BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00033537
         (272 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_005090363.1| DNA-dependent RNA polymerase (mitochondrion)...    65   7e-09
ref|YP_005090412.1| orf2 gene product (mitochondrion) [Boea hygr...    64   1e-08
ref|YP_002608352.1| DNA-dependent RNA polymerase [Vitis vinifera...    63   2e-08
emb|CAQ52970.1| unnamed protein product [Lolium perenne]               62   4e-08
emb|CAQ52967.1| unnamed protein product [Lolium perenne]               62   4e-08

>ref|YP_005090363.1| DNA-dependent RNA polymerase (mitochondrion) [Phoenix dactylifera]
            gi|343478415|gb|AEM43903.1| DNA-dependent RNA polymerase
            (mitochondrion) [Phoenix dactylifera]
          Length = 875

 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 44/122 (36%), Positives = 58/122 (47%), Gaps = 32/122 (26%)
 Frame = -3

Query: 270  AINVVDSL---NECPVYTVHDNFITTTVHARKIPNLYLEQFIQLGDPLKIINSFILENLI 100
            A+ VV+ L      PVYTVHDNFITT ++AR +P +Y   F+ +G PL+ IN FI  NLI
Sbjct: 689  AMKVVEELLLIQGAPVYTVHDNFITTALYARMVPEIYTGVFVNMGAPLRFINQFINRNLI 748

Query: 99   F------------DKKKWSINQ-----------------ESPIPSDDLRNILKSQDQKVL 7
                          ++K S  +                 E PIP +D+R  L     K L
Sbjct: 749  LPDFPFYMDLSDSPEEKASARKIEERLPKNPSNYVFHWVEDPIPGEDIRYFLDYLMPKDL 808

Query: 6    SK 1
            SK
Sbjct: 809  SK 810


>ref|YP_005090412.1| orf2 gene product (mitochondrion) [Boea hygrometrica]
           gi|340549502|gb|AEK53323.1| hypothetical protein
           (mitochondrion) [Boea hygrometrica]
          Length = 585

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 31/61 (50%), Positives = 43/61 (70%), Gaps = 4/61 (6%)
 Frame = -3

Query: 270 AINVVDSL----NECPVYTVHDNFITTTVHARKIPNLYLEQFIQLGDPLKIINSFILENL 103
           A+NVV+SL    N+CP+YTVHDNFITT  + +++   Y      +G+PL IINSFI +N+
Sbjct: 435 AMNVVESLMKNYNDCPIYTVHDNFITTAKYNKRLSEFYSYAIKSMGNPLVIINSFIWKNV 494

Query: 102 I 100
           I
Sbjct: 495 I 495


>ref|YP_002608352.1| DNA-dependent RNA polymerase [Vitis vinifera]
            gi|209954148|emb|CAQ77581.1| DNA-dependent RNA
            polymerase. This is a family of single chain RNA
            polymerases; pfam00940 [Vitis vinifera]
            gi|239764752|gb|ACS15222.1| DNA-dependent RNA polymerase
            [Vitis vinifera]
          Length = 975

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 37/79 (46%), Positives = 47/79 (59%)
 Frame = -3

Query: 237  PVYTVHDNFITTTVHARKIPNLYLEQFIQLGDPLKIINSFILENLIFDKKKWSINQESPI 58
            PVYTVHDNFITT  +A  I   Y+     +G PL  IN FI  NL  D+  +++  ESPI
Sbjct: 840  PVYTVHDNFITTAPYASYISRYYVLVLYNMGSPLLWINQFIDLNLAIDRNSYTL--ESPI 897

Query: 57   PSDDLRNILKSQDQKVLSK 1
            P+  L N L+S   K L+K
Sbjct: 898  PNHILLNSLESIIPKNLNK 916


>emb|CAQ52970.1| unnamed protein product [Lolium perenne]
          Length = 1272

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 28/46 (60%), Positives = 31/46 (67%)
 Frame = -3

Query: 237  PVYTVHDNFITTTVHARKIPNLYLEQFIQLGDPLKIINSFILENLI 100
            P+YTVHDNFITT  HA KIP  Y   F   G PL IIN FI +N+I
Sbjct: 1056 PIYTVHDNFITTIEHASKIPQFYRNAFYSFGHPLLIINKFIYDNII 1101


>emb|CAQ52967.1| unnamed protein product [Lolium perenne]
          Length = 1272

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 28/46 (60%), Positives = 31/46 (67%)
 Frame = -3

Query: 237  PVYTVHDNFITTTVHARKIPNLYLEQFIQLGDPLKIINSFILENLI 100
            P+YTVHDNFITT  HA KIP  Y   F   G PL IIN FI +N+I
Sbjct: 1056 PIYTVHDNFITTIEHASKIPQFYRNAFYSFGHPLLIINKFIYDNII 1101