = -3
Query: 284 RGCWPNPHSFTFLFAACASLLSRQQGQMVHTQFFKLGFEYDPYALTALVDMYAKCGLAGL 105
+G PN S + AC+ L + G+ + GF + Y A+++++A+CG
Sbjct: 209 KGTKPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIEE 268
Query: 104 ARKVFDEMSGDRDLPAWNSMITG---YTRCGD 18
A++VFDE+ R+L +WN+MI G + RC D
Sbjct: 269 AQQVFDEIGSKRNLCSWNTMIMGLAVHGRCID 300