BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00033521
         (322 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002301860.1| predicted protein [Populus trichocarpa] gi|2...   167   8e-40
ref|XP_002532374.1| basic helix-loop-helix-containing protein, p...   160   8e-38
ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containi...   157   9e-37
ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containi...   157   9e-37
ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containi...   155   2e-36

>ref|XP_002301860.1| predicted protein [Populus trichocarpa] gi|222843586|gb|EEE81133.1|
           predicted protein [Populus trichocarpa]
          Length = 933

 Score =  167 bits (423), Expect = 8e-40
 Identities = 76/106 (71%), Positives = 93/106 (87%)
 Frame = +1

Query: 4   GYAKLGNVDAATALFSEMHVKDLITWTTMINCYAQNKLFREAIGVFEEMKAIGVSPDEVT 183
           GYA+L  VD A  LF++M  +D+I+WTTMINCY+QNK FREA+GVF EM   G+SPDEVT
Sbjct: 186 GYARLREVDVAELLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVT 245

Query: 184 MSTVISACAHLGALELGREVHYYVLCNGFDLDVYIGSALIDMYAKC 321
           M+TVISACAHLGAL+LG+E+HYY++ +GF+LDVYIGSALIDMYAKC
Sbjct: 246 MATVISACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKC 291



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 27/78 (34%), Positives = 48/78 (61%)
 Frame = +1

Query: 7   YAKLGNVDAATALFSEMHVKDLITWTTMINCYAQNKLFREAIGVFEEMKAIGVSPDEVTM 186
           YAK G++D +  +F ++  K+L  W ++I   A +    EA+ +F++M+   + P+ VT 
Sbjct: 288 YAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPNGVTF 347

Query: 187 STVISACAHLGALELGRE 240
            +V+SAC H G +E GR+
Sbjct: 348 VSVLSACNHAGLIEEGRK 365



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 27/97 (27%), Positives = 52/97 (53%)
 Frame = +1

Query: 25  VDAATALFSEMHVKDLITWTTMINCYAQNKLFREAIGVFEEMKAIGVSPDEVTMSTVISA 204
           +D A   +++M + ++  +  MI  + Q+    +A+ ++ +M    VSP   T  ++I A
Sbjct: 30  MDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQMLRANVSPTSYTFPSLIKA 89

Query: 205 CAHLGALELGREVHYYVLCNGFDLDVYIGSALIDMYA 315
           C  +  L     VH +V  NGFD  V++ ++L+D Y+
Sbjct: 90  CGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYS 126


>ref|XP_002532374.1| basic helix-loop-helix-containing protein, putative [Ricinus
           communis] gi|223527930|gb|EEF30017.1| basic
           helix-loop-helix-containing protein, putative [Ricinus
           communis]
          Length = 310

 Score =  160 bits (406), Expect = 8e-38
 Identities = 73/106 (68%), Positives = 92/106 (86%)
 Frame = +1

Query: 4   GYAKLGNVDAATALFSEMHVKDLITWTTMINCYAQNKLFREAIGVFEEMKAIGVSPDEVT 183
           GY+KL ++++A  LFS+MH +D+I+WTTM+NCYAQNK F EA+ VF +M   G+ PDEVT
Sbjct: 116 GYSKLRDLESAEFLFSQMHERDIISWTTMVNCYAQNKKFGEALVVFNQMIKTGICPDEVT 175

Query: 184 MSTVISACAHLGALELGREVHYYVLCNGFDLDVYIGSALIDMYAKC 321
           M+TVISACAHLGAL+LG+E+H YV+ NGFDLDVYIGS+LIDMYAKC
Sbjct: 176 MATVISACAHLGALDLGKEIHLYVMQNGFDLDVYIGSSLIDMYAKC 221



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 26/76 (34%), Positives = 46/76 (60%)
 Frame = +1

Query: 7   YAKLGNVDAATALFSEMHVKDLITWTTMINCYAQNKLFREAIGVFEEMKAIGVSPDEVTM 186
           YAK G++D +  +F ++  K+L  W ++I   A +   +EA+ +F +M    + P+ VT 
Sbjct: 218 YAKCGSLDRSLLVFFKLQEKNLFCWNSVIEGLAAHGYAKEALEMFRKMGREKIKPNGVTF 277

Query: 187 STVISACAHLGALELG 234
            +V++ACAH G +E G
Sbjct: 278 ISVLNACAHAGLVEEG 293


>ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 697

 Score =  157 bits (397), Expect = 9e-37
 Identities = 68/106 (64%), Positives = 91/106 (85%)
 Frame = +1

Query: 4   GYAKLGNVDAATALFSEMHVKDLITWTTMINCYAQNKLFREAIGVFEEMKAIGVSPDEVT 183
           GYA+LGNV++A  LF++M  KD+I+WTTMI CY+QNK +++A+ ++ EM+  G+ PDEVT
Sbjct: 341 GYARLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVT 400

Query: 184 MSTVISACAHLGALELGREVHYYVLCNGFDLDVYIGSALIDMYAKC 321
           MSTV SACAH+GALELG+E+H+YV+  G +LDVYIGSAL+DMYAKC
Sbjct: 401 MSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKC 446


>ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Vitis vinifera]
          Length = 464

 Score =  157 bits (397), Expect = 9e-37
 Identities = 72/106 (67%), Positives = 90/106 (84%)
 Frame = +1

Query: 4   GYAKLGNVDAATALFSEMHVKDLITWTTMINCYAQNKLFREAIGVFEEMKAIGVSPDEVT 183
           GY++L NV++A  LFS+M  +D+I+WTTMI CY+QNK FREA+ VF EM+  G+ PDEVT
Sbjct: 116 GYSRLRNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVT 175

Query: 184 MSTVISACAHLGALELGREVHYYVLCNGFDLDVYIGSALIDMYAKC 321
           M+T+ISACAHLGAL+LG+E+H Y +  GFDLDVYIGSALIDMYAKC
Sbjct: 176 MATIISACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKC 221



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 26/78 (33%), Positives = 45/78 (57%)
 Frame = +1

Query: 7   YAKLGNVDAATALFSEMHVKDLITWTTMINCYAQNKLFREAIGVFEEMKAIGVSPDEVTM 186
           YAK G++D +  +F ++  K+L  W ++I   A +    EA+ +F  M+   + P+ VT 
Sbjct: 218 YAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTF 277

Query: 187 STVISACAHLGALELGRE 240
            +V+ AC H G +E GR+
Sbjct: 278 ISVLGACTHAGLVEEGRK 295


>ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 600

 Score =  155 bits (393), Expect = 2e-36
 Identities = 67/106 (63%), Positives = 90/106 (84%)
 Frame = +1

Query: 4   GYAKLGNVDAATALFSEMHVKDLITWTTMINCYAQNKLFREAIGVFEEMKAIGVSPDEVT 183
           GY +LGNV++A  LF++M  KD+I+WTTMI CY+QNK +++A+ ++ EM+  G+ PDEVT
Sbjct: 244 GYTRLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVT 303

Query: 184 MSTVISACAHLGALELGREVHYYVLCNGFDLDVYIGSALIDMYAKC 321
           MSTV SACAH+GALELG+E+H+YV+  G +LDVYIGSAL+DMYAKC
Sbjct: 304 MSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKC 349