BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00033510
         (428 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI31981.3| unnamed protein product [Vitis vinifera]              151   5e-35
ref|XP_002271313.1| PREDICTED: pentatricopeptide repeat-containi...   151   5e-35
ref|XP_002522400.1| pentatricopeptide repeat-containing protein,...   147   9e-34
ref|XP_003593920.1| Pentatricopeptide repeat-containing protein ...   141   5e-32
gb|EEE68919.1| hypothetical protein OsJ_27783 [Oryza sativa Japo...   138   4e-31

>emb|CBI31981.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  151 bits (382), Expect = 5e-35
 Identities = 74/142 (52%), Positives = 100/142 (70%)
 Frame = -2

Query: 427 AIVMMYSKNGCMGTARKIFDGVLKKDIVLWNCIIEGYAGNGXXXXXXXXXXXXXXEKVKP 248
           A++ MY+  G +    KIF  V KKD+VLWNC+I+GYA +               E+VKP
Sbjct: 230 ALIDMYANAGFIDLGHKIFYQVPKKDVVLWNCLIDGYAKSDLLQESLSLLQLMKREQVKP 289

Query: 247 NSATLAGVLSTCASSGALAVGVRIHEYIEKASLGLDEVLGTALLDMYSKCGYVEKAADIF 68
           NS+TL G+LS CA++GA +VG+ I  Y+E+  + LD VLGTAL+DMY KCG++EKA D+F
Sbjct: 290 NSSTLVGLLSACAAAGASSVGLCISNYVEEEQIALDAVLGTALVDMYCKCGFLEKAIDVF 349

Query: 67  ESMQRKDVRSWTAMITGCGVNG 2
           E M+ KDV+SWTAMI+G GV+G
Sbjct: 350 ERMEIKDVKSWTAMISGYGVHG 371


>ref|XP_002271313.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900,
           mitochondrial-like [Vitis vinifera]
          Length = 597

 Score =  151 bits (382), Expect = 5e-35
 Identities = 74/142 (52%), Positives = 100/142 (70%)
 Frame = -2

Query: 427 AIVMMYSKNGCMGTARKIFDGVLKKDIVLWNCIIEGYAGNGXXXXXXXXXXXXXXEKVKP 248
           A++ MY+  G +    KIF  V KKD+VLWNC+I+GYA +               E+VKP
Sbjct: 269 ALIDMYANAGFIDLGHKIFYQVPKKDVVLWNCLIDGYAKSDLLQESLSLLQLMKREQVKP 328

Query: 247 NSATLAGVLSTCASSGALAVGVRIHEYIEKASLGLDEVLGTALLDMYSKCGYVEKAADIF 68
           NS+TL G+LS CA++GA +VG+ I  Y+E+  + LD VLGTAL+DMY KCG++EKA D+F
Sbjct: 329 NSSTLVGLLSACAAAGASSVGLCISNYVEEEQIALDAVLGTALVDMYCKCGFLEKAIDVF 388

Query: 67  ESMQRKDVRSWTAMITGCGVNG 2
           E M+ KDV+SWTAMI+G GV+G
Sbjct: 389 ERMEIKDVKSWTAMISGYGVHG 410



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 1/138 (0%)
 Frame = -2

Query: 427 AIVMMYSKNGCMGTARKIFDGVLKK-DIVLWNCIIEGYAGNGXXXXXXXXXXXXXXEKVK 251
           A++  Y   G +G A ++FD +  K D+V WN ++ GY                  + +K
Sbjct: 167 ALLHFYCVCGRIGDAHQLFDEIPPKIDLVSWNTLLGGYLQVPHPTMVTCLFGEMCRKGLK 226

Query: 250 PNSATLAGVLSTCASSGALAVGVRIHEYIEKASLGLDEVLGTALLDMYSKCGYVEKAADI 71
            ++ T++ VL      G +  GV +H +  K     D  + TAL+DMY+  G+++    I
Sbjct: 227 FSTTTISSVLCAVGDLGNILGGVSLHGHCIKVGFCSDLNVATALIDMYANAGFIDLGHKI 286

Query: 70  FESMQRKDVRSWTAMITG 17
           F  + +KDV  W  +I G
Sbjct: 287 FYQVPKKDVVLWNCLIDG 304


>ref|XP_002522400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223538285|gb|EEF39892.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 476

 Score =  147 bits (371), Expect = 9e-34
 Identities = 67/142 (47%), Positives = 102/142 (71%)
 Frame = -2

Query: 427 AIVMMYSKNGCMGTARKIFDGVLKKDIVLWNCIIEGYAGNGXXXXXXXXXXXXXXEKVKP 248
           A++ MY+K G + + R+IFDG+++KD++LWNC+I+ YA  G              E V+ 
Sbjct: 269 ALIEMYAKTGRIDSGRRIFDGIVEKDVILWNCMIDKYAKVGLLEQAIALLQLMKLEGVRA 328

Query: 247 NSATLAGVLSTCASSGALAVGVRIHEYIEKASLGLDEVLGTALLDMYSKCGYVEKAADIF 68
           NS++LAG+L+ CA+SG++ +G R+ +Y+E   L +D VLGTAL+DM+ KCG+++KA  +F
Sbjct: 329 NSSSLAGLLAACAASGSIKLGWRLSDYVEAEELEVDAVLGTALVDMFGKCGFLDKAIQVF 388

Query: 67  ESMQRKDVRSWTAMITGCGVNG 2
           E M+ KDV+SWTAMI G GV+G
Sbjct: 389 ERMESKDVKSWTAMILGYGVHG 410



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 1/135 (0%)
 Frame = -2

Query: 424 IVMMYSKNGCMGTARKIFDGVLK-KDIVLWNCIIEGYAGNGXXXXXXXXXXXXXXEKVKP 248
           ++ +YS  G +G A+K+FD   +  D+V WN ++  Y                       
Sbjct: 168 LLHLYSVCGLIGDAQKLFDEFSQLNDLVSWNALMGAYLHVSQPAMTIEVYGQMFRYGFIM 227

Query: 247 NSATLAGVLSTCASSGALAVGVRIHEYIEKASLGLDEVLGTALLDMYSKCGYVEKAADIF 68
           + AT   VLS  A  G    G  IH    K     +  + TAL++MY+K G ++    IF
Sbjct: 228 SVATSLSVLSAFADLGDPTGGETIHACCIKIGFCSNLNVVTALIEMYAKTGRIDSGRRIF 287

Query: 67  ESMQRKDVRSWTAMI 23
           + +  KDV  W  MI
Sbjct: 288 DGIVEKDVILWNCMI 302


>ref|XP_003593920.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355482968|gb|AES64171.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 801

 Score =  141 bits (356), Expect = 5e-32
 Identities = 70/143 (48%), Positives = 104/143 (72%), Gaps = 1/143 (0%)
 Frame = -2

Query: 427 AIVMMYSKNGCMGTARKIFDGVLKKDIVLWNCIIEGYAGNGXXXXXXXXXXXXXXEKVKP 248
           A++ MY+K GC+  ARK+FDGV++KD+VLWNC+I+ YA +               E VKP
Sbjct: 251 ALIDMYAKTGCIYLARKVFDGVVEKDVVLWNCLIKNYARSCLVEEAVALLQSMRQEGVKP 310

Query: 247 NSATLAGVLSTCASSGALAVGVR-IHEYIEKASLGLDEVLGTALLDMYSKCGYVEKAADI 71
           NS+TL G+LS  ++SG++  GVR +   IE+  L LD +LGTAL+D+Y+KCG++++A +I
Sbjct: 311 NSSTLVGLLSVYSASGSMQ-GVRYVTSLIEEEKLELDVILGTALVDVYAKCGFLDEAMEI 369

Query: 70  FESMQRKDVRSWTAMITGCGVNG 2
           FE M+ KDV+SWTA+I+G G++G
Sbjct: 370 FERMENKDVKSWTAVISGHGIHG 392



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
 Frame = -2

Query: 424 IVMMYSKNGCMGTARKIFDGVLKK-DIVLWNCIIEGYAGNGXXXXXXXXXXXXXXEKVKP 248
           I+  Y   G +  ARK+FD   ++ D+V WN ++ G                     ++ 
Sbjct: 150 ILQFYCVCGRIDDARKVFDECPERNDLVSWNILMGGCVLVSDYSFVFDLFLKRGCSGIRA 209

Query: 247 NSATLAGVLSTCASSGALAVGVRIHEYIEKASLGLDEVLGTALLDMYSKCGYVEKAADIF 68
           + AT   +LS     G+  +G  +H Y  K     +  + TAL+DMY+K G +  A  +F
Sbjct: 210 SVATTLSLLSAAGDIGSFVLGKSLHGYCIKIGFCCNLNVVTALIDMYAKTGCIYLARKVF 269

Query: 67  ESMQRKDVRSWTAMI 23
           + +  KDV  W  +I
Sbjct: 270 DGVVEKDVVLWNCLI 284


>gb|EEE68919.1| hypothetical protein OsJ_27783 [Oryza sativa Japonica Group]
          Length = 604

 Score =  138 bits (348), Expect = 4e-31
 Identities = 68/142 (47%), Positives = 92/142 (64%)
 Frame = -2

Query: 427 AIVMMYSKNGCMGTARKIFDGVLKKDIVLWNCIIEGYAGNGXXXXXXXXXXXXXXEKVKP 248
           A+V MY +   +   RK+FD   K+D+VL+NC+++GYA  G              E V+P
Sbjct: 252 AMVGMYVREKSVECGRKVFDEATKRDLVLYNCMVDGYAEAGQVEEAMGLVDRMRLEGVRP 311

Query: 247 NSATLAGVLSTCASSGALAVGVRIHEYIEKASLGLDEVLGTALLDMYSKCGYVEKAADIF 68
           +S TL GVLS C +SGA+A G R+HE   +A L LD  LGTAL+DMY KCGY  +A  +F
Sbjct: 312 SSGTLVGVLSACGASGAMAAGRRLHEIALEAGLELDTALGTALMDMYFKCGYPSEAVAVF 371

Query: 67  ESMQRKDVRSWTAMITGCGVNG 2
           ++MQ +DV++WT MI G GVNG
Sbjct: 372 DAMQERDVKAWTVMIMGFGVNG 393